RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 hDV103S1A0JD37 113 aa3.71□□□□□ -1.82
VIM-202ENST00000421459 ATOX1O00244 68 aa3.71□□□□□ -1.82
VIM-202ENST00000421459 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
VIM-202ENST00000421459 KMT2DO14686 5537 aa3.7□□□□□ -1.82
VIM-202ENST00000421459 MT1BP07438 61 aa3.7□□□□□ -1.82
VIM-202ENST00000421459 MRPL34Q9BQ48 92 aaKnown RBP3.7□□□□□ -1.82
VIM-202ENST00000421459 OCR1Q9BZK8 76 aa3.7□□□□□ -1.82
VIM-202ENST00000421459 IGKV2D-30A0A075B6S6 120 aa3.69□□□□□ -1.82
VIM-202ENST00000421459 A6NN06 94 aa3.69□□□□□ -1.82
VIM-202ENST00000421459 IGKV2-30P06310 120 aa3.69□□□□□ -1.82
VIM-202ENST00000421459 SMIM20Q8N5G0 67 aa3.69□□□□□ -1.82
VIM-202ENST00000421459 KRTAP4-9Q9BYQ8 210 aa3.69□□□□□ -1.82
VIM-202ENST00000421459 KRTAP20-1Q3LI63 56 aa3.68□□□□□ -1.82
VIM-202ENST00000421459 Q5W150 140 aa3.68□□□□□ -1.82
VIM-202ENST00000421459 TRAV7A0A075B6U4 112 aa3.67□□□□□ -1.82
VIM-202ENST00000421459 NDUFS5O43920 106 aa3.67□□□□□ -1.82
VIM-202ENST00000421459 C4orf26Q17RF5 130 aa3.66□□□□□ -1.82
VIM-202ENST00000421459 C5orf47Q569G3 176 aa3.66□□□□□ -1.82
VIM-202ENST00000421459 SERP2Q8N6R1 65 aa3.66□□□□□ -1.82
VIM-202ENST00000421459 TP53AIP1Q9HCN2 124 aa3.66□□□□□ -1.82
VIM-202ENST00000421459 UQCRQO14949 82 aa3.65□□□□□ -1.83
VIM-202ENST00000421459 ANAPC13Q9BS18 74 aa3.65□□□□□ -1.83
VIM-202ENST00000421459 Q5VV11 94 aa3.64□□□□□ -1.83
VIM-202ENST00000421459 COX7CP15954 63 aa3.63□□□□□ -1.83
VIM-202ENST00000421459 KRTAP10-5P60370 271 aa3.62□□□□□ -1.83
VIM-202ENST00000421459 KRTAP19-8Q3LI54 63 aa3.62□□□□□ -1.83
VIM-202ENST00000421459 C7orf65Q6ZTY9 151 aa3.62□□□□□ -1.83
VIM-202ENST00000421459 KRTAP3-1Q9BYR8 98 aa3.62□□□□□ -1.83
VIM-202ENST00000421459 TRAV22A0A0B4J277 110 aa3.61□□□□□ -1.83
VIM-202ENST00000421459 H3BPC8 53 aa3.6□□□□□ -1.83
VIM-202ENST00000421459 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
VIM-202ENST00000421459 PCP4P48539 62 aa3.6□□□□□ -1.83
VIM-202ENST00000421459 SPRR2GQ9BYE4 73 aa3.6□□□□□ -1.83
VIM-202ENST00000421459 H0Y9P7 68 aa3.59□□□□□ -1.83
VIM-202ENST00000421459 MP68P56378 58 aa3.59□□□□□ -1.83
VIM-202ENST00000421459 KLKP1Q107X0 134 aa3.59□□□□□ -1.83
VIM-202ENST00000421459 CCDC179H3BU77 68 aa3.58□□□□□ -1.84
VIM-202ENST00000421459 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
VIM-202ENST00000421459 LCA10Q71F78 164 aa3.57□□□□□ -1.84
VIM-202ENST00000421459 C20orf197Q8N268 126 aa3.57□□□□□ -1.84
VIM-202ENST00000421459 S4R3F8 94 aa3.57□□□□□ -1.84
VIM-202ENST00000421459 LOC101927531A0A1B0GV80 90 aa3.56□□□□□ -1.84
VIM-202ENST00000421459 C1orf64Q8NEQ6 169 aa3.56□□□□□ -1.84
VIM-202ENST00000421459 LINC00208Q96KT6 92 aa3.56□□□□□ -1.84
VIM-202ENST00000421459 CSAG1Q6PB30 78 aa3.54□□□□□ -1.84
VIM-202ENST00000421459 CYP4F30PQ9H0H9 118 aa3.54□□□□□ -1.84
VIM-202ENST00000421459 CYSTM1Q9H1C7 97 aa3.54□□□□□ -1.84
VIM-202ENST00000421459 SNURFQ9Y675 71 aa3.54□□□□□ -1.84
VIM-202ENST00000421459 NDUFC1O43677 76 aa3.53□□□□□ -1.84
VIM-202ENST00000421459 H7BZZ5 65 aa3.52□□□□□ -1.85
VIM-202ENST00000421459 KRTAP2-3P0C7H8 128 aa3.52□□□□□ -1.85
VIM-202ENST00000421459 KRTAP2-4Q9BYR9 128 aa3.52□□□□□ -1.85
VIM-202ENST00000421459 KRTAP4-11Q9BYQ6 195 aa3.5□□□□□ -1.85
VIM-202ENST00000421459 H3BS24 57 aa3.49□□□□□ -1.85
VIM-202ENST00000421459 SPRR2FQ96RM1 72 aa3.49□□□□□ -1.85
VIM-202ENST00000421459 SPRR2EP22531 72 aa3.48□□□□□ -1.85
VIM-202ENST00000421459 SPRR2BP35325 72 aa3.48□□□□□ -1.85
VIM-202ENST00000421459 SPRR2AP35326 72 aa3.48□□□□□ -1.85
VIM-202ENST00000421459 SPANXA2-OT1Q8N9U9 137 aa3.48□□□□□ -1.85
VIM-202ENST00000421459 TMEM258P61165 79 aa3.47□□□□□ -1.85
VIM-202ENST00000421459 ATP5EP56381 51 aaPredicted RBP3.45□□□□□ -1.86
VIM-202ENST00000421459 DMAC1Q96GE9 116 aa3.43□□□□□ -1.86
VIM-202ENST00000421459 MT1XP80297 61 aa3.42□□□□□ -1.86
VIM-202ENST00000421459 CRIPTQ9P021 101 aa3.42□□□□□ -1.86
VIM-202ENST00000421459 A8MUN3 132 aa3.41□□□□□ -1.86
VIM-202ENST00000421459 LCE1AQ5T7P2 110 aa3.41□□□□□ -1.86
VIM-202ENST00000421459 KRTAP8-1Q8IUC2 63 aa3.4□□□□□ -1.87
VIM-202ENST00000421459 KRTAP2-2Q9BYT5 123 aa3.4□□□□□ -1.87
VIM-202ENST00000421459 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
VIM-202ENST00000421459 ACYP2P14621 99 aa3.37□□□□□ -1.87
VIM-202ENST00000421459 SPRR2DP22532 72 aa3.36□□□□□ -1.87
VIM-202ENST00000421459 ADM2Q7Z4H4 148 aa3.36□□□□□ -1.87
VIM-202ENST00000421459 SERP1Q9Y6X1 66 aa3.36□□□□□ -1.87
VIM-202ENST00000421459 COA5Q86WW8 74 aa3.35□□□□□ -1.87
VIM-202ENST00000421459 RPS28P62857 69 aaKnown RBP3.34□□□□□ -1.87
VIM-202ENST00000421459 PRO2289Q9P1D8 64 aa3.34□□□□□ -1.87
VIM-202ENST00000421459 H0YAA0 97 aa3.33□□□□□ -1.88
VIM-202ENST00000421459 PLAC4Q8WY50 150 aa3.32□□□□□ -1.88
VIM-202ENST00000421459 GPR98Q8WXG9 6306 aa3.31□□□□□ -1.88
VIM-202ENST00000421459 KRTAP12-2P59991 146 aa3.31□□□□□ -1.88
VIM-202ENST00000421459 CHKB-CPT1BH3BT56 60 aa3.29□□□□□ -1.88
VIM-202ENST00000421459 P0C880 135 aa3.28□□□□□ -1.88
VIM-202ENST00000421459 KRTAP10-7P60409 375 aaPredicted RBP3.28□□□□□ -1.88
VIM-202ENST00000421459 SPTSSBQ8NFR3 76 aa3.27□□□□□ -1.89
VIM-202ENST00000421459 SMIM26A0A096LP01 95 aa3.26□□□□□ -1.89
VIM-202ENST00000421459 R4GN34 69 aa3.25□□□□□ -1.89
VIM-202ENST00000421459 M0QZ58 72 aa3.24□□□□□ -1.89
VIM-202ENST00000421459 DSTQ03001 7570 aaKnown RBP3.24□□□□□ -1.89
VIM-202ENST00000421459 LINC01554Q52M75 96 aa3.23□□□□□ -1.89
VIM-202ENST00000421459 KRTAP10-12P60413 245 aa3.22□□□□□ -1.89
VIM-202ENST00000421459 Q1T7F1 81 aa3.22□□□□□ -1.89
VIM-202ENST00000421459 LINC01558Q9Y6Z2 57 aa3.21□□□□□ -1.9
VIM-202ENST00000421459 V9GYY9 64 aa3.2□□□□□ -1.9
VIM-202ENST00000421459 LCE5AQ5TCM9 118 aa3.19□□□□□ -1.9
VIM-202ENST00000421459 A0A1B0GU69 56 aa3.15□□□□□ -1.91
VIM-202ENST00000421459 SEC61GP60059 68 aa3.14□□□□□ -1.91
VIM-202ENST00000421459 LCE4AQ5TA78 99 aa3.14□□□□□ -1.91
VIM-202ENST00000421459 PRR15LQ9BU68 103 aa3.14□□□□□ -1.91
VIM-202ENST00000421459 PSPHP1O15172 72 aa3.12□□□□□ -1.91
VIM-202ENST00000421459 A0A1B0GU33 70 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms