RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 LPAP08519 4548 aa3.26□□□□□ -1.89
PTPN4-201ENST00000263708 MYCBP2O75592 4640 aa3.18□□□□□ -1.9
PTPN4-201ENST00000263708 KRTAP2-3P0C7H8 128 aa3.18□□□□□ -1.9
PTPN4-201ENST00000263708 KRTAP2-4Q9BYR9 128 aa3.18□□□□□ -1.9
PTPN4-201ENST00000263708 KRTAP2-1Q9BYU5 128 aa3.18□□□□□ -1.9
PTPN4-201ENST00000263708 KRTAP9-6A0A140TA67 174 aa3.16□□□□□ -1.9
PTPN4-201ENST00000263708 RYR2Q92736 4967 aa3.16□□□□□ -1.9
PTPN4-201ENST00000263708 MT1AP04731 61 aa3.15□□□□□ -1.91
PTPN4-201ENST00000263708 KRTAP19-2Q3LHN2 52 aa3.14□□□□□ -1.91
PTPN4-201ENST00000263708 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
PTPN4-201ENST00000263708 KRTAP6-2Q3LI66 62 aa3.11□□□□□ -1.91
PTPN4-201ENST00000263708 SYNE2Q8WXH0 6885 aaKnown RBP3.1□□□□□ -1.91
PTPN4-201ENST00000263708 KIAA1109Q2LD37 5005 aa3.07□□□□□ -1.92
PTPN4-201ENST00000263708 HERC2O95714 4834 aa3.07□□□□□ -1.92
PTPN4-201ENST00000263708 HYDINQ4G0P3 5121 aa3.07□□□□□ -1.92
PTPN4-201ENST00000263708 MUC17Q685J3 4493 aa3.04□□□□□ -1.92
PTPN4-201ENST00000263708 LRP2P98164 4655 aa3.03□□□□□ -1.92
PTPN4-201ENST00000263708 KRTAP9-7A8MTY7 169 aa3.03□□□□□ -1.93
PTPN4-201ENST00000263708 KMT2CQ8NEZ4 4911 aaKnown RBP2.99□□□□□ -1.93
PTPN4-201ENST00000263708 KRTAP6-1Q3LI64 71 aa2.98□□□□□ -1.93
PTPN4-201ENST00000263708 LCE2AQ5TA79 106 aaPredicted RBP2.97□□□□□ -1.93
PTPN4-201ENST00000263708 KRTAP9-4Q9BYQ2 154 aa2.95□□□□□ -1.94
PTPN4-201ENST00000263708 ABCA13Q86UQ4 5058 aa2.94□□□□□ -1.94
PTPN4-201ENST00000263708 KRTAP19-7Q3SYF9 63 aa2.93□□□□□ -1.94
PTPN4-201ENST00000263708 EPPK1P58107 5090 aaKnown RBP2.9□□□□□ -1.95
PTPN4-201ENST00000263708 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
PTPN4-201ENST00000263708 HERC1Q15751 4861 aa2.89□□□□□ -1.95
PTPN4-201ENST00000263708 BIRC6Q9NR09 4857 aa2.89□□□□□ -1.95
PTPN4-201ENST00000263708 KRTAP2-2Q9BYT5 123 aa2.85□□□□□ -1.95
PTPN4-201ENST00000263708 KRTAP6-3Q3LI67 103 aa2.84□□□□□ -1.95
PTPN4-201ENST00000263708 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.78□□□□□ -1.96
PTPN4-201ENST00000263708 RNF213Q63HN8 5207 aa2.76□□□□□ -1.97
PTPN4-201ENST00000263708 KRTAP20-2Q3LI61 65 aa2.75□□□□□ -1.97
PTPN4-201ENST00000263708 KRTAP9-6A8MVA2 160 aa2.73□□□□□ -1.97
PTPN4-201ENST00000263708 UBR4Q5T4S7 5183 aa2.72□□□□□ -1.97
PTPN4-201ENST00000263708 KRTAP4-11Q9BYQ6 195 aa2.69□□□□□ -1.98
PTPN4-201ENST00000263708 HMCN2Q8NDA2 5059 aa2.69□□□□□ -1.98
PTPN4-201ENST00000263708 KRTAP4-4Q9BYR3 166 aa2.6□□□□□ -1.99
PTPN4-201ENST00000263708 FAT4Q6V0I7 4981 aa2.58□□□□□ -2
PTPN4-201ENST00000263708 FSIP2Q5CZC0 6907 aa2.57□□□□□ -2
PTPN4-201ENST00000263708 KRTAP4-6Q9BYQ5 205 aa2.56□□□□□ -2
PTPN4-201ENST00000263708 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
PTPN4-201ENST00000263708 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
PTPN4-201ENST00000263708 MUC2Q02817 5179 aa2.52□□□□□ -2.01
PTPN4-201ENST00000263708 SYNE1Q8NF91 8797 aaKnown RBP2.42□□□□□ -2.02
PTPN4-201ENST00000263708 USH2AO75445 5202 aa2.33□□□□□ -2.04
PTPN4-201ENST00000263708 OBSCNQ5VST9 7968 aa2.25□□□□□ -2.05
PTPN4-201ENST00000263708 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
PTPN4-201ENST00000263708 KMT2DO14686 5537 aa2.19□□□□□ -2.06
PTPN4-201ENST00000263708 KRTAP5-9P26371 169 aa2.16□□□□□ -2.06
PTPN4-201ENST00000263708 KRTAP5-4Q6L8H1 288 aa2.12□□□□□ -2.07
PTPN4-201ENST00000263708 NEBP20929 6669 aa2.12□□□□□ -2.07
PTPN4-201ENST00000263708 KRTAP5-5Q701N2 237 aaPredicted RBP2.05□□□□□ -2.08
PTPN4-201ENST00000263708 FCGBPQ9Y6R7 5405 aaPredicted RBP2.03□□□□□ -2.08
PTPN4-201ENST00000263708 MACF1Q9UPN3 7388 aaKnown RBP2.01□□□□□ -2.09
PTPN4-201ENST00000263708 DSTQ03001 7570 aaKnown RBP1.99□□□□□ -2.09
PTPN4-201ENST00000263708 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
PTPN4-201ENST00000263708 MDN1Q9NU22 5596 aa1.88□□□□□ -2.11
PTPN4-201ENST00000263708 MUC12Q9UKN1 5478 aa1.87□□□□□ -2.11
PTPN4-201ENST00000263708 KRTAP5-3Q6L8H2 238 aa1.81□□□□□ -2.12
PTPN4-201ENST00000263708 MUC19Q7Z5P9 8384 aa1.8□□□□□ -2.12
PTPN4-201ENST00000263708 KRTAP5-8O75690 187 aa1.69□□□□□ -2.14
PTPN4-201ENST00000263708 MUC5ACP98088 5654 aa1.66□□□□□ -2.14
PTPN4-201ENST00000263708 KRTAP5-2Q701N4 177 aa1.6□□□□□ -2.15
PTPN4-201ENST00000263708 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
PTPN4-201ENST00000263708 KRTAP5-10Q6L8G5 202 aa1.57□□□□□ -2.16
PTPN4-201ENST00000263708 HMCN1Q96RW7 5635 aa1.54□□□□□ -2.16
PTPN4-201ENST00000263708 MUC5BQ9HC84 5762 aaPredicted RBP1.54□□□□□ -2.16
PTPN4-201ENST00000263708 KRTAP5-1Q6L8H4 278 aa1.47□□□□□ -2.17
PTPN4-201ENST00000263708 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
PTPN4-201ENST00000263708 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
PTPN4-201ENST00000263708 KRTAP5-11Q6L8G4 156 aa1.37□□□□□ -2.19
PTPN4-201ENST00000263708 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.19
PTPN4-201ENST00000263708 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
PTPN4-201ENST00000263708 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.18□□□□□ -2.22
PTPN4-201ENST00000263708 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
PTPN4-201ENST00000263708 KRTAP5-7Q6L8G8 165 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 5.8 ms