RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PRR4Q16378 134 aa4.68□□□□□ -1.66
SCN1A-207ENST00000507401 PRLHP81277 87 aa4.67□□□□□ -1.66
SCN1A-207ENST00000507401 MOBPQ13875 183 aa4.67□□□□□ -1.66
SCN1A-207ENST00000507401 KRTAP13-2Q52LG2 175 aa4.67□□□□□ -1.66
SCN1A-207ENST00000507401 ANAPC11Q9NYG5 84 aa4.67□□□□□ -1.66
SCN1A-207ENST00000507401 SPRR1BP22528 89 aa4.65□□□□□ -1.67
SCN1A-207ENST00000507401 IGFL1Q6UW32 110 aa4.64□□□□□ -1.67
SCN1A-207ENST00000507401 WFDC13Q8IUB5 93 aa4.64□□□□□ -1.67
SCN1A-207ENST00000507401 LINC00304Q8N9R0 145 aa4.64□□□□□ -1.67
SCN1A-207ENST00000507401 ZNF706Q9Y5V0 76 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-207ENST00000507401 C8orf87E5RJ46 101 aa4.63□□□□□ -1.67
SCN1A-207ENST00000507401 SPAG11AQ6PDA7 123 aa4.63□□□□□ -1.67
SCN1A-207ENST00000507401 A0A087WSZ3 146 aa4.62□□□□□ -1.67
SCN1A-207ENST00000507401 LINC00472Q9H8W2 130 aa4.62□□□□□ -1.67
SCN1A-207ENST00000507401 MUC2Q02817 5179 aa4.6□□□□□ -1.67
SCN1A-207ENST00000507401 LINC01554Q52M75 96 aa4.59□□□□□ -1.67
SCN1A-207ENST00000507401 LINC00483Q53H64 154 aa4.59□□□□□ -1.67
SCN1A-207ENST00000507401 MMP24-AS1A0A0U1RRL7 71 aa4.58□□□□□ -1.68
SCN1A-207ENST00000507401 TPRXLQ17RH7 258 aa4.58□□□□□ -1.68
SCN1A-207ENST00000507401 SPINK1P00995 79 aa4.57□□□□□ -1.68
SCN1A-207ENST00000507401 ACYP2P14621 99 aa4.57□□□□□ -1.68
SCN1A-207ENST00000507401 SSBP3-AS1Q7Z2R9 100 aa4.57□□□□□ -1.68
SCN1A-207ENST00000507401 RETNLBQ9BQ08 111 aa4.57□□□□□ -1.68
SCN1A-207ENST00000507401 A8MU10 97 aa4.56□□□□□ -1.68
SCN1A-207ENST00000507401 LINC00313P59037 77 aa4.55□□□□□ -1.68
SCN1A-207ENST00000507401 RPS29P62273 56 aaKnown RBP4.55□□□□□ -1.68
SCN1A-207ENST00000507401 HRES1P13985 223 aa4.54□□□□□ -1.68
SCN1A-207ENST00000507401 SPATA8Q6RVD6 105 aa4.54□□□□□ -1.68
SCN1A-207ENST00000507401 SPINK7P58062 85 aa4.52□□□□□ -1.69
SCN1A-207ENST00000507401 C8orf17Q9NRJ1 99 aa4.52□□□□□ -1.69
SCN1A-207ENST00000507401 MUC17Q685J3 4493 aa4.51□□□□□ -1.69
SCN1A-207ENST00000507401 IGLV9-49A0A0B4J1Y8 123 aa4.51□□□□□ -1.69
SCN1A-207ENST00000507401 UQCR11O14957 56 aa4.51□□□□□ -1.69
SCN1A-207ENST00000507401 MRPL34Q9BQ48 92 aaKnown RBP4.51□□□□□ -1.69
SCN1A-207ENST00000507401 A0A1B0GVX0 72 aa4.5□□□□□ -1.69
SCN1A-207ENST00000507401 DEFB116Q30KQ4 102 aa4.5□□□□□ -1.69
SCN1A-207ENST00000507401 KRTAP13-3Q3SY46 172 aa4.5□□□□□ -1.69
SCN1A-207ENST00000507401 LCE1AQ5T7P2 110 aa4.5□□□□□ -1.69
SCN1A-207ENST00000507401 A0A1B0GU69 56 aa4.48□□□□□ -1.69
SCN1A-207ENST00000507401 PCOTHQ58A44 107 aa4.48□□□□□ -1.69
SCN1A-207ENST00000507401 DMAC1Q96GE9 116 aa4.48□□□□□ -1.69
SCN1A-207ENST00000507401 FAT4Q6V0I7 4981 aa4.46□□□□□ -1.7
SCN1A-207ENST00000507401 IGHV6-1A0A0B4J1U7 121 aa4.45□□□□□ -1.7
SCN1A-207ENST00000507401 SEC61BP60468 96 aaKnown RBP4.45□□□□□ -1.7
SCN1A-207ENST00000507401 MIR22HGQ0VDD5 57 aa4.45□□□□□ -1.7
SCN1A-207ENST00000507401 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-207ENST00000507401 Q96NJ1 140 aa4.44□□□□□ -1.7
SCN1A-207ENST00000507401 PRAC1Q96KF2 57 aa4.37□□□□□ -1.71
SCN1A-207ENST00000507401 NOTCH2NLQ7Z3S9 236 aa4.36□□□□□ -1.71
SCN1A-207ENST00000507401 KRTAP4-1Q9BYQ7 146 aa4.36□□□□□ -1.71
SCN1A-207ENST00000507401 A0A0G2JQZ4 141 aa4.35□□□□□ -1.71
SCN1A-207ENST00000507401 C9orf92A6NGG3 77 aa4.32□□□□□ -1.72
SCN1A-207ENST00000507401 IGKV2-30P06310 120 aa4.32□□□□□ -1.72
SCN1A-207ENST00000507401 CSAG1Q6PB30 78 aa4.32□□□□□ -1.72
SCN1A-207ENST00000507401 Q5W150 140 aa4.3□□□□□ -1.72
SCN1A-207ENST00000507401 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
SCN1A-207ENST00000507401 ADM2Q7Z4H4 148 aa4.29□□□□□ -1.72
SCN1A-207ENST00000507401 IGKV2D-30A0A075B6S6 120 aa4.28□□□□□ -1.72
SCN1A-207ENST00000507401 K7ERS5 55 aa4.28□□□□□ -1.72
SCN1A-207ENST00000507401 RPL37P61927 97 aaKnown RBP4.28□□□□□ -1.72
SCN1A-207ENST00000507401 ROMO1P60602 79 aa4.27□□□□□ -1.73
SCN1A-207ENST00000507401 KRTAP19-2Q3LHN2 52 aa4.27□□□□□ -1.73
SCN1A-207ENST00000507401 A8MUU9 505 aa4.24□□□□□ -1.73
SCN1A-207ENST00000507401 MT1HP80294 61 aa4.22□□□□□ -1.73
SCN1A-207ENST00000507401 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
SCN1A-207ENST00000507401 COX6B2Q6YFQ2 88 aa4.17□□□□□ -1.74
SCN1A-207ENST00000507401 C20orf166-AS1Q96NR2 134 aa4.17□□□□□ -1.74
SCN1A-207ENST00000507401 A0A1B0GU33 70 aa4.15□□□□□ -1.75
SCN1A-207ENST00000507401 KRTAP10-6P60371 365 aaPredicted RBP4.15□□□□□ -1.75
SCN1A-207ENST00000507401 KRTAP16-1A8MUX0 517 aa4.14□□□□□ -1.75
SCN1A-207ENST00000507401 M0R2T5 61 aa4.14□□□□□ -1.75
SCN1A-207ENST00000507401 KRTAP5-11Q6L8G4 156 aa4.14□□□□□ -1.75
SCN1A-207ENST00000507401 FSIP2Q5CZC0 6907 aa4.14□□□□□ -1.75
SCN1A-207ENST00000507401 FLGP20930 4061 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-207ENST00000507401 H1FX-AS1Q4G0G2 97 aa4.12□□□□□ -1.75
SCN1A-207ENST00000507401 CRCT1Q9UGL9 99 aa4.12□□□□□ -1.75
SCN1A-207ENST00000507401 H0YAA0 97 aa4.11□□□□□ -1.75
SCN1A-207ENST00000507401 KRTAP10-7P60409 375 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-207ENST00000507401 SPINT4Q6UDR6 99 aa4□□□□□ -1.77
SCN1A-207ENST00000507401 P0C880 135 aa3.99□□□□□ -1.77
SCN1A-207ENST00000507401 CRIPTQ9P021 101 aa3.97□□□□□ -1.77
SCN1A-207ENST00000507401 MT2AP02795 61 aa3.93□□□□□ -1.78
SCN1A-207ENST00000507401 USH2AO75445 5202 aa3.92□□□□□ -1.78
SCN1A-207ENST00000507401 SSPOA2VEC9 5147 aa3.89□□□□□ -1.79
SCN1A-207ENST00000507401 MT1FP04733 61 aa3.89□□□□□ -1.79
SCN1A-207ENST00000507401 KRTAP10-10P60014 251 aa3.89□□□□□ -1.79
SCN1A-207ENST00000507401 NDUFAF8A1L188 74 aa3.88□□□□□ -1.79
SCN1A-207ENST00000507401 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
SCN1A-207ENST00000507401 KRTAP5-9P26371 169 aa3.84□□□□□ -1.79
SCN1A-207ENST00000507401 A0A0A0MQY5 61 aa3.81□□□□□ -1.8
SCN1A-207ENST00000507401 KRTAP5-1Q6L8H4 278 aa3.81□□□□□ -1.8
SCN1A-207ENST00000507401 M0QZ58 72 aa3.8□□□□□ -1.8
SCN1A-207ENST00000507401 MT3P25713 68 aa3.8□□□□□ -1.8
SCN1A-207ENST00000507401 S4R3F8 94 aa3.8□□□□□ -1.8
SCN1A-207ENST00000507401 FCGBPQ9Y6R7 5405 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-207ENST00000507401 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
SCN1A-207ENST00000507401 KRTAP19-6Q3LI70 58 aa3.75□□□□□ -1.81
SCN1A-207ENST00000507401 KRTAP5-4Q6L8H1 288 aa3.75□□□□□ -1.81
SCN1A-207ENST00000507401 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
SCN1A-207ENST00000507401 A0A0D9SG42 100 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms