RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SPRR4Q96PI1 79 aa4.58□□□□□ -1.68
LIMCH1-219ENST00000514096 SPATA8Q6RVD6 105 aa4.56□□□□□ -1.68
LIMCH1-219ENST00000514096 IGLV6-57P01721 117 aa4.56□□□□□ -1.68
LIMCH1-219ENST00000514096 KRTAP10-8P60410 259 aa4.55□□□□□ -1.68
LIMCH1-219ENST00000514096 PKHD1L1Q86WI1 4243 aa4.55□□□□□ -1.68
LIMCH1-219ENST00000514096 IGLV5-37A0A075B6J1 123 aa4.54□□□□□ -1.68
LIMCH1-219ENST00000514096 HMCN2Q8NDA2 5059 aa4.52□□□□□ -1.69
LIMCH1-219ENST00000514096 DMAC1Q96GE9 116 aa4.51□□□□□ -1.69
LIMCH1-219ENST00000514096 KRTAP13-1Q8IUC0 172 aa4.51□□□□□ -1.69
LIMCH1-219ENST00000514096 KRTAP4-16G5E9R7 235 aaPredicted RBP4.49□□□□□ -1.69
LIMCH1-219ENST00000514096 SPRR1AP35321 89 aa4.47□□□□□ -1.69
LIMCH1-219ENST00000514096 A0A1B0GW54 56 aa4.47□□□□□ -1.69
LIMCH1-219ENST00000514096 IGLV5-48A0A075B6I7 105 aa4.46□□□□□ -1.7
LIMCH1-219ENST00000514096 IGFL1Q6UW32 110 aa4.45□□□□□ -1.7
LIMCH1-219ENST00000514096 TNXBP22105 4242 aa4.45□□□□□ -1.7
LIMCH1-219ENST00000514096 LINC00472Q9H8W2 130 aa4.43□□□□□ -1.7
LIMCH1-219ENST00000514096 TP53AIP1Q9HCN2 124 aa4.43□□□□□ -1.7
LIMCH1-219ENST00000514096 FSIP2Q5CZC0 6907 aa4.42□□□□□ -1.7
LIMCH1-219ENST00000514096 FAT4Q6V0I7 4981 aa4.41□□□□□ -1.7
LIMCH1-219ENST00000514096 IGKV2D-30A0A075B6S6 120 aa4.41□□□□□ -1.7
LIMCH1-219ENST00000514096 IGKV2-30P06310 120 aa4.41□□□□□ -1.7
LIMCH1-219ENST00000514096 C10orf95Q9H7T3 257 aa4.4□□□□□ -1.71
LIMCH1-219ENST00000514096 Q5W150 140 aa4.38□□□□□ -1.71
LIMCH1-219ENST00000514096 Q96NJ1 140 aa4.38□□□□□ -1.71
LIMCH1-219ENST00000514096 MMP24-AS1A0A0U1RRL7 71 aa4.37□□□□□ -1.71
LIMCH1-219ENST00000514096 A0A0D9SG42 100 aa4.36□□□□□ -1.71
LIMCH1-219ENST00000514096 MRPL34Q9BQ48 92 aaKnown RBP4.34□□□□□ -1.71
LIMCH1-219ENST00000514096 COX6B2Q6YFQ2 88 aa4.33□□□□□ -1.72
LIMCH1-219ENST00000514096 A0A1B0GU33 70 aa4.31□□□□□ -1.72
LIMCH1-219ENST00000514096 M0R2T5 61 aa4.3□□□□□ -1.72
LIMCH1-219ENST00000514096 XP32Q5T750 250 aa4.28□□□□□ -1.72
LIMCH1-219ENST00000514096 SPRR1BP22528 89 aa4.28□□□□□ -1.72
LIMCH1-219ENST00000514096 KRTAP13-3Q3SY46 172 aa4.28□□□□□ -1.72
LIMCH1-219ENST00000514096 TPRXLQ17RH7 258 aa4.25□□□□□ -1.73
LIMCH1-219ENST00000514096 A0A1B0GVX0 72 aa4.25□□□□□ -1.73
LIMCH1-219ENST00000514096 KRTAP4-1Q9BYQ7 146 aa4.23□□□□□ -1.73
LIMCH1-219ENST00000514096 H0YAA0 97 aa4.22□□□□□ -1.73
LIMCH1-219ENST00000514096 KRTAP15-1Q3LI76 137 aa4.22□□□□□ -1.73
LIMCH1-219ENST00000514096 KRTAP23-1A1A580 65 aa4.2□□□□□ -1.74
LIMCH1-219ENST00000514096 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
LIMCH1-219ENST00000514096 LCE2DQ5TA82 110 aaPredicted RBP4.19□□□□□ -1.74
LIMCH1-219ENST00000514096 H1FX-AS1Q4G0G2 97 aa4.14□□□□□ -1.75
LIMCH1-219ENST00000514096 RPL37P61927 97 aaKnown RBP4.13□□□□□ -1.75
LIMCH1-219ENST00000514096 RPS29P62273 56 aaKnown RBP4.12□□□□□ -1.75
LIMCH1-219ENST00000514096 KRTAP3-3Q9BYR6 98 aa4.1□□□□□ -1.75
LIMCH1-219ENST00000514096 KRTAP3-2Q9BYR7 98 aa4.1□□□□□ -1.75
LIMCH1-219ENST00000514096 PLAC4Q8WY50 150 aa4.03□□□□□ -1.76
LIMCH1-219ENST00000514096 R4GN34 69 aa4.02□□□□□ -1.77
LIMCH1-219ENST00000514096 MUC17Q685J3 4493 aa3.99□□□□□ -1.77
LIMCH1-219ENST00000514096 USH2AO75445 5202 aa3.99□□□□□ -1.77
LIMCH1-219ENST00000514096 MT1HP80294 61 aa3.97□□□□□ -1.77
LIMCH1-219ENST00000514096 KRTAP9-2Q9BYQ4 174 aa3.96□□□□□ -1.78
LIMCH1-219ENST00000514096 LCE2CQ5TA81 110 aa3.94□□□□□ -1.78
LIMCH1-219ENST00000514096 LCE2AQ5TA79 106 aaPredicted RBP3.93□□□□□ -1.78
LIMCH1-219ENST00000514096 KRTAP10-10P60014 251 aa3.92□□□□□ -1.78
LIMCH1-219ENST00000514096 KRTAP19-2Q3LHN2 52 aa3.89□□□□□ -1.79
LIMCH1-219ENST00000514096 S4R3F8 94 aa3.88□□□□□ -1.79
LIMCH1-219ENST00000514096 KRTAP10-6P60371 365 aaPredicted RBP3.87□□□□□ -1.79
LIMCH1-219ENST00000514096 PRO2289Q9P1D8 64 aa3.82□□□□□ -1.8
LIMCH1-219ENST00000514096 LORP23490 312 aaPredicted RBP3.79□□□□□ -1.8
LIMCH1-219ENST00000514096 FLGP20930 4061 aaPredicted RBP3.78□□□□□ -1.8
LIMCH1-219ENST00000514096 KRTAP12-2P59991 146 aa3.77□□□□□ -1.81
LIMCH1-219ENST00000514096 KRTAP13-4Q3LI77 160 aa3.77□□□□□ -1.81
LIMCH1-219ENST00000514096 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
LIMCH1-219ENST00000514096 MT1FP04733 61 aa3.75□□□□□ -1.81
LIMCH1-219ENST00000514096 LCE2BO14633 110 aa3.74□□□□□ -1.81
LIMCH1-219ENST00000514096 MT2AP02795 61 aa3.74□□□□□ -1.81
LIMCH1-219ENST00000514096 CRCT1Q9UGL9 99 aa3.74□□□□□ -1.81
LIMCH1-219ENST00000514096 KRTAP9-8Q9BYQ0 159 aa3.71□□□□□ -1.82
LIMCH1-219ENST00000514096 KRTAP3-1Q9BYR8 98 aa3.71□□□□□ -1.82
LIMCH1-219ENST00000514096 SSPOA2VEC9 5147 aa3.7□□□□□ -1.82
LIMCH1-219ENST00000514096 SYNE2Q8WXH0 6885 aaKnown RBP3.67□□□□□ -1.82
LIMCH1-219ENST00000514096 KRTAP12-1P59990 96 aa3.61□□□□□ -1.83
LIMCH1-219ENST00000514096 MACF1Q9UPN3 7388 aaKnown RBP3.6□□□□□ -1.83
LIMCH1-219ENST00000514096 FCGBPQ9Y6R7 5405 aaPredicted RBP3.59□□□□□ -1.83
LIMCH1-219ENST00000514096 M0QZ58 72 aa3.59□□□□□ -1.84
LIMCH1-219ENST00000514096 KRTAP9-3Q9BYQ3 159 aa3.57□□□□□ -1.84
LIMCH1-219ENST00000514096 KRTAP19-1Q8IUB9 90 aa3.57□□□□□ -1.84
LIMCH1-219ENST00000514096 PP632Q6XCG6 107 aa3.54□□□□□ -1.84
LIMCH1-219ENST00000514096 INE1O15225 51 aa3.53□□□□□ -1.84
LIMCH1-219ENST00000514096 KMT2DO14686 5537 aa3.52□□□□□ -1.85
LIMCH1-219ENST00000514096 KRTAP9-7A8MTY7 169 aa3.44□□□□□ -1.86
LIMCH1-219ENST00000514096 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.44□□□□□ -1.86
LIMCH1-219ENST00000514096 MT1BP07438 61 aa3.39□□□□□ -1.87
LIMCH1-219ENST00000514096 MUC12Q9UKN1 5478 aa3.37□□□□□ -1.87
LIMCH1-219ENST00000514096 DSTQ03001 7570 aaKnown RBP3.33□□□□□ -1.88
LIMCH1-219ENST00000514096 SPRR2GQ9BYE4 73 aa3.33□□□□□ -1.88
LIMCH1-219ENST00000514096 KRTAP19-6Q3LI70 58 aa3.31□□□□□ -1.88
LIMCH1-219ENST00000514096 TNP1P09430 55 aa3.31□□□□□ -1.88
LIMCH1-219ENST00000514096 MDN1Q9NU22 5596 aa3.29□□□□□ -1.88
LIMCH1-219ENST00000514096 KRTAP4-8A0A0G2JLE6 195 aa3.27□□□□□ -1.89
LIMCH1-219ENST00000514096 KRTAP4-8Q9BYQ9 185 aa3.27□□□□□ -1.89
LIMCH1-219ENST00000514096 SPRR2FQ96RM1 72 aa3.26□□□□□ -1.89
LIMCH1-219ENST00000514096 KRTAP19-8Q3LI54 63 aa3.25□□□□□ -1.89
LIMCH1-219ENST00000514096 KRTAP10-5P60370 271 aa3.23□□□□□ -1.89
LIMCH1-219ENST00000514096 MT1XP80297 61 aa3.21□□□□□ -1.9
LIMCH1-219ENST00000514096 KRTAP8-1Q8IUC2 63 aa3.21□□□□□ -1.9
LIMCH1-219ENST00000514096 KRTAP10-7P60409 375 aaPredicted RBP3.19□□□□□ -1.9
LIMCH1-219ENST00000514096 SPRR2EP22531 72 aa3.13□□□□□ -1.91
LIMCH1-219ENST00000514096 SPRR2BP35325 72 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms