RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 KRTAP2-1Q9BYU5 128 aa5□□□□□ -1.61
NOTCH3-201ENST00000263388 KRTAP9-2Q9BYQ4 174 aa4.98□□□□□ -1.61
NOTCH3-201ENST00000263388 MT1AP04731 61 aa4.97□□□□□ -1.61
NOTCH3-201ENST00000263388 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
NOTCH3-201ENST00000263388 RYR2Q92736 4967 aa4.9□□□□□ -1.63
NOTCH3-201ENST00000263388 SYNE2Q8WXH0 6885 aaKnown RBP4.87□□□□□ -1.63
NOTCH3-201ENST00000263388 LCE5AQ5TCM9 118 aa4.84□□□□□ -1.63
NOTCH3-201ENST00000263388 KRTAP4-9Q9BYQ8 210 aa4.82□□□□□ -1.64
NOTCH3-201ENST00000263388 PCLOQ9Y6V0 5065 aa4.8□□□□□ -1.64
NOTCH3-201ENST00000263388 LCE1AQ5T7P2 110 aa4.71□□□□□ -1.66
NOTCH3-201ENST00000263388 LCE2AQ5TA79 106 aaPredicted RBP4.71□□□□□ -1.66
NOTCH3-201ENST00000263388 HERC2O95714 4834 aa4.7□□□□□ -1.66
NOTCH3-201ENST00000263388 KRTAP6-2Q3LI66 62 aa4.69□□□□□ -1.66
NOTCH3-201ENST00000263388 KIAA1109Q2LD37 5005 aa4.67□□□□□ -1.66
NOTCH3-201ENST00000263388 BIRC6Q9NR09 4857 aa4.66□□□□□ -1.66
NOTCH3-201ENST00000263388 KRTAP20-1Q3LI63 56 aa4.64□□□□□ -1.67
NOTCH3-201ENST00000263388 KRTAP6-1Q3LI64 71 aa4.62□□□□□ -1.67
NOTCH3-201ENST00000263388 HMCN2Q8NDA2 5059 aa4.61□□□□□ -1.67
NOTCH3-201ENST00000263388 KRTAP9-4Q9BYQ2 154 aa4.61□□□□□ -1.67
NOTCH3-201ENST00000263388 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
NOTCH3-201ENST00000263388 LCE4AQ5TA78 99 aa4.57□□□□□ -1.68
NOTCH3-201ENST00000263388 LCE1CQ5T751 118 aa4.57□□□□□ -1.68
NOTCH3-201ENST00000263388 LCE1EQ5T753 118 aa4.57□□□□□ -1.68
NOTCH3-201ENST00000263388 LCE1FQ5T754 118 aa4.57□□□□□ -1.68
NOTCH3-201ENST00000263388 KRTAP9-6A8MVA2 160 aa4.55□□□□□ -1.68
NOTCH3-201ENST00000263388 HERC1Q15751 4861 aa4.5□□□□□ -1.69
NOTCH3-201ENST00000263388 KRTAP6-3Q3LI67 103 aa4.47□□□□□ -1.69
NOTCH3-201ENST00000263388 KRTAP9-7A8MTY7 169 aa4.43□□□□□ -1.7
NOTCH3-201ENST00000263388 SYNE1Q8NF91 8797 aaKnown RBP4.33□□□□□ -1.72
NOTCH3-201ENST00000263388 KRTAP2-2Q9BYT5 123 aa4.29□□□□□ -1.72
NOTCH3-201ENST00000263388 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.25□□□□□ -1.73
NOTCH3-201ENST00000263388 FSIP2Q5CZC0 6907 aa4.21□□□□□ -1.73
NOTCH3-201ENST00000263388 KRTAP9-9Q9BYP9 154 aa4.1□□□□□ -1.75
NOTCH3-201ENST00000263388 EPPK1P58107 5090 aaKnown RBP4.07□□□□□ -1.76
NOTCH3-201ENST00000263388 MUC2Q02817 5179 aa4.06□□□□□ -1.76
NOTCH3-201ENST00000263388 UBR4Q5T4S7 5183 aa4.05□□□□□ -1.76
NOTCH3-201ENST00000263388 FAT4Q6V0I7 4981 aa4.03□□□□□ -1.76
NOTCH3-201ENST00000263388 RNF213Q63HN8 5207 aa4.01□□□□□ -1.77
NOTCH3-201ENST00000263388 ABCA13Q86UQ4 5058 aa3.93□□□□□ -1.78
NOTCH3-201ENST00000263388 KRTAP4-11Q9BYQ6 195 aa3.88□□□□□ -1.79
NOTCH3-201ENST00000263388 KMT2DO14686 5537 aa3.87□□□□□ -1.79
NOTCH3-201ENST00000263388 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
NOTCH3-201ENST00000263388 KRTAP5-9P26371 169 aa3.8□□□□□ -1.8
NOTCH3-201ENST00000263388 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.82
NOTCH3-201ENST00000263388 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
NOTCH3-201ENST00000263388 FCGBPQ9Y6R7 5405 aaPredicted RBP3.64□□□□□ -1.83
NOTCH3-201ENST00000263388 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
NOTCH3-201ENST00000263388 KRTAP5-4Q6L8H1 288 aa3.48□□□□□ -1.85
NOTCH3-201ENST00000263388 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
NOTCH3-201ENST00000263388 KRTAP5-5Q701N2 237 aaPredicted RBP3.43□□□□□ -1.86
NOTCH3-201ENST00000263388 NEBP20929 6669 aa3.39□□□□□ -1.87
NOTCH3-201ENST00000263388 KRTAP4-12Q9BQ66 201 aa3.33□□□□□ -1.88
NOTCH3-201ENST00000263388 KRTAP4-2Q9BYR5 136 aa3.33□□□□□ -1.88
NOTCH3-201ENST00000263388 USH2AO75445 5202 aa3.29□□□□□ -1.88
NOTCH3-201ENST00000263388 MACF1Q9UPN3 7388 aaKnown RBP3.28□□□□□ -1.89
NOTCH3-201ENST00000263388 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
NOTCH3-201ENST00000263388 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
NOTCH3-201ENST00000263388 MDN1Q9NU22 5596 aa3.1□□□□□ -1.91
NOTCH3-201ENST00000263388 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
NOTCH3-201ENST00000263388 KRTAP5-3Q6L8H2 238 aa2.99□□□□□ -1.93
NOTCH3-201ENST00000263388 KRTAP5-10Q6L8G5 202 aa2.78□□□□□ -1.96
NOTCH3-201ENST00000263388 MUC5ACP98088 5654 aa2.76□□□□□ -1.97
NOTCH3-201ENST00000263388 GPR98Q8WXG9 6306 aa2.67□□□□□ -1.98
NOTCH3-201ENST00000263388 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
NOTCH3-201ENST00000263388 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
NOTCH3-201ENST00000263388 PHGR1C9JFL3 82 aa2.55□□□□□ -2
NOTCH3-201ENST00000263388 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
NOTCH3-201ENST00000263388 HMCN1Q96RW7 5635 aa2.51□□□□□ -2.01
NOTCH3-201ENST00000263388 KRTAP5-11Q6L8G4 156 aa2.47□□□□□ -2.01
NOTCH3-201ENST00000263388 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.02
NOTCH3-201ENST00000263388 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
NOTCH3-201ENST00000263388 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
NOTCH3-201ENST00000263388 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
NOTCH3-201ENST00000263388 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.06
NOTCH3-201ENST00000263388 AHNAKQ09666 5890 aaKnown RBP2.1□□□□□ -2.07
NOTCH3-201ENST00000263388 KRTAP5-7Q6L8G8 165 aa1.75□□□□□ -2.13
NOTCH3-201ENST00000263388 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms