RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 C8orf87E5RJ46 101 aa2.61□□□□□ -1.99
VPS29-212ENST00000621131 SPINK1P00995 79 aa2.61□□□□□ -1.99
VPS29-212ENST00000621131 RPS29P62273 56 aaKnown RBP2.61□□□□□ -1.99
VPS29-212ENST00000621131 Q5XG85 94 aa2.61□□□□□ -1.99
VPS29-212ENST00000621131 WFDC13Q8IUB5 93 aa2.61□□□□□ -1.99
VPS29-212ENST00000621131 LINC00304Q8N9R0 145 aa2.61□□□□□ -1.99
VPS29-212ENST00000621131 IGHV6-1A0A0B4J1U7 121 aa2.6□□□□□ -1.99
VPS29-212ENST00000621131 hDV103S1A0JD37 113 aa2.6□□□□□ -1.99
VPS29-212ENST00000621131 KRTAP13-2Q52LG2 175 aa2.6□□□□□ -1.99
VPS29-212ENST00000621131 CCDC179H3BU77 68 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 NDUFC1O43677 76 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 MP68P56378 58 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 Q5VSD8 79 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 Q96NJ1 140 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 TP53AIP1Q9HCN2 124 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 C8orf17Q9NRJ1 99 aa2.59□□□□□ -1.99
VPS29-212ENST00000621131 MMP24-AS1A0A0U1RRL7 71 aa2.58□□□□□ -2
VPS29-212ENST00000621131 H3BPC8 53 aa2.58□□□□□ -2
VPS29-212ENST00000621131 NDUFS5O43920 106 aa2.58□□□□□ -2
VPS29-212ENST00000621131 C5orf47Q569G3 176 aa2.58□□□□□ -2
VPS29-212ENST00000621131 C20orf197Q8N268 126 aa2.58□□□□□ -2
VPS29-212ENST00000621131 TMEM254Q8TBM7 123 aa2.58□□□□□ -2
VPS29-212ENST00000621131 TMEM258P61165 79 aa2.57□□□□□ -2
VPS29-212ENST00000621131 MRPL34Q9BQ48 92 aaKnown RBP2.57□□□□□ -2
VPS29-212ENST00000621131 ATP5EP56381 51 aaPredicted RBP2.56□□□□□ -2
VPS29-212ENST00000621131 LINC00313P59037 77 aa2.56□□□□□ -2
VPS29-212ENST00000621131 KLKP1Q107X0 134 aa2.56□□□□□ -2
VPS29-212ENST00000621131 C1orf195Q5TG92 126 aa2.56□□□□□ -2
VPS29-212ENST00000621131 TRAV22A0A0B4J277 110 aa2.55□□□□□ -2
VPS29-212ENST00000621131 H0Y9P7 68 aa2.55□□□□□ -2
VPS29-212ENST00000621131 KRTAP10-4P60372 401 aaPredicted RBP2.55□□□□□ -2
VPS29-212ENST00000621131 A0A0U1RQV1 116 aa2.54□□□□□ -2
VPS29-212ENST00000621131 SNURFQ9Y675 71 aa2.54□□□□□ -2
VPS29-212ENST00000621131 FAM236DA0A1B0GTK5 79 aa2.53□□□□□ -2
VPS29-212ENST00000621131 FAM236CP0DP71 79 aa2.53□□□□□ -2
VPS29-212ENST00000621131 LOC101927531A0A1B0GV80 90 aa2.52□□□□□ -2.01
VPS29-212ENST00000621131 C1orf64Q8NEQ6 169 aa2.52□□□□□ -2.01
VPS29-212ENST00000621131 LINC00208Q96KT6 92 aa2.52□□□□□ -2.01
VPS29-212ENST00000621131 OXTP01178 125 aa2.51□□□□□ -2.01
VPS29-212ENST00000621131 FP248Q71RG6 208 aaPredicted RBP2.51□□□□□ -2.01
VPS29-212ENST00000621131 CRCT1Q9UGL9 99 aa2.51□□□□□ -2.01
VPS29-212ENST00000621131 H7BZZ5 65 aa2.5□□□□□ -2.01
VPS29-212ENST00000621131 SERP1Q9Y6X1 66 aa2.49□□□□□ -2.01
VPS29-212ENST00000621131 SPANXA2-OT1Q8N9U9 137 aa2.48□□□□□ -2.01
VPS29-212ENST00000621131 ZCCHC13Q8WW36 166 aaKnown RBP2.48□□□□□ -2.01
VPS29-212ENST00000621131 C9orf92A6NGG3 77 aa2.47□□□□□ -2.01
VPS29-212ENST00000621131 RPS28P62857 69 aaKnown RBP2.47□□□□□ -2.01
VPS29-212ENST00000621131 RETNLBQ9BQ08 111 aa2.47□□□□□ -2.01
VPS29-212ENST00000621131 CYSTM1Q9H1C7 97 aa2.47□□□□□ -2.01
VPS29-212ENST00000621131 PCOTHQ58A44 107 aa2.46□□□□□ -2.02
VPS29-212ENST00000621131 Q5W150 140 aa2.46□□□□□ -2.02
VPS29-212ENST00000621131 C7orf65Q6ZTY9 151 aa2.46□□□□□ -2.02
VPS29-212ENST00000621131 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
VPS29-212ENST00000621131 ATP11AUNQ6ZP68 121 aa2.45□□□□□ -2.02
VPS29-212ENST00000621131 C20orf166-AS1Q96NR2 134 aa2.45□□□□□ -2.02
VPS29-212ENST00000621131 CYP4F30PQ9H0H9 118 aa2.45□□□□□ -2.02
VPS29-212ENST00000621131 A8MUU9 505 aa2.44□□□□□ -2.02
VPS29-212ENST00000621131 MT1HL1P0DM35 61 aa2.43□□□□□ -2.02
VPS29-212ENST00000621131 SMIM26A0A096LP01 95 aa2.42□□□□□ -2.02
VPS29-212ENST00000621131 CHKB-CPT1BH3BT56 60 aa2.42□□□□□ -2.02
VPS29-212ENST00000621131 ACYP2P14621 99 aa2.42□□□□□ -2.02
VPS29-212ENST00000621131 V9GYY9 64 aa2.42□□□□□ -2.02
VPS29-212ENST00000621131 RPL37P61927 97 aaKnown RBP2.41□□□□□ -2.02
VPS29-212ENST00000621131 LPAP08519 4548 aa2.41□□□□□ -2.02
VPS29-212ENST00000621131 A8MUN3 132 aa2.4□□□□□ -2.03
VPS29-212ENST00000621131 HRES1P13985 223 aa2.4□□□□□ -2.03
VPS29-212ENST00000621131 TPRXLQ17RH7 258 aa2.4□□□□□ -2.03
VPS29-212ENST00000621131 COA5Q86WW8 74 aa2.4□□□□□ -2.03
VPS29-212ENST00000621131 SPTSSBQ8NFR3 76 aa2.4□□□□□ -2.03
VPS29-212ENST00000621131 DMAC1Q96GE9 116 aa2.39□□□□□ -2.03
VPS29-212ENST00000621131 SPINK7P58062 85 aa2.37□□□□□ -2.03
VPS29-212ENST00000621131 SSPOA2VEC9 5147 aa2.37□□□□□ -2.03
VPS29-212ENST00000621131 PRR15LQ9BU68 103 aa2.36□□□□□ -2.03
VPS29-212ENST00000621131 C4orf26Q17RF5 130 aa2.35□□□□□ -2.03
VPS29-212ENST00000621131 Q1T7F1 81 aa2.35□□□□□ -2.03
VPS29-212ENST00000621131 RBM12B-AS1Q9P1G2 102 aa2.35□□□□□ -2.03
VPS29-212ENST00000621131 SEC61GP60059 68 aa2.33□□□□□ -2.04
VPS29-212ENST00000621131 KRTAP12-4P60329 112 aa2.33□□□□□ -2.04
VPS29-212ENST00000621131 COX6B2Q6YFQ2 88 aa2.33□□□□□ -2.04
VPS29-212ENST00000621131 SYNE2Q8WXH0 6885 aaKnown RBP2.32□□□□□ -2.04
VPS29-212ENST00000621131 LINC01558Q9Y6Z2 57 aa2.32□□□□□ -2.04
VPS29-212ENST00000621131 A0A1B0GU69 56 aa2.31□□□□□ -2.04
VPS29-212ENST00000621131 MACF1Q9UPN3 7388 aaKnown RBP2.31□□□□□ -2.04
VPS29-212ENST00000621131 PSPHP1O15172 72 aa2.3□□□□□ -2.04
VPS29-212ENST00000621131 NEBP20929 6669 aa2.3□□□□□ -2.04
VPS29-212ENST00000621131 CAMK2N1Q7Z7J9 78 aa2.29□□□□□ -2.04
VPS29-212ENST00000621131 S4R3F8 94 aa2.29□□□□□ -2.04
VPS29-212ENST00000621131 H1FX-AS1Q4G0G2 97 aa2.28□□□□□ -2.04
VPS29-212ENST00000621131 A6NED7 52 aa2.27□□□□□ -2.05
VPS29-212ENST00000621131 FCGBPQ9Y6R7 5405 aaPredicted RBP2.26□□□□□ -2.05
VPS29-212ENST00000621131 BRK1Q8WUW1 75 aa2.26□□□□□ -2.05
VPS29-212ENST00000621131 MUC17Q685J3 4493 aa2.25□□□□□ -2.05
VPS29-212ENST00000621131 Q5VV11 94 aa2.25□□□□□ -2.05
VPS29-212ENST00000621131 USH2AO75445 5202 aa2.24□□□□□ -2.05
VPS29-212ENST00000621131 UQCR11O14957 56 aa2.24□□□□□ -2.05
VPS29-212ENST00000621131 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
VPS29-212ENST00000621131 CSAG1Q6PB30 78 aa2.24□□□□□ -2.05
VPS29-212ENST00000621131 LCA10Q71F78 164 aa2.24□□□□□ -2.05
VPS29-212ENST00000621131 PRO0628Q9UI54 55 aa2.23□□□□□ -2.05
VPS29-212ENST00000621131 CDC42SE1Q9NRR8 79 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms