RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SPRR2BP35325 72 aa7.88□□□□□ -1.15
TSPAN3-208ENST00000560514 SPRR2AP35326 72 aa7.88□□□□□ -1.15
TSPAN3-208ENST00000560514 KRTAP4-7Q9BYR0 210 aa7.88□□□□□ -1.15
TSPAN3-208ENST00000560514 SPRR2FQ96RM1 72 aa7.86□□□□□ -1.15
TSPAN3-208ENST00000560514 PRO0461Q9UI25 63 aa7.86□□□□□ -1.15
TSPAN3-208ENST00000560514 COL5A1-AS1Q5SY13 56 aa7.85□□□□□ -1.15
TSPAN3-208ENST00000560514 CSAG1Q6PB30 78 aa7.85□□□□□ -1.15
TSPAN3-208ENST00000560514 KRTAP3-1Q9BYR8 98 aa7.84□□□□□ -1.15
TSPAN3-208ENST00000560514 TP53AIP1Q9HCN2 124 aa7.84□□□□□ -1.15
TSPAN3-208ENST00000560514 LCE1DQ5T752 114 aa7.83□□□□□ -1.16
TSPAN3-208ENST00000560514 KRTAP2-2Q9BYT5 123 aa7.83□□□□□ -1.16
TSPAN3-208ENST00000560514 KRTAP2-1Q9BYU5 128 aa7.83□□□□□ -1.16
TSPAN3-208ENST00000560514 S4R3F8 94 aa7.82□□□□□ -1.16
TSPAN3-208ENST00000560514 C1orf64Q8NEQ6 169 aa7.81□□□□□ -1.16
TSPAN3-208ENST00000560514 K7EP34 96 aa7.8□□□□□ -1.16
TSPAN3-208ENST00000560514 KLKP1Q107X0 134 aa7.8□□□□□ -1.16
TSPAN3-208ENST00000560514 F8W1H4 67 aa7.73□□□□□ -1.17
TSPAN3-208ENST00000560514 LCA10Q71F78 164 aa7.73□□□□□ -1.17
TSPAN3-208ENST00000560514 GTF2H5Q6ZYL4 71 aa7.72□□□□□ -1.17
TSPAN3-208ENST00000560514 CYP4F30PQ9H0H9 118 aa7.68□□□□□ -1.18
TSPAN3-208ENST00000560514 CRIPTQ9P021 101 aa7.67□□□□□ -1.18
TSPAN3-208ENST00000560514 ETDBQ3ZM63 59 aa7.64□□□□□ -1.19
TSPAN3-208ENST00000560514 LCE1AQ5T7P2 110 aa7.64□□□□□ -1.19
TSPAN3-208ENST00000560514 KRTAP8-1Q8IUC2 63 aa7.64□□□□□ -1.19
TSPAN3-208ENST00000560514 KRTAP4-9Q9BYQ8 210 aa7.64□□□□□ -1.19
TSPAN3-208ENST00000560514 SPRR2DP22532 72 aa7.63□□□□□ -1.19
TSPAN3-208ENST00000560514 PRO2289Q9P1D8 64 aa7.62□□□□□ -1.19
TSPAN3-208ENST00000560514 LOC101927531A0A1B0GV80 90 aa7.6□□□□□ -1.19
TSPAN3-208ENST00000560514 TRAV22A0A0B4J277 110 aa7.58□□□□□ -1.2
TSPAN3-208ENST00000560514 ACYP1P07311 99 aa7.58□□□□□ -1.2
TSPAN3-208ENST00000560514 KRTAP4-2Q9BYR5 136 aa7.56□□□□□ -1.2
TSPAN3-208ENST00000560514 UQCRQO14949 82 aa7.52□□□□□ -1.21
TSPAN3-208ENST00000560514 ATP5EP2Q5VTU8 51 aa7.51□□□□□ -1.21
TSPAN3-208ENST00000560514 FAM240AA0A1B0GVK7 77 aa7.5□□□□□ -1.21
TSPAN3-208ENST00000560514 ATOX1O00244 68 aa7.5□□□□□ -1.21
TSPAN3-208ENST00000560514 A0A087WVE0 104 aa7.48□□□□□ -1.21
TSPAN3-208ENST00000560514 H0YAA0 97 aa7.48□□□□□ -1.21
TSPAN3-208ENST00000560514 NDUFC1O43677 76 aa7.48□□□□□ -1.21
TSPAN3-208ENST00000560514 GPR98Q8WXG9 6306 aa7.46□□□□□ -1.21
TSPAN3-208ENST00000560514 A8MUN3 132 aa7.44□□□□□ -1.22
TSPAN3-208ENST00000560514 MT1XP80297 61 aa7.44□□□□□ -1.22
TSPAN3-208ENST00000560514 HIST1H4AP62805 103 aaKnown RBP7.43□□□□□ -1.22
TSPAN3-208ENST00000560514 PCP4L1A6NKN8 68 aa7.42□□□□□ -1.22
TSPAN3-208ENST00000560514 H0Y9P7 68 aa7.42□□□□□ -1.22
TSPAN3-208ENST00000560514 PLAC4Q8WY50 150 aa7.42□□□□□ -1.22
TSPAN3-208ENST00000560514 KRTAP12-2P59991 146 aa7.4□□□□□ -1.22
TSPAN3-208ENST00000560514 LINC00643Q86TS7 51 aa7.36□□□□□ -1.23
TSPAN3-208ENST00000560514 KRTAP4-11Q9BYQ6 195 aa7.33□□□□□ -1.24
TSPAN3-208ENST00000560514 LCE4AQ5TA78 99 aa7.32□□□□□ -1.24
TSPAN3-208ENST00000560514 ADM2Q7Z4H4 148 aa7.31□□□□□ -1.24
TSPAN3-208ENST00000560514 LINC00208Q96KT6 92 aa7.31□□□□□ -1.24
TSPAN3-208ENST00000560514 MP68P56378 58 aa7.28□□□□□ -1.24
TSPAN3-208ENST00000560514 OCR1Q9BZK8 76 aa7.26□□□□□ -1.25
TSPAN3-208ENST00000560514 DSTQ03001 7570 aaKnown RBP7.23□□□□□ -1.25
TSPAN3-208ENST00000560514 H3BPC8 53 aa7.21□□□□□ -1.26
TSPAN3-208ENST00000560514 C20orf197Q8N268 126 aa7.2□□□□□ -1.26
TSPAN3-208ENST00000560514 R4GN34 69 aa7.17□□□□□ -1.26
TSPAN3-208ENST00000560514 DMAC1Q96GE9 116 aa7.12□□□□□ -1.27
TSPAN3-208ENST00000560514 P0C880 135 aa7.11□□□□□ -1.27
TSPAN3-208ENST00000560514 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
TSPAN3-208ENST00000560514 J3QR89 54 aa7.07□□□□□ -1.28
TSPAN3-208ENST00000560514 M0QZ58 72 aa7.07□□□□□ -1.28
TSPAN3-208ENST00000560514 KRTAP10-12P60413 245 aa7.07□□□□□ -1.28
TSPAN3-208ENST00000560514 SCGB1A1P11684 91 aa7.06□□□□□ -1.28
TSPAN3-208ENST00000560514 LINC01554Q52M75 96 aa7.03□□□□□ -1.28
TSPAN3-208ENST00000560514 A0A1B0GV90 55 aa7.02□□□□□ -1.29
TSPAN3-208ENST00000560514 LCE5AQ5TCM9 118 aa7.02□□□□□ -1.29
TSPAN3-208ENST00000560514 TRAV7A0A075B6U4 112 aa7.01□□□□□ -1.29
TSPAN3-208ENST00000560514 ACYP2P14621 99 aa6.97□□□□□ -1.29
TSPAN3-208ENST00000560514 SPTSSBQ8NFR3 76 aa6.93□□□□□ -1.3
TSPAN3-208ENST00000560514 KRTAP5-3Q6L8H2 238 aa6.92□□□□□ -1.3
TSPAN3-208ENST00000560514 SMIM20Q8N5G0 67 aa6.89□□□□□ -1.31
TSPAN3-208ENST00000560514 KRTAP19-4Q3LI73 84 aa6.85□□□□□ -1.31
TSPAN3-208ENST00000560514 MT-ATP8P03928 68 aa6.82□□□□□ -1.32
TSPAN3-208ENST00000560514 CHKB-CPT1BH3BT56 60 aa6.78□□□□□ -1.32
TSPAN3-208ENST00000560514 KRTAP19-3Q7Z4W3 81 aa6.73□□□□□ -1.33
TSPAN3-208ENST00000560514 MT4P47944 62 aa6.72□□□□□ -1.33
TSPAN3-208ENST00000560514 K7ERU9 68 aa6.7□□□□□ -1.34
TSPAN3-208ENST00000560514 SPANXA2-OT1Q8N9U9 137 aa6.69□□□□□ -1.34
TSPAN3-208ENST00000560514 HMCN1Q96RW7 5635 aa6.69□□□□□ -1.34
TSPAN3-208ENST00000560514 CYSTM1Q9H1C7 97 aa6.67□□□□□ -1.34
TSPAN3-208ENST00000560514 MT1EP04732 61 aa6.65□□□□□ -1.34
TSPAN3-208ENST00000560514 KRTAP19-7Q3SYF9 63 aa6.65□□□□□ -1.34
TSPAN3-208ENST00000560514 AHNAK2Q8IVF2 5795 aa6.64□□□□□ -1.35
TSPAN3-208ENST00000560514 SNURFQ9Y675 71 aa6.64□□□□□ -1.35
TSPAN3-208ENST00000560514 KRTAP5-10Q6L8G5 202 aa6.62□□□□□ -1.35
TSPAN3-208ENST00000560514 KRTAP13-4Q3LI77 160 aa6.56□□□□□ -1.36
TSPAN3-208ENST00000560514 CAMK2N1Q7Z7J9 78 aa6.55□□□□□ -1.36
TSPAN3-208ENST00000560514 SERP2Q8N6R1 65 aa6.54□□□□□ -1.36
TSPAN3-208ENST00000560514 MT1GP13640 62 aa6.53□□□□□ -1.36
TSPAN3-208ENST00000560514 PP632Q6XCG6 107 aa6.53□□□□□ -1.36
TSPAN3-208ENST00000560514 SEC61GP60059 68 aa6.46□□□□□ -1.38
TSPAN3-208ENST00000560514 KRTAP5-7Q6L8G8 165 aa6.46□□□□□ -1.38
TSPAN3-208ENST00000560514 COA5Q86WW8 74 aa6.44□□□□□ -1.38
TSPAN3-208ENST00000560514 SERP1Q9Y6X1 66 aa6.44□□□□□ -1.38
TSPAN3-208ENST00000560514 KRTAP5-4Q6L8H1 288 aa6.39□□□□□ -1.39
TSPAN3-208ENST00000560514 KRTAP19-5Q3LI72 72 aa6.37□□□□□ -1.39
TSPAN3-208ENST00000560514 MT1MQ8N339 61 aa6.37□□□□□ -1.39
TSPAN3-208ENST00000560514 A0A0D9SG42 100 aa6.34□□□□□ -1.39
TSPAN3-208ENST00000560514 A0A1B0GU33 70 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms