RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 K7EQZ3 153 aa3.33□□□□□ -1.88
VIM-207ENST00000495528 COX6B2Q6YFQ2 88 aa3.33□□□□□ -1.88
VIM-207ENST00000495528 SSPOA2VEC9 5147 aa3.33□□□□□ -1.88
VIM-207ENST00000495528 SCGB1A1P11684 91 aa3.32□□□□□ -1.88
VIM-207ENST00000495528 HIST1H4AP62805 103 aaKnown RBP3.32□□□□□ -1.88
VIM-207ENST00000495528 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
VIM-207ENST00000495528 C8orf17Q9NRJ1 99 aa3.32□□□□□ -1.88
VIM-207ENST00000495528 C8orf87E5RJ46 101 aa3.31□□□□□ -1.88
VIM-207ENST00000495528 RPL37P61927 97 aaKnown RBP3.31□□□□□ -1.88
VIM-207ENST00000495528 WFDC13Q8IUB5 93 aa3.31□□□□□ -1.88
VIM-207ENST00000495528 MT-ATP8P03928 68 aa3.3□□□□□ -1.88
VIM-207ENST00000495528 ATP5EP2Q5VTU8 51 aa3.3□□□□□ -1.88
VIM-207ENST00000495528 CAMK2N1Q7Z7J9 78 aa3.3□□□□□ -1.88
VIM-207ENST00000495528 MMP24-AS1A0A0U1RRL7 71 aa3.29□□□□□ -1.88
VIM-207ENST00000495528 hDV103S1A0JD37 113 aa3.29□□□□□ -1.88
VIM-207ENST00000495528 CASC2Q6XLA1 102 aa3.29□□□□□ -1.88
VIM-207ENST00000495528 A0A087WVE0 104 aa3.28□□□□□ -1.88
VIM-207ENST00000495528 HCG22E2RYF7 251 aa3.28□□□□□ -1.88
VIM-207ENST00000495528 NDUFS5O43920 106 aa3.27□□□□□ -1.89
VIM-207ENST00000495528 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
VIM-207ENST00000495528 TMEM254Q8TBM7 123 aa3.27□□□□□ -1.89
VIM-207ENST00000495528 MRPL34Q9BQ48 92 aaKnown RBP3.27□□□□□ -1.89
VIM-207ENST00000495528 A8MUU9 505 aa3.26□□□□□ -1.89
VIM-207ENST00000495528 FCGBPQ9Y6R7 5405 aaPredicted RBP3.26□□□□□ -1.89
VIM-207ENST00000495528 C20orf166-AS1Q96NR2 134 aa3.25□□□□□ -1.89
VIM-207ENST00000495528 IMUPQ9GZP8 106 aa3.25□□□□□ -1.89
VIM-207ENST00000495528 ATP11AUNQ6ZP68 121 aa3.24□□□□□ -1.89
VIM-207ENST00000495528 Q5W150 140 aa3.22□□□□□ -1.89
VIM-207ENST00000495528 ZCCHC13Q8WW36 166 aaKnown RBP3.21□□□□□ -1.9
VIM-207ENST00000495528 FAM236AA0A1B0GUQ0 79 aa3.2□□□□□ -1.9
VIM-207ENST00000495528 FAM236BA0A1B0GV22 79 aa3.2□□□□□ -1.9
VIM-207ENST00000495528 KRTAP5-5Q701N2 237 aaPredicted RBP3.2□□□□□ -1.9
VIM-207ENST00000495528 TP53AIP1Q9HCN2 124 aa3.2□□□□□ -1.9
VIM-207ENST00000495528 SYNE2Q8WXH0 6885 aaKnown RBP3.19□□□□□ -1.9
VIM-207ENST00000495528 UQCRQO14949 82 aa3.18□□□□□ -1.9
VIM-207ENST00000495528 MT2AP02795 61 aa3.18□□□□□ -1.9
VIM-207ENST00000495528 PP632Q6XCG6 107 aa3.17□□□□□ -1.9
VIM-207ENST00000495528 H0Y9P7 68 aa3.16□□□□□ -1.9
VIM-207ENST00000495528 MT1FP04733 61 aa3.16□□□□□ -1.9
VIM-207ENST00000495528 SPINK7P58062 85 aa3.16□□□□□ -1.9
VIM-207ENST00000495528 TRAV7A0A075B6U4 112 aa3.15□□□□□ -1.91
VIM-207ENST00000495528 ATOX1O00244 68 aa3.15□□□□□ -1.91
VIM-207ENST00000495528 SEC61GP60059 68 aa3.15□□□□□ -1.91
VIM-207ENST00000495528 C5orf47Q569G3 176 aa3.15□□□□□ -1.91
VIM-207ENST00000495528 SMIM20Q8N5G0 67 aa3.15□□□□□ -1.91
VIM-207ENST00000495528 TRAV22A0A0B4J277 110 aa3.14□□□□□ -1.91
VIM-207ENST00000495528 MP68P56378 58 aa3.14□□□□□ -1.91
VIM-207ENST00000495528 LINC00208Q96KT6 92 aa3.14□□□□□ -1.91
VIM-207ENST00000495528 KRTAP10-10P60014 251 aa3.13□□□□□ -1.91
VIM-207ENST00000495528 C1orf64Q8NEQ6 169 aa3.13□□□□□ -1.91
VIM-207ENST00000495528 MACF1Q9UPN3 7388 aaKnown RBP3.12□□□□□ -1.91
VIM-207ENST00000495528 SERP2Q8N6R1 65 aa3.12□□□□□ -1.91
VIM-207ENST00000495528 CYP4F30PQ9H0H9 118 aa3.12□□□□□ -1.91
VIM-207ENST00000495528 LOC101927531A0A1B0GV80 90 aa3.11□□□□□ -1.91
VIM-207ENST00000495528 C7orf65Q6ZTY9 151 aa3.11□□□□□ -1.91
VIM-207ENST00000495528 ANAPC13Q9BS18 74 aa3.11□□□□□ -1.91
VIM-207ENST00000495528 FAM236DA0A1B0GTK5 79 aa3.1□□□□□ -1.91
VIM-207ENST00000495528 FAM236CP0DP71 79 aa3.1□□□□□ -1.91
VIM-207ENST00000495528 HRES1P13985 223 aa3.1□□□□□ -1.91
VIM-207ENST00000495528 SPRR5A0A1B0GTR4 108 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 H3BPC8 53 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 COX7CP15954 63 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 KLKP1Q107X0 134 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 C4orf26Q17RF5 130 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 KRTAP19-6Q3LI70 58 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 SNURFQ9Y675 71 aa3.09□□□□□ -1.91
VIM-207ENST00000495528 C20orf197Q8N268 126 aa3.08□□□□□ -1.92
VIM-207ENST00000495528 RBM12B-AS1Q9P1G2 102 aa3.08□□□□□ -1.92
VIM-207ENST00000495528 KRTAP6-3Q3LI67 103 aa3.06□□□□□ -1.92
VIM-207ENST00000495528 CCDC179H3BU77 68 aa3.05□□□□□ -1.92
VIM-207ENST00000495528 H1FX-AS1Q4G0G2 97 aa3.02□□□□□ -1.93
VIM-207ENST00000495528 RPS28P62857 69 aaKnown RBP3.01□□□□□ -1.93
VIM-207ENST00000495528 CYSTM1Q9H1C7 97 aa3.01□□□□□ -1.93
VIM-207ENST00000495528 NEBP20929 6669 aa3□□□□□ -1.93
VIM-207ENST00000495528 NDUFC1O43677 76 aa2.99□□□□□ -1.93
VIM-207ENST00000495528 LCE1CQ5T751 118 aa2.99□□□□□ -1.93
VIM-207ENST00000495528 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
VIM-207ENST00000495528 MUC12Q9UKN1 5478 aa2.99□□□□□ -1.93
VIM-207ENST00000495528 H7BZZ5 65 aa2.98□□□□□ -1.93
VIM-207ENST00000495528 ACYP2P14621 99 aa2.97□□□□□ -1.93
VIM-207ENST00000495528 SPANXA2-OT1Q8N9U9 137 aa2.97□□□□□ -1.93
VIM-207ENST00000495528 A8MUN3 132 aa2.96□□□□□ -1.94
VIM-207ENST00000495528 DMAC1Q96GE9 116 aa2.96□□□□□ -1.94
VIM-207ENST00000495528 S4R3F8 94 aa2.96□□□□□ -1.94
VIM-207ENST00000495528 LCA10Q71F78 164 aa2.95□□□□□ -1.94
VIM-207ENST00000495528 TMEM258P61165 79 aa2.94□□□□□ -1.94
VIM-207ENST00000495528 CSAG1Q6PB30 78 aa2.93□□□□□ -1.94
VIM-207ENST00000495528 PRO0628Q9UI54 55 aa2.93□□□□□ -1.94
VIM-207ENST00000495528 V9GYY9 64 aa2.92□□□□□ -1.94
VIM-207ENST00000495528 CHKB-CPT1BH3BT56 60 aa2.91□□□□□ -1.94
VIM-207ENST00000495528 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
VIM-207ENST00000495528 COA5Q86WW8 74 aa2.9□□□□□ -1.95
VIM-207ENST00000495528 A6NN06 94 aa2.88□□□□□ -1.95
VIM-207ENST00000495528 ATP5EP56381 51 aaPredicted RBP2.88□□□□□ -1.95
VIM-207ENST00000495528 SPTSSBQ8NFR3 76 aa2.87□□□□□ -1.95
VIM-207ENST00000495528 MDN1Q9NU22 5596 aa2.86□□□□□ -1.95
VIM-207ENST00000495528 MT1BP07438 61 aa2.86□□□□□ -1.95
VIM-207ENST00000495528 KMT2DO14686 5537 aa2.86□□□□□ -1.95
VIM-207ENST00000495528 SMIM26A0A096LP01 95 aa2.84□□□□□ -1.95
VIM-207ENST00000495528 SERP1Q9Y6X1 66 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms