RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 LUZP6Q538Z0 58 aa5.03□□□□□ -1.6
SPTLC1-201ENST00000262554 SPRR5A0A1B0GTR4 108 aa4.98□□□□□ -1.61
SPTLC1-201ENST00000262554 KRTAP12-3P60328 96 aa4.98□□□□□ -1.61
SPTLC1-201ENST00000262554 MT3P25713 68 aa4.88□□□□□ -1.63
SPTLC1-201ENST00000262554 KRTAP5-3Q6L8H2 238 aa4.86□□□□□ -1.63
SPTLC1-201ENST00000262554 KRTAP19-5Q3LI72 72 aa4.85□□□□□ -1.63
SPTLC1-201ENST00000262554 USH2AO75445 5202 aa4.83□□□□□ -1.64
SPTLC1-201ENST00000262554 KRTAP19-6Q3LI70 58 aa4.79□□□□□ -1.64
SPTLC1-201ENST00000262554 KRTAP2-2Q9BYT5 123 aa4.77□□□□□ -1.65
SPTLC1-201ENST00000262554 SSPOA2VEC9 5147 aa4.73□□□□□ -1.65
SPTLC1-201ENST00000262554 KRTAP19-7Q3SYF9 63 aa4.69□□□□□ -1.66
SPTLC1-201ENST00000262554 LCE3CQ5T5A8 94 aa4.69□□□□□ -1.66
SPTLC1-201ENST00000262554 KMT2DO14686 5537 aa4.62□□□□□ -1.67
SPTLC1-201ENST00000262554 MT1EP04732 61 aa4.59□□□□□ -1.67
SPTLC1-201ENST00000262554 MT1LQ93083 61 aa4.55□□□□□ -1.68
SPTLC1-201ENST00000262554 FSIP2Q5CZC0 6907 aa4.48□□□□□ -1.69
SPTLC1-201ENST00000262554 LCE1FQ5T754 118 aa4.47□□□□□ -1.69
SPTLC1-201ENST00000262554 KRTAP9-6A8MVA2 160 aa4.43□□□□□ -1.7
SPTLC1-201ENST00000262554 FCGBPQ9Y6R7 5405 aaPredicted RBP4.39□□□□□ -1.71
SPTLC1-201ENST00000262554 KRTAP19-3Q7Z4W3 81 aa4.36□□□□□ -1.71
SPTLC1-201ENST00000262554 MT1GP13640 62 aa4.35□□□□□ -1.71
SPTLC1-201ENST00000262554 CRCT1Q9UGL9 99 aa4.34□□□□□ -1.71
SPTLC1-201ENST00000262554 SPRR2FQ96RM1 72 aa4.31□□□□□ -1.72
SPTLC1-201ENST00000262554 MT1MQ8N339 61 aa4.3□□□□□ -1.72
SPTLC1-201ENST00000262554 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
SPTLC1-201ENST00000262554 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
SPTLC1-201ENST00000262554 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
SPTLC1-201ENST00000262554 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
SPTLC1-201ENST00000262554 INE1O15225 51 aa4.21□□□□□ -1.74
SPTLC1-201ENST00000262554 MUC12Q9UKN1 5478 aa4.17□□□□□ -1.74
SPTLC1-201ENST00000262554 MACF1Q9UPN3 7388 aaKnown RBP4.13□□□□□ -1.75
SPTLC1-201ENST00000262554 KRTAP5-9P26371 169 aa4.13□□□□□ -1.75
SPTLC1-201ENST00000262554 LCE1EQ5T753 118 aa4.09□□□□□ -1.76
SPTLC1-201ENST00000262554 SPRR2EP22531 72 aa4.01□□□□□ -1.77
SPTLC1-201ENST00000262554 SPRR2BP35325 72 aa4.01□□□□□ -1.77
SPTLC1-201ENST00000262554 SPRR2AP35326 72 aa4.01□□□□□ -1.77
SPTLC1-201ENST00000262554 SYNE2Q8WXH0 6885 aaKnown RBP3.93□□□□□ -1.78
SPTLC1-201ENST00000262554 KRTAP6-3Q3LI67 103 aa3.92□□□□□ -1.78
SPTLC1-201ENST00000262554 DSTQ03001 7570 aaKnown RBP3.89□□□□□ -1.79
SPTLC1-201ENST00000262554 KRTAP5-11Q6L8G4 156 aa3.88□□□□□ -1.79
SPTLC1-201ENST00000262554 MT1AP04731 61 aa3.86□□□□□ -1.79
SPTLC1-201ENST00000262554 SPRR2DP22532 72 aa3.86□□□□□ -1.79
SPTLC1-201ENST00000262554 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
SPTLC1-201ENST00000262554 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
SPTLC1-201ENST00000262554 KRTAP5-5Q701N2 237 aaPredicted RBP3.84□□□□□ -1.8
SPTLC1-201ENST00000262554 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
SPTLC1-201ENST00000262554 KRTAP12-4P60329 112 aa3.67□□□□□ -1.82
SPTLC1-201ENST00000262554 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
SPTLC1-201ENST00000262554 LCE3DQ9BYE3 92 aa3.57□□□□□ -1.84
SPTLC1-201ENST00000262554 KRTAP20-1Q3LI63 56 aa3.56□□□□□ -1.84
SPTLC1-201ENST00000262554 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
SPTLC1-201ENST00000262554 KRTAP5-4Q6L8H1 288 aa3.52□□□□□ -1.85
SPTLC1-201ENST00000262554 NEBP20929 6669 aa3.5□□□□□ -1.85
SPTLC1-201ENST00000262554 KRTAP6-2Q3LI66 62 aa3.49□□□□□ -1.85
SPTLC1-201ENST00000262554 MT4P47944 62 aa3.35□□□□□ -1.87
SPTLC1-201ENST00000262554 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
SPTLC1-201ENST00000262554 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
SPTLC1-201ENST00000262554 PRM1P04553 51 aa3.2□□□□□ -1.9
SPTLC1-201ENST00000262554 GPR98Q8WXG9 6306 aa3.18□□□□□ -1.9
SPTLC1-201ENST00000262554 KRTAP5-1Q6L8H4 278 aa3.18□□□□□ -1.9
SPTLC1-201ENST00000262554 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
SPTLC1-201ENST00000262554 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
SPTLC1-201ENST00000262554 KRTAP4-4Q9BYR3 166 aa3.01□□□□□ -1.93
SPTLC1-201ENST00000262554 LCE1BQ5T7P3 118 aa2.81□□□□□ -1.96
SPTLC1-201ENST00000262554 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
SPTLC1-201ENST00000262554 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
SPTLC1-201ENST00000262554 MUC5ACP98088 5654 aa2.74□□□□□ -1.97
SPTLC1-201ENST00000262554 KRTAP5-7Q6L8G8 165 aa2.69□□□□□ -1.98
SPTLC1-201ENST00000262554 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
SPTLC1-201ENST00000262554 KRTAP5-8O75690 187 aa2.66□□□□□ -1.98
SPTLC1-201ENST00000262554 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
SPTLC1-201ENST00000262554 AHNAKQ09666 5890 aaKnown RBP2.39□□□□□ -2.03
SPTLC1-201ENST00000262554 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
SPTLC1-201ENST00000262554 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
SPTLC1-201ENST00000262554 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
SPTLC1-201ENST00000262554 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
SPTLC1-201ENST00000262554 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 10.2 ms