RNA–Protein interactions for RNA: ENST00000261963.11

MCF2L-201, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-201ENST00000261963 MT1LQ93083 61 aa7.84□□□□□ -1.15
MCF2L-201ENST00000261963 KRTAP9-2Q9BYQ4 174 aa7.82□□□□□ -1.16
MCF2L-201ENST00000261963 KRTAP19-4Q3LI73 84 aa7.77□□□□□ -1.17
MCF2L-201ENST00000261963 FCGBPQ9Y6R7 5405 aaPredicted RBP7.68□□□□□ -1.18
MCF2L-201ENST00000261963 MUC12Q9UKN1 5478 aa7.54□□□□□ -1.2
MCF2L-201ENST00000261963 CRCT1Q9UGL9 99 aa7.52□□□□□ -1.2
MCF2L-201ENST00000261963 KRTAP4-3Q9BYR4 195 aa7.43□□□□□ -1.22
MCF2L-201ENST00000261963 KRTAP19-3Q7Z4W3 81 aa7.38□□□□□ -1.23
MCF2L-201ENST00000261963 MT1MQ8N339 61 aa7.37□□□□□ -1.23
MCF2L-201ENST00000261963 LOC100996750A0A140TA64 210 aa7.35□□□□□ -1.23
MCF2L-201ENST00000261963 MT1GP13640 62 aa7.33□□□□□ -1.24
MCF2L-201ENST00000261963 MACF1Q9UPN3 7388 aaKnown RBP7.33□□□□□ -1.24
MCF2L-201ENST00000261963 SYNE2Q8WXH0 6885 aaKnown RBP7.18□□□□□ -1.26
MCF2L-201ENST00000261963 KRTAP9-6A0A140TA67 174 aa7.18□□□□□ -1.26
MCF2L-201ENST00000261963 LCE5AQ5TCM9 118 aa7.17□□□□□ -1.26
MCF2L-201ENST00000261963 SPRR2FQ96RM1 72 aa7.17□□□□□ -1.26
MCF2L-201ENST00000261963 KRTAP12-4P60329 112 aa7.12□□□□□ -1.27
MCF2L-201ENST00000261963 DSTQ03001 7570 aaKnown RBP7.06□□□□□ -1.28
MCF2L-201ENST00000261963 MDN1Q9NU22 5596 aa6.97□□□□□ -1.29
MCF2L-201ENST00000261963 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.97□□□□□ -1.29
MCF2L-201ENST00000261963 KRTAP5-9P26371 169 aa6.86□□□□□ -1.31
MCF2L-201ENST00000261963 LCE1AQ5T7P2 110 aa6.75□□□□□ -1.33
MCF2L-201ENST00000261963 KRTAP6-3Q3LI67 103 aa6.74□□□□□ -1.33
MCF2L-201ENST00000261963 LCE3BQ5TA77 95 aa6.68□□□□□ -1.34
MCF2L-201ENST00000261963 SPRR2EP22531 72 aa6.66□□□□□ -1.34
MCF2L-201ENST00000261963 SPRR2BP35325 72 aa6.66□□□□□ -1.34
MCF2L-201ENST00000261963 SPRR2AP35326 72 aa6.66□□□□□ -1.34
MCF2L-201ENST00000261963 KRTAP6-1Q3LI64 71 aa6.65□□□□□ -1.34
MCF2L-201ENST00000261963 MT1AP04731 61 aa6.59□□□□□ -1.35
MCF2L-201ENST00000261963 KRTAP9-7A8MTY7 169 aa6.59□□□□□ -1.35
MCF2L-201ENST00000261963 KRTAP5-5Q701N2 237 aaPredicted RBP6.56□□□□□ -1.36
MCF2L-201ENST00000261963 KRTAP4-9Q9BYQ8 210 aa6.55□□□□□ -1.36
MCF2L-201ENST00000261963 SYNE1Q8NF91 8797 aaKnown RBP6.47□□□□□ -1.37
MCF2L-201ENST00000261963 SPRR2DP22532 72 aa6.4□□□□□ -1.39
MCF2L-201ENST00000261963 LCE3DQ9BYE3 92 aa6.4□□□□□ -1.39
MCF2L-201ENST00000261963 LCE3EQ5T5B0 92 aa6.38□□□□□ -1.39
MCF2L-201ENST00000261963 PRM1P04553 51 aa6.37□□□□□ -1.39
MCF2L-201ENST00000261963 NEBP20929 6669 aa6.36□□□□□ -1.39
MCF2L-201ENST00000261963 KRTAP9-4Q9BYQ2 154 aa6.21□□□□□ -1.42
MCF2L-201ENST00000261963 KRTAP6-2Q3LI66 62 aa5.99□□□□□ -1.45
MCF2L-201ENST00000261963 MT3P25713 68 aa5.91□□□□□ -1.46
MCF2L-201ENST00000261963 KRTAP4-6Q9BYQ5 205 aa5.87□□□□□ -1.47
MCF2L-201ENST00000261963 KRTAP5-4Q6L8H1 288 aa5.85□□□□□ -1.47
MCF2L-201ENST00000261963 KRTAP20-1Q3LI63 56 aa5.82□□□□□ -1.48
MCF2L-201ENST00000261963 KRTAP2-2Q9BYT5 123 aa5.78□□□□□ -1.48
MCF2L-201ENST00000261963 OBSCNQ5VST9 7968 aa5.75□□□□□ -1.49
MCF2L-201ENST00000261963 MT4P47944 62 aa5.64□□□□□ -1.51
MCF2L-201ENST00000261963 LCE4AQ5TA78 99 aa5.58□□□□□ -1.52
MCF2L-201ENST00000261963 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
MCF2L-201ENST00000261963 KRTAP20-2Q3LI61 65 aa5.47□□□□□ -1.53
MCF2L-201ENST00000261963 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.53
MCF2L-201ENST00000261963 KRTAP5-2Q701N4 177 aa5.44□□□□□ -1.54
MCF2L-201ENST00000261963 KRTAP5-3Q6L8H2 238 aa5.24□□□□□ -1.57
MCF2L-201ENST00000261963 LCE1EQ5T753 118 aa5.12□□□□□ -1.59
MCF2L-201ENST00000261963 MUC5ACP98088 5654 aa5.08□□□□□ -1.6
MCF2L-201ENST00000261963 KRTAP4-12Q9BQ66 201 aa4.87□□□□□ -1.63
MCF2L-201ENST00000261963 KRTAP9-9Q9BYP9 154 aa4.8□□□□□ -1.64
MCF2L-201ENST00000261963 AHNAK2Q8IVF2 5795 aa4.78□□□□□ -1.64
MCF2L-201ENST00000261963 LCE1BQ5T7P3 118 aa4.77□□□□□ -1.65
MCF2L-201ENST00000261963 KRTAP4-11Q9BYQ6 195 aa4.75□□□□□ -1.65
MCF2L-201ENST00000261963 KRTAP5-10Q6L8G5 202 aa4.67□□□□□ -1.66
MCF2L-201ENST00000261963 KRTAP4-2Q9BYR5 136 aa4.66□□□□□ -1.66
MCF2L-201ENST00000261963 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
MCF2L-201ENST00000261963 LCE1CQ5T751 118 aa4.62□□□□□ -1.67
MCF2L-201ENST00000261963 KRTAP5-8O75690 187 aa4.5□□□□□ -1.69
MCF2L-201ENST00000261963 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.37□□□□□ -1.71
MCF2L-201ENST00000261963 GPR98Q8WXG9 6306 aa4.35□□□□□ -1.71
MCF2L-201ENST00000261963 KRTAP21-2Q3LI59 83 aa4.32□□□□□ -1.72
MCF2L-201ENST00000261963 KRTAP5-7Q6L8G8 165 aa4.31□□□□□ -1.72
MCF2L-201ENST00000261963 KRTAP21-1Q3LI58 79 aa4.07□□□□□ -1.76
MCF2L-201ENST00000261963 MUC5BQ9HC84 5762 aaPredicted RBP4.01□□□□□ -1.77
MCF2L-201ENST00000261963 KRTAP5-11Q6L8G4 156 aa3.99□□□□□ -1.77
MCF2L-201ENST00000261963 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
MCF2L-201ENST00000261963 KRTAP4-4Q9BYR3 166 aa3.91□□□□□ -1.78
MCF2L-201ENST00000261963 MUC19Q7Z5P9 8384 aa3.66□□□□□ -1.82
MCF2L-201ENST00000261963 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
MCF2L-201ENST00000261963 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
MCF2L-201ENST00000261963 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 138.7 ms