RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	TRAV22	A0A0B4J277	110 aa		5.24	□□□□□ -1.57
NR1I3-222	ENST00000506018	MP68	P56378	58 aa		5.24	□□□□□ -1.57
NR1I3-222	ENST00000506018	OCR1	Q9BZK8	76 aa		5.24	□□□□□ -1.57
NR1I3-222	ENST00000506018	HRES1	P13985	223 aa		5.23	□□□□□ -1.57
NR1I3-222	ENST00000506018	PCP4	P48539	62 aa		5.23	□□□□□ -1.57
NR1I3-222	ENST00000506018		H3BPC8	53 aa		5.21	□□□□□ -1.58
NR1I3-222	ENST00000506018	SERP2	Q8N6R1	65 aa		5.21	□□□□□ -1.58
NR1I3-222	ENST00000506018	MPLKIP	Q8TAP9	179 aa		5.21	□□□□□ -1.58
NR1I3-222	ENST00000506018		H0Y9P7	68 aa		5.2	□□□□□ -1.58
NR1I3-222	ENST00000506018	KRTAP9-8	Q9BYQ0	159 aa		5.2	□□□□□ -1.58
NR1I3-222	ENST00000506018	LOC101927531	A0A1B0GV80	90 aa		5.18	□□□□□ -1.58
NR1I3-222	ENST00000506018	SPINK7	P58062	85 aa		5.18	□□□□□ -1.58
NR1I3-222	ENST00000506018		Q5W150	140 aa		5.17	□□□□□ -1.58
NR1I3-222	ENST00000506018	C7orf65	Q6ZTY9	151 aa		5.16	□□□□□ -1.58
NR1I3-222	ENST00000506018	COX7C	P15954	63 aa		5.16	□□□□□ -1.58
NR1I3-222	ENST00000506018	LINC00208	Q96KT6	92 aa		5.16	□□□□□ -1.58
NR1I3-222	ENST00000506018	IGKV2D-30	A0A075B6S6	120 aa		5.15	□□□□□ -1.59
NR1I3-222	ENST00000506018	IGKV2-30	P06310	120 aa		5.15	□□□□□ -1.59
NR1I3-222	ENST00000506018	C1orf64	Q8NEQ6	169 aa		5.15	□□□□□ -1.59
NR1I3-222	ENST00000506018	MT2A	P02795	61 aa		5.13	□□□□□ -1.59
NR1I3-222	ENST00000506018	KRTAP10-10	P60014	251 aa		5.13	□□□□□ -1.59
NR1I3-222	ENST00000506018	CYP4F30P	Q9H0H9	118 aa		5.11	□□□□□ -1.59
NR1I3-222	ENST00000506018	KRTAP15-1	Q3LI76	137 aa		5.1	□□□□□ -1.59
NR1I3-222	ENST00000506018	C20orf197	Q8N268	126 aa		5.1	□□□□□ -1.59
NR1I3-222	ENST00000506018	NDUFC1	O43677	76 aa		5.08	□□□□□ -1.6
NR1I3-222	ENST00000506018	MT1F	P04733	61 aa		5.08	□□□□□ -1.6
NR1I3-222	ENST00000506018	KLKP1	Q107X0	134 aa		5.08	□□□□□ -1.6
NR1I3-222	ENST00000506018	CCDC179	H3BU77	68 aa		5.06	□□□□□ -1.6
NR1I3-222	ENST00000506018	SNURF	Q9Y675	71 aa		5.06	□□□□□ -1.6
NR1I3-222	ENST00000506018	H1FX-AS1	Q4G0G2	97 aa		5.03	□□□□□ -1.6
NR1I3-222	ENST00000506018	USH2A	O75445	5202 aa		5.01	□□□□□ -1.61
NR1I3-222	ENST00000506018	C4orf26	Q17RF5	130 aa		5	□□□□□ -1.61
NR1I3-222	ENST00000506018		A8MUN3	132 aa		4.99	□□□□□ -1.61
NR1I3-222	ENST00000506018	SPANXA2-OT1	Q8N9U9	137 aa		4.99	□□□□□ -1.61
NR1I3-222	ENST00000506018	SSPO	A2VEC9	5147 aa		4.98	□□□□□ -1.61
NR1I3-222	ENST00000506018	TMEM258	P61165	79 aa		4.96	□□□□□ -1.62
NR1I3-222	ENST00000506018		H7BZZ5	65 aa		4.95	□□□□□ -1.62
NR1I3-222	ENST00000506018	ATP5E	P56381	51 aa	Predicted RBP	4.93	□□□□□ -1.62
NR1I3-222	ENST00000506018	ACYP2	P14621	99 aa		4.92	□□□□□ -1.62
NR1I3-222	ENST00000506018	DMAC1	Q96GE9	116 aa		4.91	□□□□□ -1.62
NR1I3-222	ENST00000506018	CYSTM1	Q9H1C7	97 aa		4.91	□□□□□ -1.62
NR1I3-222	ENST00000506018	SVIP	Q8NHG7	77 aa		4.9	□□□□□ -1.63
NR1I3-222	ENST00000506018	KRTAP19-6	Q3LI70	58 aa		4.89	□□□□□ -1.63
NR1I3-222	ENST00000506018	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.89	□□□□□ -1.63
NR1I3-222	ENST00000506018		S4R3F8	94 aa		4.86	□□□□□ -1.63
NR1I3-222	ENST00000506018	CHKB-CPT1B	H3BT56	60 aa		4.85	□□□□□ -1.63
NR1I3-222	ENST00000506018	SPTSSB	Q8NFR3	76 aa		4.84	□□□□□ -1.63
NR1I3-222	ENST00000506018	CSAG1	Q6PB30	78 aa		4.83	□□□□□ -1.64
NR1I3-222	ENST00000506018	LCA10	Q71F78	164 aa		4.79	□□□□□ -1.64
NR1I3-222	ENST00000506018	COA5	Q86WW8	74 aa		4.79	□□□□□ -1.64
NR1I3-222	ENST00000506018	SERP1	Q9Y6X1	66 aa		4.79	□□□□□ -1.64
NR1I3-222	ENST00000506018	MACF1	Q9UPN3	7388 aa	Known RBP	4.78	□□□□□ -1.64
NR1I3-222	ENST00000506018	RPS28	P62857	69 aa	Known RBP	4.73	□□□□□ -1.65
NR1I3-222	ENST00000506018		Q5VV11	94 aa		4.73	□□□□□ -1.65
NR1I3-222	ENST00000506018	SYNE2	Q8WXH0	6885 aa	Known RBP	4.72	□□□□□ -1.65
NR1I3-222	ENST00000506018		A6NN06	94 aa		4.7	□□□□□ -1.66
NR1I3-222	ENST00000506018	KRTAP6-3	Q3LI67	103 aa		4.69	□□□□□ -1.66
NR1I3-222	ENST00000506018	SPRR2G	Q9BYE4	73 aa		4.69	□□□□□ -1.66
NR1I3-222	ENST00000506018	CRIPT	Q9P021	101 aa		4.68	□□□□□ -1.66
NR1I3-222	ENST00000506018	SEC61G	P60059	68 aa		4.67	□□□□□ -1.66
NR1I3-222	ENST00000506018	SMIM26	A0A096LP01	95 aa		4.66	□□□□□ -1.66
NR1I3-222	ENST00000506018	KRTAP19-8	Q3LI54	63 aa		4.66	□□□□□ -1.66
NR1I3-222	ENST00000506018		H0YAA0	97 aa		4.65	□□□□□ -1.66
NR1I3-222	ENST00000506018	MT1B	P07438	61 aa		4.65	□□□□□ -1.67
NR1I3-222	ENST00000506018		V9GYY9	64 aa		4.63	□□□□□ -1.67
NR1I3-222	ENST00000506018	PRR15L	Q9BU68	103 aa		4.61	□□□□□ -1.67
NR1I3-222	ENST00000506018	ADM2	Q7Z4H4	148 aa		4.6	□□□□□ -1.67
NR1I3-222	ENST00000506018		A0A1B0GU69	56 aa		4.59	□□□□□ -1.67
NR1I3-222	ENST00000506018	KRTAP10-5	P60370	271 aa		4.59	□□□□□ -1.67
NR1I3-222	ENST00000506018	LINC01558	Q9Y6Z2	57 aa		4.57	□□□□□ -1.68
NR1I3-222	ENST00000506018		Q1T7F1	81 aa		4.55	□□□□□ -1.68
NR1I3-222	ENST00000506018	KRTAP5-3	Q6L8H2	238 aa		4.51	□□□□□ -1.69
NR1I3-222	ENST00000506018		P0C880	135 aa		4.5	□□□□□ -1.69
NR1I3-222	ENST00000506018	PRO2289	Q9P1D8	64 aa		4.5	□□□□□ -1.69
NR1I3-222	ENST00000506018		R4GN34	69 aa		4.5	□□□□□ -1.69
NR1I3-222	ENST00000506018		A0A1B0GU33	70 aa		4.49	□□□□□ -1.69
NR1I3-222	ENST00000506018		M0QZ58	72 aa		4.49	□□□□□ -1.69
NR1I3-222	ENST00000506018	PSPHP1	O15172	72 aa		4.47	□□□□□ -1.69
NR1I3-222	ENST00000506018	PLAC4	Q8WY50	150 aa		4.47	□□□□□ -1.69
NR1I3-222	ENST00000506018	KRTAP5-9	P26371	169 aa		4.44	□□□□□ -1.7
NR1I3-222	ENST00000506018	UQCR11	O14957	56 aa		4.43	□□□□□ -1.7
NR1I3-222	ENST00000506018		A0A0A0MQY5	61 aa		4.42	□□□□□ -1.7
NR1I3-222	ENST00000506018	NEB	P20929	6669 aa		4.42	□□□□□ -1.7
NR1I3-222	ENST00000506018	MUC12	Q9UKN1	5478 aa		4.41	□□□□□ -1.7
NR1I3-222	ENST00000506018		A6NED7	52 aa		4.39	□□□□□ -1.71
NR1I3-222	ENST00000506018	KRTAP20-1	Q3LI63	56 aa		4.39	□□□□□ -1.71
NR1I3-222	ENST00000506018	LCE1A	Q5T7P2	110 aa		4.38	□□□□□ -1.71
NR1I3-222	ENST00000506018	LINC01554	Q52M75	96 aa		4.36	□□□□□ -1.71
NR1I3-222	ENST00000506018	MT1X	P80297	61 aa		4.35	□□□□□ -1.71
NR1I3-222	ENST00000506018	MIR22HG	Q0VDD5	57 aa		4.35	□□□□□ -1.71
NR1I3-222	ENST00000506018	SPATA8	Q6RVD6	105 aa		4.35	□□□□□ -1.71
NR1I3-222	ENST00000506018	BRK1	Q8WUW1	75 aa		4.33	□□□□□ -1.72
NR1I3-222	ENST00000506018	KRTAP13-4	Q3LI77	160 aa		4.32	□□□□□ -1.72
NR1I3-222	ENST00000506018	SPRR2F	Q96RM1	72 aa		4.32	□□□□□ -1.72
NR1I3-222	ENST00000506018	KRTAP8-1	Q8IUC2	63 aa		4.31	□□□□□ -1.72
NR1I3-222	ENST00000506018	KMT2D	O14686	5537 aa		4.31	□□□□□ -1.72
NR1I3-222	ENST00000506018	KRTAP12-2	P59991	146 aa		4.3	□□□□□ -1.72
NR1I3-222	ENST00000506018		A0A0D9SG42	100 aa		4.29	□□□□□ -1.72
NR1I3-222	ENST00000506018	CDC42SE1	Q9NRR8	79 aa		4.28	□□□□□ -1.72
NR1I3-222	ENST00000506018		K7ERS5	55 aa		4.27	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms