RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRAV22A0A0B4J277 110 aa4.5□□□□□ -1.69
LDLR-214ENST00000560628 LOC101927531A0A1B0GV80 90 aa4.5□□□□□ -1.69
LDLR-214ENST00000560628 NEBP20929 6669 aa4.48□□□□□ -1.69
LDLR-214ENST00000560628 HIST1H4AP62805 103 aaKnown RBP4.47□□□□□ -1.69
LDLR-214ENST00000560628 ACYP1P07311 99 aa4.46□□□□□ -1.7
LDLR-214ENST00000560628 IMUPQ9GZP8 106 aa4.46□□□□□ -1.7
LDLR-214ENST00000560628 CRIPTQ9P021 101 aa4.46□□□□□ -1.7
LDLR-214ENST00000560628 H0Y9P7 68 aa4.45□□□□□ -1.7
LDLR-214ENST00000560628 UQCRQO14949 82 aa4.45□□□□□ -1.7
LDLR-214ENST00000560628 NDUFC1O43677 76 aa4.45□□□□□ -1.7
LDLR-214ENST00000560628 SCGB1A1P11684 91 aa4.45□□□□□ -1.7
LDLR-214ENST00000560628 A0A1B0GV90 55 aa4.43□□□□□ -1.7
LDLR-214ENST00000560628 ATOX1O00244 68 aa4.42□□□□□ -1.7
LDLR-214ENST00000560628 ATP5EP2Q5VTU8 51 aa4.42□□□□□ -1.7
LDLR-214ENST00000560628 V9GYY9 64 aa4.42□□□□□ -1.7
LDLR-214ENST00000560628 FAM240AA0A1B0GVK7 77 aa4.4□□□□□ -1.71
LDLR-214ENST00000560628 ADM2Q7Z4H4 148 aa4.4□□□□□ -1.71
LDLR-214ENST00000560628 MUC12Q9UKN1 5478 aa4.4□□□□□ -1.71
LDLR-214ENST00000560628 H0YAA0 97 aa4.39□□□□□ -1.71
LDLR-214ENST00000560628 LINC00208Q96KT6 92 aa4.38□□□□□ -1.71
LDLR-214ENST00000560628 KRTAP5-9P26371 169 aa4.37□□□□□ -1.71
LDLR-214ENST00000560628 A8MUN3 132 aa4.36□□□□□ -1.71
LDLR-214ENST00000560628 LINC00643Q86TS7 51 aa4.36□□□□□ -1.71
LDLR-214ENST00000560628 KRTAP20-1Q3LI63 56 aa4.35□□□□□ -1.71
LDLR-214ENST00000560628 MP68P56378 58 aa4.32□□□□□ -1.72
LDLR-214ENST00000560628 OCR1Q9BZK8 76 aa4.31□□□□□ -1.72
LDLR-214ENST00000560628 KMT2DO14686 5537 aa4.31□□□□□ -1.72
LDLR-214ENST00000560628 PLAC4Q8WY50 150 aa4.3□□□□□ -1.72
LDLR-214ENST00000560628 P0C880 135 aa4.29□□□□□ -1.72
LDLR-214ENST00000560628 MT1XP80297 61 aa4.29□□□□□ -1.72
LDLR-214ENST00000560628 PRO2289Q9P1D8 64 aa4.29□□□□□ -1.72
LDLR-214ENST00000560628 MDN1Q9NU22 5596 aa4.27□□□□□ -1.73
LDLR-214ENST00000560628 R4GN34 69 aa4.27□□□□□ -1.73
LDLR-214ENST00000560628 SMIM20Q8N5G0 67 aa4.26□□□□□ -1.73
LDLR-214ENST00000560628 SPRR2FQ96RM1 72 aa4.26□□□□□ -1.73
LDLR-214ENST00000560628 K7ERU9 68 aa4.25□□□□□ -1.73
LDLR-214ENST00000560628 M0QZ58 72 aa4.24□□□□□ -1.73
LDLR-214ENST00000560628 A0A0A0MQY5 61 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 H3BS24 57 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 SPRR2EP22531 72 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 SPRR2BP35325 72 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 SPRR2AP35326 72 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 C20orf197Q8N268 126 aa4.23□□□□□ -1.73
LDLR-214ENST00000560628 H3BPC8 53 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 LINC01554Q52M75 96 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 KRTAP8-1Q8IUC2 63 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 DMAC1Q96GE9 116 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 KRTAP3-2Q9BYR7 98 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
LDLR-214ENST00000560628 PRO0628Q9UI54 55 aa4.21□□□□□ -1.74
LDLR-214ENST00000560628 KRTAP12-2P59991 146 aa4.18□□□□□ -1.74
LDLR-214ENST00000560628 KRTAP4-8A0A0G2JLE6 195 aa4.17□□□□□ -1.74
LDLR-214ENST00000560628 KRTAP4-8Q9BYQ9 185 aa4.17□□□□□ -1.74
LDLR-214ENST00000560628 J3QR89 54 aa4.16□□□□□ -1.74
LDLR-214ENST00000560628 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
LDLR-214ENST00000560628 TRAV7A0A075B6U4 112 aa4.13□□□□□ -1.75
LDLR-214ENST00000560628 ACYP2P14621 99 aa4.12□□□□□ -1.75
LDLR-214ENST00000560628 KRTAP10-7P60409 375 aaPredicted RBP4.11□□□□□ -1.75
LDLR-214ENST00000560628 MT-ATP8P03928 68 aa4.09□□□□□ -1.75
LDLR-214ENST00000560628 SPRR2DP22532 72 aa4.08□□□□□ -1.76
LDLR-214ENST00000560628 RPS28P62857 69 aaKnown RBP4.08□□□□□ -1.76
LDLR-214ENST00000560628 SPTSSBQ8NFR3 76 aa4.08□□□□□ -1.76
LDLR-214ENST00000560628 KRTAP2-2Q9BYT5 123 aa4.08□□□□□ -1.76
LDLR-214ENST00000560628 KRTAP2-1Q9BYU5 128 aa4.08□□□□□ -1.76
LDLR-214ENST00000560628 KRTAP10-12P60413 245 aa4.07□□□□□ -1.76
LDLR-214ENST00000560628 CHKB-CPT1BH3BT56 60 aa4.06□□□□□ -1.76
LDLR-214ENST00000560628 SNURFQ9Y675 71 aa4.02□□□□□ -1.77
LDLR-214ENST00000560628 PMAIP1Q13794 54 aa4.01□□□□□ -1.77
LDLR-214ENST00000560628 ANAPC13Q9BS18 74 aa4.01□□□□□ -1.77
LDLR-214ENST00000560628 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
LDLR-214ENST00000560628 KRTAP13-4Q3LI77 160 aa3.97□□□□□ -1.77
LDLR-214ENST00000560628 CAMK2N1Q7Z7J9 78 aa3.93□□□□□ -1.78
LDLR-214ENST00000560628 SPANXA2-OT1Q8N9U9 137 aa3.93□□□□□ -1.78
LDLR-214ENST00000560628 SERP2Q8N6R1 65 aa3.88□□□□□ -1.79
LDLR-214ENST00000560628 GPR98Q8WXG9 6306 aa3.86□□□□□ -1.79
LDLR-214ENST00000560628 A0A0D9SG42 100 aa3.86□□□□□ -1.79
LDLR-214ENST00000560628 COA5Q86WW8 74 aa3.86□□□□□ -1.79
LDLR-214ENST00000560628 KRTAP19-7Q3SYF9 63 aa3.84□□□□□ -1.79
LDLR-214ENST00000560628 CCDC179H3BU77 68 aa3.83□□□□□ -1.8
LDLR-214ENST00000560628 TMEM258P61165 79 aa3.82□□□□□ -1.8
LDLR-214ENST00000560628 SPATA8Q6RVD6 105 aa3.82□□□□□ -1.8
LDLR-214ENST00000560628 SERP1Q9Y6X1 66 aa3.82□□□□□ -1.8
LDLR-214ENST00000560628 MT1EP04732 61 aa3.81□□□□□ -1.8
LDLR-214ENST00000560628 LCE5AQ5TCM9 118 aa3.81□□□□□ -1.8
LDLR-214ENST00000560628 SPINT4Q6UDR6 99 aa3.8□□□□□ -1.8
LDLR-214ENST00000560628 PSPHP1O15172 72 aa3.79□□□□□ -1.8
LDLR-214ENST00000560628 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
LDLR-214ENST00000560628 KTN1-AS1Q86SY8 53 aa3.79□□□□□ -1.8
LDLR-214ENST00000560628 A0A1B0GU33 70 aa3.78□□□□□ -1.8
LDLR-214ENST00000560628 BRK1Q8WUW1 75 aa3.77□□□□□ -1.81
LDLR-214ENST00000560628 KRTAP4-9Q9BYQ8 210 aa3.75□□□□□ -1.81
LDLR-214ENST00000560628 SMIM26A0A096LP01 95 aa3.74□□□□□ -1.81
LDLR-214ENST00000560628 KRTAP12-1P59990 96 aa3.74□□□□□ -1.81
LDLR-214ENST00000560628 KRTAP19-5Q3LI72 72 aa3.74□□□□□ -1.81
LDLR-214ENST00000560628 DSTQ03001 7570 aaKnown RBP3.74□□□□□ -1.81
LDLR-214ENST00000560628 COX7CP15954 63 aa3.73□□□□□ -1.81
LDLR-214ENST00000560628 CYSTM1Q9H1C7 97 aa3.72□□□□□ -1.81
LDLR-214ENST00000560628 H7BZZ5 65 aa3.7□□□□□ -1.82
LDLR-214ENST00000560628 MT1GP13640 62 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms