RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 KRTAP16-1A8MUX0 517 aa3.93□□□□□ -1.78
NUP54-204ENST00000506098 Q8N9L7 120 aa3.93□□□□□ -1.78
NUP54-204ENST00000506098 H0Y9P7 68 aa3.91□□□□□ -1.78
NUP54-204ENST00000506098 XP32Q5T750 250 aa3.91□□□□□ -1.78
NUP54-204ENST00000506098 PRAC1Q96KF2 57 aa3.91□□□□□ -1.78
NUP54-204ENST00000506098 LOC100996750A0A140TA64 210 aa3.9□□□□□ -1.79
NUP54-204ENST00000506098 A8MUU9 505 aa3.9□□□□□ -1.79
NUP54-204ENST00000506098 C20orf166-AS1Q96NR2 134 aa3.9□□□□□ -1.79
NUP54-204ENST00000506098 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.79
NUP54-204ENST00000506098 LRP2P98164 4655 aa3.89□□□□□ -1.79
NUP54-204ENST00000506098 MRPL34Q9BQ48 92 aaKnown RBP3.89□□□□□ -1.79
NUP54-204ENST00000506098 HMCN2Q8NDA2 5059 aa3.88□□□□□ -1.79
NUP54-204ENST00000506098 SPATA8Q6RVD6 105 aa3.88□□□□□ -1.79
NUP54-204ENST00000506098 COA5Q86WW8 74 aa3.88□□□□□ -1.79
NUP54-204ENST00000506098 RPL37P61927 97 aaKnown RBP3.87□□□□□ -1.79
NUP54-204ENST00000506098 WFDC13Q8IUB5 93 aa3.87□□□□□ -1.79
NUP54-204ENST00000506098 MUC17Q685J3 4493 aa3.87□□□□□ -1.79
NUP54-204ENST00000506098 SPINK7P58062 85 aa3.85□□□□□ -1.79
NUP54-204ENST00000506098 MIR22HGQ0VDD5 57 aa3.85□□□□□ -1.79
NUP54-204ENST00000506098 CSAG1Q6PB30 78 aa3.84□□□□□ -1.79
NUP54-204ENST00000506098 TP53AIP1Q9HCN2 124 aa3.83□□□□□ -1.8
NUP54-204ENST00000506098 K7ERS5 55 aa3.82□□□□□ -1.8
NUP54-204ENST00000506098 UQCR11O14957 56 aa3.82□□□□□ -1.8
NUP54-204ENST00000506098 ADM2Q7Z4H4 148 aa3.81□□□□□ -1.8
NUP54-204ENST00000506098 KRTAP25-1Q3LHN0 102 aa3.8□□□□□ -1.8
NUP54-204ENST00000506098 PCOTHQ58A44 107 aa3.8□□□□□ -1.8
NUP54-204ENST00000506098 DMAC1Q96GE9 116 aa3.8□□□□□ -1.8
NUP54-204ENST00000506098 Q5W150 140 aa3.79□□□□□ -1.8
NUP54-204ENST00000506098 KRTAP4-1Q9BYQ7 146 aa3.76□□□□□ -1.81
NUP54-204ENST00000506098 IGKV2-30P06310 120 aa3.73□□□□□ -1.81
NUP54-204ENST00000506098 P0C880 135 aa3.73□□□□□ -1.81
NUP54-204ENST00000506098 LUZP6Q538Z0 58 aa3.72□□□□□ -1.81
NUP54-204ENST00000506098 UBR4Q5T4S7 5183 aa3.71□□□□□ -1.82
NUP54-204ENST00000506098 IGKV2D-30A0A075B6S6 120 aa3.7□□□□□ -1.82
NUP54-204ENST00000506098 HRES1P13985 223 aa3.7□□□□□ -1.82
NUP54-204ENST00000506098 A0A1B0GU69 56 aa3.68□□□□□ -1.82
NUP54-204ENST00000506098 KRTAP4-8Q9BYQ9 185 aa3.68□□□□□ -1.82
NUP54-204ENST00000506098 RNF213Q63HN8 5207 aa3.68□□□□□ -1.82
NUP54-204ENST00000506098 MUC2Q02817 5179 aa3.67□□□□□ -1.82
NUP54-204ENST00000506098 KRTAP19-2Q3LHN2 52 aa3.67□□□□□ -1.82
NUP54-204ENST00000506098 KRTAP19-4Q3LI73 84 aa3.67□□□□□ -1.82
NUP54-204ENST00000506098 CAMK2N1Q7Z7J9 78 aa3.67□□□□□ -1.82
NUP54-204ENST00000506098 ACYP2P14621 99 aa3.66□□□□□ -1.82
NUP54-204ENST00000506098 FLGP20930 4061 aaPredicted RBP3.63□□□□□ -1.83
NUP54-204ENST00000506098 COX6B2Q6YFQ2 88 aa3.62□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP19-1Q8IUB9 90 aa3.62□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP4-12Q9BQ66 201 aa3.62□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP23-1A1A580 65 aa3.61□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP3-1Q9BYR8 98 aa3.6□□□□□ -1.83
NUP54-204ENST00000506098 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP9-2Q9BYQ4 174 aa3.59□□□□□ -1.83
NUP54-204ENST00000506098 KRTAP15-1Q3LI76 137 aa3.58□□□□□ -1.84
NUP54-204ENST00000506098 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.57□□□□□ -1.84
NUP54-204ENST00000506098 H1FX-AS1Q4G0G2 97 aa3.57□□□□□ -1.84
NUP54-204ENST00000506098 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
NUP54-204ENST00000506098 FAT4Q6V0I7 4981 aa3.55□□□□□ -1.84
NUP54-204ENST00000506098 MT1HP80294 61 aa3.54□□□□□ -1.84
NUP54-204ENST00000506098 SPINT4Q6UDR6 99 aa3.53□□□□□ -1.84
NUP54-204ENST00000506098 LCE3BQ5TA77 95 aa3.5□□□□□ -1.85
NUP54-204ENST00000506098 S4R3F8 94 aa3.5□□□□□ -1.85
NUP54-204ENST00000506098 M0R2T5 61 aa3.45□□□□□ -1.86
NUP54-204ENST00000506098 A0A1B0GU33 70 aa3.44□□□□□ -1.86
NUP54-204ENST00000506098 KRTAP10-6P60371 365 aaPredicted RBP3.44□□□□□ -1.86
NUP54-204ENST00000506098 LCE4AQ5TA78 99 aa3.41□□□□□ -1.86
NUP54-204ENST00000506098 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
NUP54-204ENST00000506098 KRTAP9-8Q9BYQ0 159 aa3.41□□□□□ -1.86
NUP54-204ENST00000506098 KRTAP9-4Q9BYQ2 154 aa3.41□□□□□ -1.86
NUP54-204ENST00000506098 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.87
NUP54-204ENST00000506098 H0YAA0 97 aa3.4□□□□□ -1.87
NUP54-204ENST00000506098 MT2AP02795 61 aa3.37□□□□□ -1.87
NUP54-204ENST00000506098 MT1FP04733 61 aa3.34□□□□□ -1.87
NUP54-204ENST00000506098 KRTAP4-8A0A0G2JLE6 195 aa3.32□□□□□ -1.88
NUP54-204ENST00000506098 PRO2289Q9P1D8 64 aa3.32□□□□□ -1.88
NUP54-204ENST00000506098 KRTAP10-10P60014 251 aa3.31□□□□□ -1.88
NUP54-204ENST00000506098 CRIPTQ9P021 101 aa3.31□□□□□ -1.88
NUP54-204ENST00000506098 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
NUP54-204ENST00000506098 KRTAP9-3Q9BYQ3 159 aa3.29□□□□□ -1.88
NUP54-204ENST00000506098 PLAC4Q8WY50 150 aa3.25□□□□□ -1.89
NUP54-204ENST00000506098 SPRR2GQ9BYE4 73 aa3.25□□□□□ -1.89
NUP54-204ENST00000506098 M0QZ58 72 aa3.22□□□□□ -1.89
NUP54-204ENST00000506098 R4GN34 69 aa3.22□□□□□ -1.89
NUP54-204ENST00000506098 LCE5AQ5TCM9 118 aa3.21□□□□□ -1.9
NUP54-204ENST00000506098 INE1O15225 51 aa3.2□□□□□ -1.9
NUP54-204ENST00000506098 KRTAP19-8Q3LI54 63 aa3.2□□□□□ -1.9
NUP54-204ENST00000506098 KRTAP4-7Q9BYR0 210 aa3.19□□□□□ -1.9
NUP54-204ENST00000506098 KRTAP13-4Q3LI77 160 aa3.18□□□□□ -1.9
NUP54-204ENST00000506098 KRTAP4-9Q9BYQ8 210 aa3.17□□□□□ -1.9
NUP54-204ENST00000506098 MT1BP07438 61 aa3.15□□□□□ -1.91
NUP54-204ENST00000506098 USH2AO75445 5202 aa3.11□□□□□ -1.91
NUP54-204ENST00000506098 KRTAP4-11Q9BYQ6 195 aa3.09□□□□□ -1.91
NUP54-204ENST00000506098 A0A0D9SG42 100 aa3.07□□□□□ -1.92
NUP54-204ENST00000506098 KRTAP19-6Q3LI70 58 aa3.07□□□□□ -1.92
NUP54-204ENST00000506098 KRTAP12-1P59990 96 aa3.06□□□□□ -1.92
NUP54-204ENST00000506098 C10orf95Q9H7T3 257 aa3.06□□□□□ -1.92
NUP54-204ENST00000506098 KRTAP12-2P59991 146 aa3.05□□□□□ -1.92
NUP54-204ENST00000506098 CRCT1Q9UGL9 99 aa3.05□□□□□ -1.92
NUP54-204ENST00000506098 SSPOA2VEC9 5147 aa3.04□□□□□ -1.92
NUP54-204ENST00000506098 PP632Q6XCG6 107 aa3.04□□□□□ -1.92
NUP54-204ENST00000506098 KRTAP4-2Q9BYR5 136 aa3.04□□□□□ -1.92
NUP54-204ENST00000506098 KRTAP10-5P60370 271 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms