RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 KRTAP19-4Q3LI73 84 aa4.35□□□□□ -1.71
YBX3-218ENST00000546298 TP53AIP1Q9HCN2 124 aa4.35□□□□□ -1.71
YBX3-218ENST00000546298 MT-ATP8P03928 68 aa4.33□□□□□ -1.72
YBX3-218ENST00000546298 C5orf47Q569G3 176 aa4.33□□□□□ -1.72
YBX3-218ENST00000546298 CSAG1Q6PB30 78 aa4.33□□□□□ -1.72
YBX3-218ENST00000546298 FAM236AA0A1B0GUQ0 79 aa4.32□□□□□ -1.72
YBX3-218ENST00000546298 FAM236BA0A1B0GV22 79 aa4.32□□□□□ -1.72
YBX3-218ENST00000546298 C1orf64Q8NEQ6 169 aa4.32□□□□□ -1.72
YBX3-218ENST00000546298 S4R3F8 94 aa4.32□□□□□ -1.72
YBX3-218ENST00000546298 ANAPC13Q9BS18 74 aa4.31□□□□□ -1.72
YBX3-218ENST00000546298 KRTAP3-1Q9BYR8 98 aa4.3□□□□□ -1.72
YBX3-218ENST00000546298 FAM240AA0A1B0GVK7 77 aa4.28□□□□□ -1.72
YBX3-218ENST00000546298 LCA10Q71F78 164 aa4.26□□□□□ -1.73
YBX3-218ENST00000546298 ACYP1P07311 99 aa4.25□□□□□ -1.73
YBX3-218ENST00000546298 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
YBX3-218ENST00000546298 CYP4F30PQ9H0H9 118 aa4.24□□□□□ -1.73
YBX3-218ENST00000546298 LOC101927531A0A1B0GV80 90 aa4.23□□□□□ -1.73
YBX3-218ENST00000546298 Q5VV11 94 aa4.23□□□□□ -1.73
YBX3-218ENST00000546298 IMUPQ9GZP8 106 aa4.23□□□□□ -1.73
YBX3-218ENST00000546298 TRAV22A0A0B4J277 110 aa4.22□□□□□ -1.73
YBX3-218ENST00000546298 A6NN06 94 aa4.22□□□□□ -1.73
YBX3-218ENST00000546298 KLKP1Q107X0 134 aa4.22□□□□□ -1.73
YBX3-218ENST00000546298 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
YBX3-218ENST00000546298 KRTAP19-8Q3LI54 63 aa4.21□□□□□ -1.74
YBX3-218ENST00000546298 MACF1Q9UPN3 7388 aaKnown RBP4.2□□□□□ -1.74
YBX3-218ENST00000546298 CCDC179H3BU77 68 aa4.2□□□□□ -1.74
YBX3-218ENST00000546298 MT1BP07438 61 aa4.2□□□□□ -1.74
YBX3-218ENST00000546298 ATP5EP2Q5VTU8 51 aa4.2□□□□□ -1.74
YBX3-218ENST00000546298 LINC00643Q86TS7 51 aa4.2□□□□□ -1.74
YBX3-218ENST00000546298 CRIPTQ9P021 101 aa4.19□□□□□ -1.74
YBX3-218ENST00000546298 ATOX1O00244 68 aa4.18□□□□□ -1.74
YBX3-218ENST00000546298 UQCRQO14949 82 aa4.18□□□□□ -1.74
YBX3-218ENST00000546298 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
YBX3-218ENST00000546298 HIST1H4AP62805 103 aaKnown RBP4.17□□□□□ -1.74
YBX3-218ENST00000546298 NDUFC1O43677 76 aa4.15□□□□□ -1.75
YBX3-218ENST00000546298 H0Y9P7 68 aa4.14□□□□□ -1.75
YBX3-218ENST00000546298 SMIM20Q8N5G0 67 aa4.14□□□□□ -1.75
YBX3-218ENST00000546298 A0A087WVE0 104 aa4.13□□□□□ -1.75
YBX3-218ENST00000546298 KRTAP10-5P60370 271 aa4.13□□□□□ -1.75
YBX3-218ENST00000546298 A8MUN3 132 aa4.12□□□□□ -1.75
YBX3-218ENST00000546298 H0YAA0 97 aa4.11□□□□□ -1.75
YBX3-218ENST00000546298 COX7CP15954 63 aa4.11□□□□□ -1.75
YBX3-218ENST00000546298 RPS28P62857 69 aaKnown RBP4.09□□□□□ -1.75
YBX3-218ENST00000546298 MP68P56378 58 aa4.08□□□□□ -1.76
YBX3-218ENST00000546298 LINC00208Q96KT6 92 aa4.08□□□□□ -1.76
YBX3-218ENST00000546298 TMEM258P61165 79 aa4.07□□□□□ -1.76
YBX3-218ENST00000546298 SERP2Q8N6R1 65 aa4.07□□□□□ -1.76
YBX3-218ENST00000546298 ADM2Q7Z4H4 148 aa4.05□□□□□ -1.76
YBX3-218ENST00000546298 OCR1Q9BZK8 76 aa4.03□□□□□ -1.76
YBX3-218ENST00000546298 H3BPC8 53 aa4.01□□□□□ -1.77
YBX3-218ENST00000546298 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
YBX3-218ENST00000546298 C20orf197Q8N268 126 aa4.01□□□□□ -1.77
YBX3-218ENST00000546298 PRO2289Q9P1D8 64 aa4.01□□□□□ -1.77
YBX3-218ENST00000546298 PLAC4Q8WY50 150 aa4□□□□□ -1.77
YBX3-218ENST00000546298 NEBP20929 6669 aa3.99□□□□□ -1.77
YBX3-218ENST00000546298 R4GN34 69 aa3.98□□□□□ -1.77
YBX3-218ENST00000546298 TRAV7A0A075B6U4 112 aa3.97□□□□□ -1.77
YBX3-218ENST00000546298 KRTAP20-1Q3LI63 56 aa3.96□□□□□ -1.78
YBX3-218ENST00000546298 KRTAP23-1A1A580 65 aa3.95□□□□□ -1.78
YBX3-218ENST00000546298 DMAC1Q96GE9 116 aa3.95□□□□□ -1.78
YBX3-218ENST00000546298 CYSTM1Q9H1C7 97 aa3.95□□□□□ -1.78
YBX3-218ENST00000546298 SERP1Q9Y6X1 66 aa3.95□□□□□ -1.78
YBX3-218ENST00000546298 ATP5EP56381 51 aaPredicted RBP3.94□□□□□ -1.78
YBX3-218ENST00000546298 M0QZ58 72 aa3.93□□□□□ -1.78
YBX3-218ENST00000546298 P0C880 135 aa3.92□□□□□ -1.78
YBX3-218ENST00000546298 MT1XP80297 61 aa3.92□□□□□ -1.78
YBX3-218ENST00000546298 SMIM26A0A096LP01 95 aa3.9□□□□□ -1.79
YBX3-218ENST00000546298 H7BZZ5 65 aa3.9□□□□□ -1.79
YBX3-218ENST00000546298 ACYP2P14621 99 aa3.88□□□□□ -1.79
YBX3-218ENST00000546298 SPRR2FQ96RM1 72 aa3.88□□□□□ -1.79
YBX3-218ENST00000546298 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
YBX3-218ENST00000546298 LINC01554Q52M75 96 aa3.87□□□□□ -1.79
YBX3-218ENST00000546298 KRTAP8-1Q8IUC2 63 aa3.87□□□□□ -1.79
YBX3-218ENST00000546298 SPTSSBQ8NFR3 76 aa3.87□□□□□ -1.79
YBX3-218ENST00000546298 KRTAP2-3P0C7H8 128 aa3.85□□□□□ -1.79
YBX3-218ENST00000546298 KRTAP2-4Q9BYR9 128 aa3.85□□□□□ -1.79
YBX3-218ENST00000546298 PRO0628Q9UI54 55 aa3.85□□□□□ -1.79
YBX3-218ENST00000546298 KMT2DO14686 5537 aa3.85□□□□□ -1.79
YBX3-218ENST00000546298 MUC12Q9UKN1 5478 aa3.84□□□□□ -1.79
YBX3-218ENST00000546298 SPRR2EP22531 72 aa3.84□□□□□ -1.79
YBX3-218ENST00000546298 SPRR2BP35325 72 aa3.84□□□□□ -1.79
YBX3-218ENST00000546298 SPRR2AP35326 72 aa3.84□□□□□ -1.79
YBX3-218ENST00000546298 SNURFQ9Y675 71 aa3.84□□□□□ -1.79
YBX3-218ENST00000546298 CHKB-CPT1BH3BT56 60 aa3.81□□□□□ -1.8
YBX3-218ENST00000546298 LCE1AQ5T7P2 110 aa3.77□□□□□ -1.81
YBX3-218ENST00000546298 MDN1Q9NU22 5596 aa3.74□□□□□ -1.81
YBX3-218ENST00000546298 KRTAP10-12P60413 245 aa3.74□□□□□ -1.81
YBX3-218ENST00000546298 KRTAP10-7P60409 375 aaPredicted RBP3.73□□□□□ -1.81
YBX3-218ENST00000546298 BRK1Q8WUW1 75 aa3.73□□□□□ -1.81
YBX3-218ENST00000546298 SPRR2DP22532 72 aa3.72□□□□□ -1.81
YBX3-218ENST00000546298 Q1T7F1 81 aa3.72□□□□□ -1.81
YBX3-218ENST00000546298 SPANXA2-OT1Q8N9U9 137 aa3.72□□□□□ -1.81
YBX3-218ENST00000546298 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
YBX3-218ENST00000546298 KRTAP2-1Q9BYU5 128 aa3.72□□□□□ -1.81
YBX3-218ENST00000546298 V9GYY9 64 aa3.71□□□□□ -1.82
YBX3-218ENST00000546298 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.7□□□□□ -1.82
YBX3-218ENST00000546298 A0A0A0MQY5 61 aa3.66□□□□□ -1.82
YBX3-218ENST00000546298 CAMK2N1Q7Z7J9 78 aa3.66□□□□□ -1.82
YBX3-218ENST00000546298 SEC61GP60059 68 aa3.62□□□□□ -1.83
YBX3-218ENST00000546298 KRTAP13-4Q3LI77 160 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms