RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MRPL34Q9BQ48 92 aaKnown RBP6.1□□□□□ -1.43
VPS52-213ENST00000461743 LOC101927531A0A1B0GV80 90 aa6.09□□□□□ -1.43
VPS52-213ENST00000461743 NDUFS5O43920 106 aa6.09□□□□□ -1.43
VPS52-213ENST00000461743 CHKB-CPT1BH3BT56 60 aa6.08□□□□□ -1.44
VPS52-213ENST00000461743 WFDC13Q8IUB5 93 aa6.08□□□□□ -1.44
VPS52-213ENST00000461743 PRR15LQ9BU68 103 aa6.08□□□□□ -1.44
VPS52-213ENST00000461743 CASC2Q6XLA1 102 aa6.07□□□□□ -1.44
VPS52-213ENST00000461743 COA5Q86WW8 74 aa6.04□□□□□ -1.44
VPS52-213ENST00000461743 RBM12B-AS1Q9P1G2 102 aa6.04□□□□□ -1.44
VPS52-213ENST00000461743 HRES1P13985 223 aa6.03□□□□□ -1.44
VPS52-213ENST00000461743 CDC42SE1Q9NRR8 79 aa6.03□□□□□ -1.44
VPS52-213ENST00000461743 A6NN06 94 aa6.02□□□□□ -1.45
VPS52-213ENST00000461743 LINC01558Q9Y6Z2 57 aa6.01□□□□□ -1.45
VPS52-213ENST00000461743 A6NED7 52 aa6□□□□□ -1.45
VPS52-213ENST00000461743 M0R2T5 61 aa6□□□□□ -1.45
VPS52-213ENST00000461743 SPINK7P58062 85 aa6□□□□□ -1.45
VPS52-213ENST00000461743 A8MU10 97 aa5.99□□□□□ -1.45
VPS52-213ENST00000461743 LCA10Q71F78 164 aa5.99□□□□□ -1.45
VPS52-213ENST00000461743 TP53AIP1Q9HCN2 124 aa5.99□□□□□ -1.45
VPS52-213ENST00000461743 C7orf65Q6ZTY9 151 aa5.98□□□□□ -1.45
VPS52-213ENST00000461743 LORP23490 312 aaPredicted RBP5.97□□□□□ -1.45
VPS52-213ENST00000461743 KRTAP10-6P60371 365 aaPredicted RBP5.97□□□□□ -1.45
VPS52-213ENST00000461743 SPTSSBQ8NFR3 76 aa5.97□□□□□ -1.45
VPS52-213ENST00000461743 KRTAP9-2Q9BYQ4 174 aa5.96□□□□□ -1.46
VPS52-213ENST00000461743 Q5W150 140 aa5.9□□□□□ -1.46
VPS52-213ENST00000461743 IGKV2D-30A0A075B6S6 120 aa5.88□□□□□ -1.47
VPS52-213ENST00000461743 IGKV2-30P06310 120 aa5.88□□□□□ -1.47
VPS52-213ENST00000461743 H1FX-AS1Q4G0G2 97 aa5.8□□□□□ -1.48
VPS52-213ENST00000461743 KRTAP9-8Q9BYQ0 159 aa5.79□□□□□ -1.48
VPS52-213ENST00000461743 ACYP2P14621 99 aa5.76□□□□□ -1.49
VPS52-213ENST00000461743 MT2AP02795 61 aa5.74□□□□□ -1.49
VPS52-213ENST00000461743 DMAC1Q96GE9 116 aa5.73□□□□□ -1.49
VPS52-213ENST00000461743 KRTAP9-6A0A140TA67 174 aa5.71□□□□□ -1.5
VPS52-213ENST00000461743 SPATA8Q6RVD6 105 aa5.7□□□□□ -1.5
VPS52-213ENST00000461743 MT1FP04733 61 aa5.68□□□□□ -1.5
VPS52-213ENST00000461743 A0A1B0GU69 56 aa5.67□□□□□ -1.5
VPS52-213ENST00000461743 LINC01554Q52M75 96 aa5.66□□□□□ -1.5
VPS52-213ENST00000461743 CRCT1Q9UGL9 99 aa5.66□□□□□ -1.5
VPS52-213ENST00000461743 KRTAP10-10P60014 251 aa5.65□□□□□ -1.5
VPS52-213ENST00000461743 PRAC1Q96KF2 57 aa5.65□□□□□ -1.5
VPS52-213ENST00000461743 KRTAP3-1Q9BYR8 98 aa5.65□□□□□ -1.5
VPS52-213ENST00000461743 S4R3F8 94 aa5.65□□□□□ -1.5
VPS52-213ENST00000461743 UQCR11O14957 56 aa5.62□□□□□ -1.51
VPS52-213ENST00000461743 MIR22HGQ0VDD5 57 aa5.62□□□□□ -1.51
VPS52-213ENST00000461743 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
VPS52-213ENST00000461743 KRTAP9-3Q9BYQ3 159 aa5.61□□□□□ -1.51
VPS52-213ENST00000461743 USH2AO75445 5202 aa5.58□□□□□ -1.52
VPS52-213ENST00000461743 CSAG1Q6PB30 78 aa5.57□□□□□ -1.52
VPS52-213ENST00000461743 ADM2Q7Z4H4 148 aa5.57□□□□□ -1.52
VPS52-213ENST00000461743 LCE2BO14633 110 aa5.55□□□□□ -1.52
VPS52-213ENST00000461743 SSPOA2VEC9 5147 aa5.49□□□□□ -1.53
VPS52-213ENST00000461743 H3BS24 57 aa5.46□□□□□ -1.54
VPS52-213ENST00000461743 H0YAA0 97 aa5.43□□□□□ -1.54
VPS52-213ENST00000461743 CRIPTQ9P021 101 aa5.4□□□□□ -1.54
VPS52-213ENST00000461743 KRTAP25-1Q3LHN0 102 aa5.38□□□□□ -1.55
VPS52-213ENST00000461743 KRTAP19-1Q8IUB9 90 aa5.38□□□□□ -1.55
VPS52-213ENST00000461743 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
VPS52-213ENST00000461743 KRTAP19-6Q3LI70 58 aa5.37□□□□□ -1.55
VPS52-213ENST00000461743 FCGBPQ9Y6R7 5405 aaPredicted RBP5.35□□□□□ -1.55
VPS52-213ENST00000461743 KRTAP19-8Q3LI54 63 aa5.32□□□□□ -1.56
VPS52-213ENST00000461743 A0A1B0GU33 70 aa5.28□□□□□ -1.56
VPS52-213ENST00000461743 ROMO1P60602 79 aa5.28□□□□□ -1.56
VPS52-213ENST00000461743 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.26□□□□□ -1.57
VPS52-213ENST00000461743 K7ERS5 55 aa5.26□□□□□ -1.57
VPS52-213ENST00000461743 MT1BP07438 61 aa5.26□□□□□ -1.57
VPS52-213ENST00000461743 R4GN34 69 aa5.18□□□□□ -1.58
VPS52-213ENST00000461743 P0C880 135 aa5.17□□□□□ -1.58
VPS52-213ENST00000461743 KRTAP9-7A8MTY7 169 aa5.15□□□□□ -1.59
VPS52-213ENST00000461743 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
VPS52-213ENST00000461743 KRTAP10-5P60370 271 aa5.14□□□□□ -1.59
VPS52-213ENST00000461743 M0QZ58 72 aa5.13□□□□□ -1.59
VPS52-213ENST00000461743 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
VPS52-213ENST00000461743 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
VPS52-213ENST00000461743 SPINT4Q6UDR6 99 aa5.01□□□□□ -1.61
VPS52-213ENST00000461743 SYNE2Q8WXH0 6885 aaKnown RBP5□□□□□ -1.61
VPS52-213ENST00000461743 KRTAP6-3Q3LI67 103 aa4.99□□□□□ -1.61
VPS52-213ENST00000461743 MT1XP80297 61 aa4.98□□□□□ -1.61
VPS52-213ENST00000461743 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
VPS52-213ENST00000461743 KRTAP13-4Q3LI77 160 aa4.94□□□□□ -1.62
VPS52-213ENST00000461743 A0A0D9SG42 100 aa4.9□□□□□ -1.63
VPS52-213ENST00000461743 KRTAP12-2P59991 146 aa4.89□□□□□ -1.63
VPS52-213ENST00000461743 NDUFAF8A1L188 74 aa4.86□□□□□ -1.63
VPS52-213ENST00000461743 KRTAP5-9P26371 169 aa4.86□□□□□ -1.63
VPS52-213ENST00000461743 C10orf95Q9H7T3 257 aa4.85□□□□□ -1.63
VPS52-213ENST00000461743 KRTAP12-1P59990 96 aa4.81□□□□□ -1.64
VPS52-213ENST00000461743 MUC12Q9UKN1 5478 aa4.81□□□□□ -1.64
VPS52-213ENST00000461743 KMT2DO14686 5537 aa4.8□□□□□ -1.64
VPS52-213ENST00000461743 CAMK2N1Q7Z7J9 78 aa4.77□□□□□ -1.65
VPS52-213ENST00000461743 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
VPS52-213ENST00000461743 KRTAP8-1Q8IUC2 63 aa4.74□□□□□ -1.65
VPS52-213ENST00000461743 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
VPS52-213ENST00000461743 NEBP20929 6669 aa4.73□□□□□ -1.65
VPS52-213ENST00000461743 MDN1Q9NU22 5596 aa4.71□□□□□ -1.65
VPS52-213ENST00000461743 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
VPS52-213ENST00000461743 KRTAP4-8A0A0G2JLE6 195 aa4.65□□□□□ -1.67
VPS52-213ENST00000461743 KRTAP4-8Q9BYQ9 185 aa4.65□□□□□ -1.67
VPS52-213ENST00000461743 SPRR2EP22531 72 aa4.6□□□□□ -1.67
VPS52-213ENST00000461743 SPRR2BP35325 72 aa4.6□□□□□ -1.67
VPS52-213ENST00000461743 SPRR2AP35326 72 aa4.6□□□□□ -1.67
VPS52-213ENST00000461743 LUZP6Q538Z0 58 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms