RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 MT1LQ93083 61 aa3.35□□□□□ -1.87
MSH6-201ENST00000234420 KIAA1109Q2LD37 5005 aa3.32□□□□□ -1.88
MSH6-201ENST00000234420 MT1EP04732 61 aa3.26□□□□□ -1.89
MSH6-201ENST00000234420 HYDINQ4G0P3 5121 aa3.25□□□□□ -1.89
MSH6-201ENST00000234420 MT1MQ8N339 61 aa3.25□□□□□ -1.89
MSH6-201ENST00000234420 LCE2AQ5TA79 106 aaPredicted RBP3.22□□□□□ -1.89
MSH6-201ENST00000234420 MUC17Q685J3 4493 aa3.21□□□□□ -1.9
MSH6-201ENST00000234420 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
MSH6-201ENST00000234420 RYR3Q15413 4870 aa3.2□□□□□ -1.9
MSH6-201ENST00000234420 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
MSH6-201ENST00000234420 KRTAP2-3P0C7H8 128 aa3.16□□□□□ -1.9
MSH6-201ENST00000234420 KRTAP2-4Q9BYR9 128 aa3.16□□□□□ -1.9
MSH6-201ENST00000234420 RYR2Q92736 4967 aa3.16□□□□□ -1.9
MSH6-201ENST00000234420 KMT2CQ8NEZ4 4911 aaKnown RBP3.14□□□□□ -1.91
MSH6-201ENST00000234420 KRTAP6-2Q3LI66 62 aa3.1□□□□□ -1.91
MSH6-201ENST00000234420 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.07□□□□□ -1.92
MSH6-201ENST00000234420 LRP2P98164 4655 aa3.06□□□□□ -1.92
MSH6-201ENST00000234420 HERC2O95714 4834 aa3.06□□□□□ -1.92
MSH6-201ENST00000234420 KRTAP9-9Q9BYP9 154 aa3.05□□□□□ -1.92
MSH6-201ENST00000234420 KRTAP2-1Q9BYU5 128 aa3.05□□□□□ -1.92
MSH6-201ENST00000234420 EPPK1P58107 5090 aaKnown RBP3.04□□□□□ -1.92
MSH6-201ENST00000234420 BIRC6Q9NR09 4857 aa3.02□□□□□ -1.93
MSH6-201ENST00000234420 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
MSH6-201ENST00000234420 ABCA13Q86UQ4 5058 aa2.98□□□□□ -1.93
MSH6-201ENST00000234420 MT1AP04731 61 aa2.96□□□□□ -1.94
MSH6-201ENST00000234420 KRTAP20-2Q3LI61 65 aa2.95□□□□□ -1.94
MSH6-201ENST00000234420 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
MSH6-201ENST00000234420 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
MSH6-201ENST00000234420 KRTAP6-3Q3LI67 103 aa2.89□□□□□ -1.95
MSH6-201ENST00000234420 FSIP2Q5CZC0 6907 aa2.88□□□□□ -1.95
MSH6-201ENST00000234420 KRTAP4-6Q9BYQ5 205 aa2.87□□□□□ -1.95
MSH6-201ENST00000234420 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
MSH6-201ENST00000234420 OBSCNQ5VST9 7968 aa2.83□□□□□ -1.96
MSH6-201ENST00000234420 HERC1Q15751 4861 aa2.82□□□□□ -1.96
MSH6-201ENST00000234420 KRTAP9-4Q9BYQ2 154 aa2.82□□□□□ -1.96
MSH6-201ENST00000234420 RNF213Q63HN8 5207 aa2.82□□□□□ -1.96
MSH6-201ENST00000234420 KRTAP9-6A8MVA2 160 aa2.79□□□□□ -1.96
MSH6-201ENST00000234420 KRTAP4-12Q9BQ66 201 aa2.78□□□□□ -1.96
MSH6-201ENST00000234420 KRTAP4-2Q9BYR5 136 aa2.78□□□□□ -1.96
MSH6-201ENST00000234420 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
MSH6-201ENST00000234420 UBR4Q5T4S7 5183 aa2.77□□□□□ -1.97
MSH6-201ENST00000234420 KRTAP19-2Q3LHN2 52 aa2.73□□□□□ -1.97
MSH6-201ENST00000234420 KRTAP4-11Q9BYQ6 195 aa2.73□□□□□ -1.97
MSH6-201ENST00000234420 HMCN2Q8NDA2 5059 aa2.69□□□□□ -1.98
MSH6-201ENST00000234420 MUC2Q02817 5179 aa2.68□□□□□ -1.98
MSH6-201ENST00000234420 FAT4Q6V0I7 4981 aa2.67□□□□□ -1.98
MSH6-201ENST00000234420 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
MSH6-201ENST00000234420 DSTQ03001 7570 aaKnown RBP2.45□□□□□ -2.02
MSH6-201ENST00000234420 USH2AO75445 5202 aa2.4□□□□□ -2.03
MSH6-201ENST00000234420 MACF1Q9UPN3 7388 aaKnown RBP2.39□□□□□ -2.03
MSH6-201ENST00000234420 KMT2DO14686 5537 aa2.36□□□□□ -2.03
MSH6-201ENST00000234420 FCGBPQ9Y6R7 5405 aaPredicted RBP2.35□□□□□ -2.03
MSH6-201ENST00000234420 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
MSH6-201ENST00000234420 SSPOA2VEC9 5147 aa2.24□□□□□ -2.05
MSH6-201ENST00000234420 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
MSH6-201ENST00000234420 KRTAP5-5Q701N2 237 aaPredicted RBP2.18□□□□□ -2.06
MSH6-201ENST00000234420 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
MSH6-201ENST00000234420 MUC12Q9UKN1 5478 aa2.11□□□□□ -2.07
MSH6-201ENST00000234420 MDN1Q9NU22 5596 aa2.09□□□□□ -2.07
MSH6-201ENST00000234420 NEBP20929 6669 aa2.08□□□□□ -2.08
MSH6-201ENST00000234420 KRTAP5-4Q6L8H1 288 aa2.07□□□□□ -2.08
MSH6-201ENST00000234420 KRTAP5-9P26371 169 aa2□□□□□ -2.09
MSH6-201ENST00000234420 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
MSH6-201ENST00000234420 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
MSH6-201ENST00000234420 KRTAP5-8O75690 187 aa1.83□□□□□ -2.12
MSH6-201ENST00000234420 AHNAK2Q8IVF2 5795 aa1.77□□□□□ -2.13
MSH6-201ENST00000234420 KRTAP5-2Q701N4 177 aa1.71□□□□□ -2.14
MSH6-201ENST00000234420 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
MSH6-201ENST00000234420 MUC5ACP98088 5654 aa1.65□□□□□ -2.14
MSH6-201ENST00000234420 KRTAP5-10Q6L8G5 202 aa1.61□□□□□ -2.15
MSH6-201ENST00000234420 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
MSH6-201ENST00000234420 KRTAP5-1Q6L8H4 278 aa1.4□□□□□ -2.19
MSH6-201ENST00000234420 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
MSH6-201ENST00000234420 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
MSH6-201ENST00000234420 KRTAP5-11Q6L8G4 156 aa1.21□□□□□ -2.22
MSH6-201ENST00000234420 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.17□□□□□ -2.22
MSH6-201ENST00000234420 KRTAP5-7Q6L8G8 165 aa1.01□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 63.7 ms