RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 KRTAP4-11Q9BYQ6 195 aa2.68□□□□□ -1.98
CSDE1-201ENST00000261443 LCE3CQ5T5A8 94 aa2.68□□□□□ -1.98
CSDE1-201ENST00000261443 KRTAP4-2Q9BYR5 136 aa2.67□□□□□ -1.98
CSDE1-201ENST00000261443 KRTAP9-3Q9BYQ3 159 aa2.64□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP19-5Q3LI72 72 aa2.63□□□□□ -1.99
CSDE1-201ENST00000261443 LCE5AQ5TCM9 118 aa2.62□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP9-6A8MVA2 160 aa2.6□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP2-3P0C7H8 128 aa2.59□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP2-4Q9BYR9 128 aa2.59□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP2-1Q9BYU5 128 aa2.59□□□□□ -1.99
CSDE1-201ENST00000261443 CRCT1Q9UGL9 99 aa2.59□□□□□ -1.99
CSDE1-201ENST00000261443 KRTAP5-3Q6L8H2 238 aa2.56□□□□□ -2
CSDE1-201ENST00000261443 DSTQ03001 7570 aaKnown RBP2.55□□□□□ -2
CSDE1-201ENST00000261443 OBSCNQ5VST9 7968 aa2.5□□□□□ -2.01
CSDE1-201ENST00000261443 SSPOA2VEC9 5147 aa2.48□□□□□ -2.01
CSDE1-201ENST00000261443 FCGBPQ9Y6R7 5405 aaPredicted RBP2.48□□□□□ -2.01
CSDE1-201ENST00000261443 MUC12Q9UKN1 5478 aa2.48□□□□□ -2.01
CSDE1-201ENST00000261443 KRTAP9-7A8MTY7 169 aa2.43□□□□□ -2.02
CSDE1-201ENST00000261443 KRTAP19-7Q3SYF9 63 aa2.42□□□□□ -2.02
CSDE1-201ENST00000261443 SYNE1Q8NF91 8797 aaKnown RBP2.4□□□□□ -2.02
CSDE1-201ENST00000261443 KRTAP12-4P60329 112 aa2.38□□□□□ -2.03
CSDE1-201ENST00000261443 MT1LQ93083 61 aa2.38□□□□□ -2.03
CSDE1-201ENST00000261443 MT1EP04732 61 aa2.33□□□□□ -2.04
CSDE1-201ENST00000261443 HMCN1Q96RW7 5635 aa2.31□□□□□ -2.04
CSDE1-201ENST00000261443 KRTAP6-3Q3LI67 103 aa2.3□□□□□ -2.04
CSDE1-201ENST00000261443 KRTAP19-6Q3LI70 58 aa2.3□□□□□ -2.04
CSDE1-201ENST00000261443 SYNE2Q8WXH0 6885 aaKnown RBP2.28□□□□□ -2.04
CSDE1-201ENST00000261443 KRTAP4-3Q9BYR4 195 aa2.28□□□□□ -2.04
CSDE1-201ENST00000261443 MT1GP13640 62 aa2.27□□□□□ -2.05
CSDE1-201ENST00000261443 MDN1Q9NU22 5596 aa2.24□□□□□ -2.05
CSDE1-201ENST00000261443 MACF1Q9UPN3 7388 aaKnown RBP2.2□□□□□ -2.06
CSDE1-201ENST00000261443 LCE4AQ5TA78 99 aa2.18□□□□□ -2.06
CSDE1-201ENST00000261443 KRTAP5-9P26371 169 aa2.18□□□□□ -2.06
CSDE1-201ENST00000261443 MT1MQ8N339 61 aa2.17□□□□□ -2.06
CSDE1-201ENST00000261443 NEBP20929 6669 aa2.15□□□□□ -2.07
CSDE1-201ENST00000261443 PRM1P04553 51 aa2.14□□□□□ -2.07
CSDE1-201ENST00000261443 KRTAP20-1Q3LI63 56 aa2.13□□□□□ -2.07
CSDE1-201ENST00000261443 KRTAP19-3Q7Z4W3 81 aa2.13□□□□□ -2.07
CSDE1-201ENST00000261443 MT1AP04731 61 aa2.12□□□□□ -2.07
CSDE1-201ENST00000261443 LCE3DQ9BYE3 92 aa2.12□□□□□ -2.07
CSDE1-201ENST00000261443 LCE3EQ5T5B0 92 aa2.1□□□□□ -2.07
CSDE1-201ENST00000261443 KRTAP5-5Q701N2 237 aaPredicted RBP2.1□□□□□ -2.07
CSDE1-201ENST00000261443 MUC5BQ9HC84 5762 aaPredicted RBP2.08□□□□□ -2.08
CSDE1-201ENST00000261443 MT3P25713 68 aa2.05□□□□□ -2.08
CSDE1-201ENST00000261443 SPRR2FQ96RM1 72 aa2.05□□□□□ -2.08
CSDE1-201ENST00000261443 KRTAP6-1Q3LI64 71 aa2.04□□□□□ -2.08
CSDE1-201ENST00000261443 GPR98Q8WXG9 6306 aa2.02□□□□□ -2.09
CSDE1-201ENST00000261443 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.02□□□□□ -2.09
CSDE1-201ENST00000261443 LCE1EQ5T753 118 aa2□□□□□ -2.09
CSDE1-201ENST00000261443 KRTAP2-2Q9BYT5 123 aa2□□□□□ -2.09
CSDE1-201ENST00000261443 KRTAP6-2Q3LI66 62 aa1.98□□□□□ -2.09
CSDE1-201ENST00000261443 LCE1AQ5T7P2 110 aa1.96□□□□□ -2.09
CSDE1-201ENST00000261443 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
CSDE1-201ENST00000261443 LCE1FQ5T754 118 aa1.89□□□□□ -2.11
CSDE1-201ENST00000261443 SPRR2EP22531 72 aa1.87□□□□□ -2.11
CSDE1-201ENST00000261443 SPRR2BP35325 72 aa1.87□□□□□ -2.11
CSDE1-201ENST00000261443 SPRR2AP35326 72 aa1.87□□□□□ -2.11
CSDE1-201ENST00000261443 SPRR2DP22532 72 aa1.83□□□□□ -2.12
CSDE1-201ENST00000261443 AHNAKQ09666 5890 aaKnown RBP1.81□□□□□ -2.12
CSDE1-201ENST00000261443 KRTAP5-7Q6L8G8 165 aa1.78□□□□□ -2.13
CSDE1-201ENST00000261443 KRTAP5-10Q6L8G5 202 aa1.77□□□□□ -2.13
CSDE1-201ENST00000261443 KRTAP5-4Q6L8H1 288 aa1.74□□□□□ -2.13
CSDE1-201ENST00000261443 AHNAK2Q8IVF2 5795 aa1.66□□□□□ -2.14
CSDE1-201ENST00000261443 MT4P47944 62 aa1.65□□□□□ -2.14
CSDE1-201ENST00000261443 KRTAP5-11Q6L8G4 156 aa1.64□□□□□ -2.15
CSDE1-201ENST00000261443 KRTAP5-2Q701N4 177 aa1.6□□□□□ -2.15
CSDE1-201ENST00000261443 KRTAP5-1Q6L8H4 278 aa1.57□□□□□ -2.16
CSDE1-201ENST00000261443 KRTAP20-2Q3LI61 65 aa1.56□□□□□ -2.16
CSDE1-201ENST00000261443 MUC5ACP98088 5654 aa1.56□□□□□ -2.16
CSDE1-201ENST00000261443 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
CSDE1-201ENST00000261443 LCE1BQ5T7P3 118 aa1.48□□□□□ -2.17
CSDE1-201ENST00000261443 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
CSDE1-201ENST00000261443 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
CSDE1-201ENST00000261443 LCE1CQ5T751 118 aa1.31□□□□□ -2.2
CSDE1-201ENST00000261443 KRTAP21-2Q3LI59 83 aa1.29□□□□□ -2.2
CSDE1-201ENST00000261443 PHGR1C9JFL3 82 aa1□□□□□ -2.25
CSDE1-201ENST00000261443 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 6.4 ms