RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 LCE3BQ5TA77 95 aa3.21□□□□□ -1.9
PDGFC-201ENST00000274071 KRTAP19-5Q3LI72 72 aa3.2□□□□□ -1.9
PDGFC-201ENST00000274071 HMCN1Q96RW7 5635 aa3.16□□□□□ -1.9
PDGFC-201ENST00000274071 KRTAP12-4P60329 112 aa3.15□□□□□ -1.91
PDGFC-201ENST00000274071 KMT2DO14686 5537 aa3.14□□□□□ -1.91
PDGFC-201ENST00000274071 KRTAP9-9Q9BYP9 154 aa3.12□□□□□ -1.91
PDGFC-201ENST00000274071 KRTAP9-4Q9BYQ2 154 aa3.12□□□□□ -1.91
PDGFC-201ENST00000274071 SSPOA2VEC9 5147 aa3.11□□□□□ -1.91
PDGFC-201ENST00000274071 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
PDGFC-201ENST00000274071 KRTAP4-9Q9BYQ8 210 aa3.07□□□□□ -1.92
PDGFC-201ENST00000274071 LCE1DQ5T752 114 aa3.06□□□□□ -1.92
PDGFC-201ENST00000274071 KRTAP2-2Q9BYT5 123 aa3□□□□□ -1.93
PDGFC-201ENST00000274071 KRTAP4-12Q9BQ66 201 aa2.99□□□□□ -1.93
PDGFC-201ENST00000274071 KRTAP6-3Q3LI67 103 aa2.98□□□□□ -1.93
PDGFC-201ENST00000274071 KRTAP19-6Q3LI70 58 aa2.96□□□□□ -1.94
PDGFC-201ENST00000274071 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
PDGFC-201ENST00000274071 LCE1AQ5T7P2 110 aa2.94□□□□□ -1.94
PDGFC-201ENST00000274071 KRTAP19-7Q3SYF9 63 aa2.91□□□□□ -1.94
PDGFC-201ENST00000274071 KRTAP19-4Q3LI73 84 aa2.87□□□□□ -1.95
PDGFC-201ENST00000274071 MT1LQ93083 61 aa2.85□□□□□ -1.95
PDGFC-201ENST00000274071 PRM1P04553 51 aa2.85□□□□□ -1.95
PDGFC-201ENST00000274071 MACF1Q9UPN3 7388 aaKnown RBP2.85□□□□□ -1.95
PDGFC-201ENST00000274071 KRTAP9-7A8MTY7 169 aa2.84□□□□□ -1.96
PDGFC-201ENST00000274071 MT1EP04732 61 aa2.84□□□□□ -1.96
PDGFC-201ENST00000274071 MUC12Q9UKN1 5478 aa2.84□□□□□ -1.96
PDGFC-201ENST00000274071 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
PDGFC-201ENST00000274071 LCE4AQ5TA78 99 aa2.81□□□□□ -1.96
PDGFC-201ENST00000274071 SYNE2Q8WXH0 6885 aaKnown RBP2.81□□□□□ -1.96
PDGFC-201ENST00000274071 CRCT1Q9UGL9 99 aa2.8□□□□□ -1.96
PDGFC-201ENST00000274071 KRTAP4-11Q9BYQ6 195 aa2.79□□□□□ -1.96
PDGFC-201ENST00000274071 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
PDGFC-201ENST00000274071 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
PDGFC-201ENST00000274071 MT1GP13640 62 aa2.76□□□□□ -1.97
PDGFC-201ENST00000274071 KRTAP4-3Q9BYR4 195 aa2.73□□□□□ -1.97
PDGFC-201ENST00000274071 MDN1Q9NU22 5596 aa2.73□□□□□ -1.97
PDGFC-201ENST00000274071 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
PDGFC-201ENST00000274071 KRTAP19-3Q7Z4W3 81 aa2.69□□□□□ -1.98
PDGFC-201ENST00000274071 SPRR2FQ96RM1 72 aa2.69□□□□□ -1.98
PDGFC-201ENST00000274071 LCE3EQ5T5B0 92 aa2.68□□□□□ -1.98
PDGFC-201ENST00000274071 LCE3DQ9BYE3 92 aa2.67□□□□□ -1.98
PDGFC-201ENST00000274071 MT1AP04731 61 aa2.67□□□□□ -1.98
PDGFC-201ENST00000274071 MT1MQ8N339 61 aa2.67□□□□□ -1.98
PDGFC-201ENST00000274071 OBSCNQ5VST9 7968 aa2.63□□□□□ -1.99
PDGFC-201ENST00000274071 LCE5AQ5TCM9 118 aa2.63□□□□□ -1.99
PDGFC-201ENST00000274071 KRTAP6-2Q3LI66 62 aa2.58□□□□□ -2
PDGFC-201ENST00000274071 KRTAP5-9P26371 169 aa2.56□□□□□ -2
PDGFC-201ENST00000274071 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
PDGFC-201ENST00000274071 SPRR2EP22531 72 aa2.52□□□□□ -2.01
PDGFC-201ENST00000274071 SPRR2BP35325 72 aa2.52□□□□□ -2.01
PDGFC-201ENST00000274071 SPRR2AP35326 72 aa2.52□□□□□ -2.01
PDGFC-201ENST00000274071 KRTAP6-1Q3LI64 71 aa2.46□□□□□ -2.02
PDGFC-201ENST00000274071 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
PDGFC-201ENST00000274071 SPRR2DP22532 72 aa2.41□□□□□ -2.02
PDGFC-201ENST00000274071 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
PDGFC-201ENST00000274071 NEBP20929 6669 aa2.36□□□□□ -2.03
PDGFC-201ENST00000274071 KRTAP20-1Q3LI63 56 aa2.32□□□□□ -2.04
PDGFC-201ENST00000274071 MT4P47944 62 aa2.18□□□□□ -2.06
PDGFC-201ENST00000274071 KRTAP5-4Q6L8H1 288 aa2.17□□□□□ -2.06
PDGFC-201ENST00000274071 MT3P25713 68 aa2.15□□□□□ -2.07
PDGFC-201ENST00000274071 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
PDGFC-201ENST00000274071 GPR98Q8WXG9 6306 aa2.05□□□□□ -2.08
PDGFC-201ENST00000274071 KRTAP20-2Q3LI61 65 aa2.04□□□□□ -2.08
PDGFC-201ENST00000274071 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
PDGFC-201ENST00000274071 MUC5ACP98088 5654 aa1.93□□□□□ -2.1
PDGFC-201ENST00000274071 KRTAP5-10Q6L8G5 202 aa1.89□□□□□ -2.11
PDGFC-201ENST00000274071 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
PDGFC-201ENST00000274071 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
PDGFC-201ENST00000274071 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.11
PDGFC-201ENST00000274071 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.12
PDGFC-201ENST00000274071 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.12
PDGFC-201ENST00000274071 KRTAP5-1Q6L8H4 278 aa1.82□□□□□ -2.12
PDGFC-201ENST00000274071 AHNAK2Q8IVF2 5795 aa1.81□□□□□ -2.12
PDGFC-201ENST00000274071 KRTAP5-11Q6L8G4 156 aa1.77□□□□□ -2.13
PDGFC-201ENST00000274071 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
PDGFC-201ENST00000274071 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
PDGFC-201ENST00000274071 KRTAP21-2Q3LI59 83 aa1.56□□□□□ -2.16
PDGFC-201ENST00000274071 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
PDGFC-201ENST00000274071 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 319.3 ms