RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 C20orf197Q8N268 126 aa2.78□□□□□ -1.96
CPNE3-208ENST00000614678 LCE2BO14633 110 aa2.77□□□□□ -1.97
CPNE3-208ENST00000614678 TRAV7A0A075B6U4 112 aa2.77□□□□□ -1.97
CPNE3-208ENST00000614678 HCG22E2RYF7 251 aa2.77□□□□□ -1.97
CPNE3-208ENST00000614678 PMAIP1Q13794 54 aa2.76□□□□□ -1.97
CPNE3-208ENST00000614678 BRK1Q8WUW1 75 aa2.76□□□□□ -1.97
CPNE3-208ENST00000614678 CASC2Q6XLA1 102 aa2.76□□□□□ -1.97
CPNE3-208ENST00000614678 TMEM254Q8TBM7 123 aa2.76□□□□□ -1.97
CPNE3-208ENST00000614678 Q1T7F1 81 aa2.76□□□□□ -1.97
CPNE3-208ENST00000614678 A0A1B0GW54 56 aa2.75□□□□□ -1.97
CPNE3-208ENST00000614678 RBM12B-AS1Q9P1G2 102 aa2.75□□□□□ -1.97
CPNE3-208ENST00000614678 FCGBPQ9Y6R7 5405 aaPredicted RBP2.75□□□□□ -1.97
CPNE3-208ENST00000614678 SNURFQ9Y675 71 aa2.75□□□□□ -1.97
CPNE3-208ENST00000614678 ATP5EP2Q5VTU8 51 aa2.74□□□□□ -1.97
CPNE3-208ENST00000614678 KRTAP9-3Q9BYQ3 159 aa2.74□□□□□ -1.97
CPNE3-208ENST00000614678 KRTAP3-1Q9BYR8 98 aa2.74□□□□□ -1.97
CPNE3-208ENST00000614678 KRTAP10-10P60014 251 aa2.73□□□□□ -1.97
CPNE3-208ENST00000614678 UBL5Q9BZL1 73 aa2.73□□□□□ -1.97
CPNE3-208ENST00000614678 OCR1Q9BZK8 76 aa2.73□□□□□ -1.97
CPNE3-208ENST00000614678 SYNE2Q8WXH0 6885 aaKnown RBP2.72□□□□□ -1.97
CPNE3-208ENST00000614678 ATP5EP56381 51 aaPredicted RBP2.71□□□□□ -1.98
CPNE3-208ENST00000614678 A6NN06 94 aa2.7□□□□□ -1.98
CPNE3-208ENST00000614678 NDUFC1O43677 76 aa2.7□□□□□ -1.98
CPNE3-208ENST00000614678 MACF1Q9UPN3 7388 aaKnown RBP2.7□□□□□ -1.98
CPNE3-208ENST00000614678 CXCL6P80162 114 aa2.7□□□□□ -1.98
CPNE3-208ENST00000614678 Q5VV11 94 aa2.69□□□□□ -1.98
CPNE3-208ENST00000614678 C7orf65Q6ZTY9 151 aa2.69□□□□□ -1.98
CPNE3-208ENST00000614678 TRAV22A0A0B4J277 110 aa2.68□□□□□ -1.98
CPNE3-208ENST00000614678 H1FX-AS1Q4G0G2 97 aa2.68□□□□□ -1.98
CPNE3-208ENST00000614678 LCA10Q71F78 164 aa2.68□□□□□ -1.98
CPNE3-208ENST00000614678 C1orf64Q8NEQ6 169 aa2.68□□□□□ -1.98
CPNE3-208ENST00000614678 KTN1-AS1Q86SY8 53 aa2.67□□□□□ -1.98
CPNE3-208ENST00000614678 KRTAP19-1Q8IUB9 90 aa2.67□□□□□ -1.98
CPNE3-208ENST00000614678 A6NED7 52 aa2.66□□□□□ -1.98
CPNE3-208ENST00000614678 CYP4F30PQ9H0H9 118 aa2.66□□□□□ -1.98
CPNE3-208ENST00000614678 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
CPNE3-208ENST00000614678 K7ERS5 55 aa2.65□□□□□ -1.99
CPNE3-208ENST00000614678 A8MUN3 132 aa2.63□□□□□ -1.99
CPNE3-208ENST00000614678 PSPHP1O15172 72 aa2.62□□□□□ -1.99
CPNE3-208ENST00000614678 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.62□□□□□ -1.99
CPNE3-208ENST00000614678 KMT2DO14686 5537 aa2.61□□□□□ -1.99
CPNE3-208ENST00000614678 LOC101927531A0A1B0GV80 90 aa2.61□□□□□ -1.99
CPNE3-208ENST00000614678 S4R3F8 94 aa2.6□□□□□ -1.99
CPNE3-208ENST00000614678 H0Y9P7 68 aa2.6□□□□□ -1.99
CPNE3-208ENST00000614678 TP53AIP1Q9HCN2 124 aa2.59□□□□□ -1.99
CPNE3-208ENST00000614678 MP68P56378 58 aa2.58□□□□□ -2
CPNE3-208ENST00000614678 LINC00208Q96KT6 92 aa2.58□□□□□ -2
CPNE3-208ENST00000614678 MT1BP07438 61 aa2.57□□□□□ -2
CPNE3-208ENST00000614678 KRTAP19-6Q3LI70 58 aa2.57□□□□□ -2
CPNE3-208ENST00000614678 KRTAP9-7A8MTY7 169 aa2.56□□□□□ -2
CPNE3-208ENST00000614678 CDC42SE1Q9NRR8 79 aa2.56□□□□□ -2
CPNE3-208ENST00000614678 MUC12Q9UKN1 5478 aa2.55□□□□□ -2
CPNE3-208ENST00000614678 CSAG1Q6PB30 78 aa2.55□□□□□ -2
CPNE3-208ENST00000614678 ADM2Q7Z4H4 148 aa2.55□□□□□ -2
CPNE3-208ENST00000614678 SPANXA2-OT1Q8N9U9 137 aa2.53□□□□□ -2
CPNE3-208ENST00000614678 SPRR2GQ9BYE4 73 aa2.52□□□□□ -2.01
CPNE3-208ENST00000614678 CAMK2N1Q7Z7J9 78 aa2.51□□□□□ -2.01
CPNE3-208ENST00000614678 SPTSSBQ8NFR3 76 aa2.51□□□□□ -2.01
CPNE3-208ENST00000614678 LINC01558Q9Y6Z2 57 aa2.51□□□□□ -2.01
CPNE3-208ENST00000614678 CHKB-CPT1BH3BT56 60 aa2.5□□□□□ -2.01
CPNE3-208ENST00000614678 P0C880 135 aa2.5□□□□□ -2.01
CPNE3-208ENST00000614678 LUZP6Q538Z0 58 aa2.5□□□□□ -2.01
CPNE3-208ENST00000614678 KRTAP19-8Q3LI54 63 aa2.49□□□□□ -2.01
CPNE3-208ENST00000614678 LINC01554Q52M75 96 aa2.49□□□□□ -2.01
CPNE3-208ENST00000614678 PRR15LQ9BU68 103 aa2.49□□□□□ -2.01
CPNE3-208ENST00000614678 MDN1Q9NU22 5596 aa2.47□□□□□ -2.01
CPNE3-208ENST00000614678 COA5Q86WW8 74 aa2.47□□□□□ -2.01
CPNE3-208ENST00000614678 DMAC1Q96GE9 116 aa2.45□□□□□ -2.02
CPNE3-208ENST00000614678 KRTAP10-5P60370 271 aa2.44□□□□□ -2.02
CPNE3-208ENST00000614678 H3BPC8 53 aa2.43□□□□□ -2.02
CPNE3-208ENST00000614678 MT1XP80297 61 aa2.42□□□□□ -2.02
CPNE3-208ENST00000614678 SPATA8Q6RVD6 105 aa2.41□□□□□ -2.02
CPNE3-208ENST00000614678 H0YAA0 97 aa2.41□□□□□ -2.02
CPNE3-208ENST00000614678 M0QZ58 72 aa2.4□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP4-8A0A0G2JLE6 195 aa2.39□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP4-8Q9BYQ9 185 aa2.39□□□□□ -2.03
CPNE3-208ENST00000614678 NEBP20929 6669 aa2.39□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP6-3Q3LI67 103 aa2.38□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP13-4Q3LI77 160 aa2.38□□□□□ -2.03
CPNE3-208ENST00000614678 R4GN34 69 aa2.38□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP19-4Q3LI73 84 aa2.38□□□□□ -2.03
CPNE3-208ENST00000614678 ROMO1P60602 79 aa2.37□□□□□ -2.03
CPNE3-208ENST00000614678 CRIPTQ9P021 101 aa2.37□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP15-1Q3LI76 137 aa2.36□□□□□ -2.03
CPNE3-208ENST00000614678 ACYP2P14621 99 aa2.36□□□□□ -2.03
CPNE3-208ENST00000614678 KRTAP10-7P60409 375 aaPredicted RBP2.35□□□□□ -2.03
CPNE3-208ENST00000614678 PLAC4Q8WY50 150 aa2.32□□□□□ -2.04
CPNE3-208ENST00000614678 KRTAP5-9P26371 169 aa2.31□□□□□ -2.04
CPNE3-208ENST00000614678 KRTAP25-1Q3LHN0 102 aa2.31□□□□□ -2.04
CPNE3-208ENST00000614678 SPRR2FQ96RM1 72 aa2.31□□□□□ -2.04
CPNE3-208ENST00000614678 DSTQ03001 7570 aaKnown RBP2.3□□□□□ -2.04
CPNE3-208ENST00000614678 A0A0D9SG42 100 aa2.28□□□□□ -2.04
CPNE3-208ENST00000614678 MIR22HGQ0VDD5 57 aa2.28□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP8-1Q8IUC2 63 aa2.27□□□□□ -2.05
CPNE3-208ENST00000614678 PRO2289Q9P1D8 64 aa2.26□□□□□ -2.05
CPNE3-208ENST00000614678 SPRR2EP22531 72 aa2.25□□□□□ -2.05
CPNE3-208ENST00000614678 SPRR2BP35325 72 aa2.25□□□□□ -2.05
CPNE3-208ENST00000614678 SPRR2AP35326 72 aa2.25□□□□□ -2.05
CPNE3-208ENST00000614678 KRTAP10-12P60413 245 aa2.24□□□□□ -2.05
CPNE3-208ENST00000614678 SPINT4Q6UDR6 99 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms