RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
HMGA1-201ENST00000311487 SPTSSBQ8NFR3 76 aa9.39□□□□□ -0.91
HMGA1-201ENST00000311487 A8MU10 97 aa9.38□□□□□ -0.91
HMGA1-201ENST00000311487 SPINK7P58062 85 aa9.38□□□□□ -0.91
HMGA1-201ENST00000311487 PRR15LQ9BU68 103 aa9.38□□□□□ -0.91
HMGA1-201ENST00000311487 LCA10Q71F78 164 aa9.37□□□□□ -0.91
HMGA1-201ENST00000311487 IGKV2D-30A0A075B6S6 120 aa9.37□□□□□ -0.91
HMGA1-201ENST00000311487 CDC42SE1Q9NRR8 79 aa9.37□□□□□ -0.91
HMGA1-201ENST00000311487 HRES1P13985 223 aa9.35□□□□□ -0.91
HMGA1-201ENST00000311487 COA5Q86WW8 74 aa9.35□□□□□ -0.91
HMGA1-201ENST00000311487 FAT4Q6V0I7 4981 aa9.34□□□□□ -0.91
HMGA1-201ENST00000311487 A6NED7 52 aa9.33□□□□□ -0.92
HMGA1-201ENST00000311487 KRTAP19-2Q3LHN2 52 aa9.27□□□□□ -0.93
HMGA1-201ENST00000311487 DMAC1Q96GE9 116 aa9.25□□□□□ -0.93
HMGA1-201ENST00000311487 COX6B2Q6YFQ2 88 aa9.23□□□□□ -0.93
HMGA1-201ENST00000311487 LCE2CQ5TA81 110 aa9.21□□□□□ -0.93
HMGA1-201ENST00000311487 ACYP2P14621 99 aa9.21□□□□□ -0.94
HMGA1-201ENST00000311487 LINC01558Q9Y6Z2 57 aa9.19□□□□□ -0.94
HMGA1-201ENST00000311487 H3BS24 57 aa9.13□□□□□ -0.95
HMGA1-201ENST00000311487 MT1HP80294 61 aa9.07□□□□□ -0.96
HMGA1-201ENST00000311487 FLGP20930 4061 aaPredicted RBP9.06□□□□□ -0.96
HMGA1-201ENST00000311487 LINC01554Q52M75 96 aa9.05□□□□□ -0.96
HMGA1-201ENST00000311487 LCE2AQ5TA79 106 aaPredicted RBP9.01□□□□□ -0.97
HMGA1-201ENST00000311487 KRTAP3-1Q9BYR8 98 aa9.01□□□□□ -0.97
HMGA1-201ENST00000311487 M0R2T5 61 aa9□□□□□ -0.97
HMGA1-201ENST00000311487 H1FX-AS1Q4G0G2 97 aa8.93□□□□□ -0.98
HMGA1-201ENST00000311487 PRAC1Q96KF2 57 aa8.92□□□□□ -0.98
HMGA1-201ENST00000311487 A0A1B0GU69 56 aa8.8□□□□□ -1
HMGA1-201ENST00000311487 KRTAP10-6P60371 365 aaPredicted RBP8.8□□□□□ -1
HMGA1-201ENST00000311487 ADM2Q7Z4H4 148 aa8.79□□□□□ -1
HMGA1-201ENST00000311487 S4R3F8 94 aa8.78□□□□□ -1
HMGA1-201ENST00000311487 SPATA8Q6RVD6 105 aa8.76□□□□□ -1.01
HMGA1-201ENST00000311487 LORP23490 312 aaPredicted RBP8.75□□□□□ -1.01
HMGA1-201ENST00000311487 KRTAP3-3Q9BYR6 98 aa8.7□□□□□ -1.02
HMGA1-201ENST00000311487 KRTAP9-8Q9BYQ0 159 aa8.66□□□□□ -1.02
HMGA1-201ENST00000311487 CSAG1Q6PB30 78 aa8.63□□□□□ -1.03
HMGA1-201ENST00000311487 MIR22HGQ0VDD5 57 aa8.62□□□□□ -1.03
HMGA1-201ENST00000311487 UQCR11O14957 56 aa8.61□□□□□ -1.03
HMGA1-201ENST00000311487 MT2AP02795 61 aa8.59□□□□□ -1.03
HMGA1-201ENST00000311487 MT1FP04733 61 aa8.56□□□□□ -1.04
HMGA1-201ENST00000311487 KRTAP10-10P60014 251 aa8.54□□□□□ -1.04
HMGA1-201ENST00000311487 A0A1B0GU33 70 aa8.45□□□□□ -1.06
HMGA1-201ENST00000311487 ROMO1P60602 79 aa8.44□□□□□ -1.06
HMGA1-201ENST00000311487 H0YAA0 97 aa8.41□□□□□ -1.06
HMGA1-201ENST00000311487 KRTAP25-1Q3LHN0 102 aa8.4□□□□□ -1.06
HMGA1-201ENST00000311487 KRTAP3-2Q9BYR7 98 aa8.39□□□□□ -1.07
HMGA1-201ENST00000311487 KRTAP9-2Q9BYQ4 174 aa8.36□□□□□ -1.07
HMGA1-201ENST00000311487 KRTAP9-3Q9BYQ3 159 aa8.35□□□□□ -1.07
HMGA1-201ENST00000311487 FSIP2Q5CZC0 6907 aa8.35□□□□□ -1.07
HMGA1-201ENST00000311487 LCE2DQ5TA82 110 aaPredicted RBP8.3□□□□□ -1.08
HMGA1-201ENST00000311487 P0C880 135 aa8.29□□□□□ -1.08
HMGA1-201ENST00000311487 LCE2BO14633 110 aa8.25□□□□□ -1.09
HMGA1-201ENST00000311487 KRTAP13-4Q3LI77 160 aa8.24□□□□□ -1.09
HMGA1-201ENST00000311487 USH2AO75445 5202 aa8.19□□□□□ -1.1
HMGA1-201ENST00000311487 KRTAP19-1Q8IUB9 90 aa8.19□□□□□ -1.1
HMGA1-201ENST00000311487 SPRR2GQ9BYE4 73 aa8.1□□□□□ -1.11
HMGA1-201ENST00000311487 A0A0D9SG42 100 aa8.09□□□□□ -1.11
HMGA1-201ENST00000311487 R4GN34 69 aa8.09□□□□□ -1.11
HMGA1-201ENST00000311487 M0QZ58 72 aa8.07□□□□□ -1.12
HMGA1-201ENST00000311487 CRIPTQ9P021 101 aa8.07□□□□□ -1.12
HMGA1-201ENST00000311487 K7ERS5 55 aa8.03□□□□□ -1.12
HMGA1-201ENST00000311487 SSPOA2VEC9 5147 aa8□□□□□ -1.13
HMGA1-201ENST00000311487 MT1BP07438 61 aa7.96□□□□□ -1.13
HMGA1-201ENST00000311487 CRCT1Q9UGL9 99 aa7.96□□□□□ -1.13
HMGA1-201ENST00000311487 KRTAP19-8Q3LI54 63 aa7.95□□□□□ -1.14
HMGA1-201ENST00000311487 KRTAP12-2P59991 146 aa7.92□□□□□ -1.14
HMGA1-201ENST00000311487 KRTAP12-1P59990 96 aa7.91□□□□□ -1.14
HMGA1-201ENST00000311487 A0A0A0MQY5 61 aa7.91□□□□□ -1.14
HMGA1-201ENST00000311487 SPINT4Q6UDR6 99 aa7.9□□□□□ -1.15
HMGA1-201ENST00000311487 KRTAP9-6A0A140TA67 174 aa7.86□□□□□ -1.15
HMGA1-201ENST00000311487 NDUFAF8A1L188 74 aa7.82□□□□□ -1.16
HMGA1-201ENST00000311487 KRTAP15-1Q3LI76 137 aa7.81□□□□□ -1.16
HMGA1-201ENST00000311487 PLAC4Q8WY50 150 aa7.77□□□□□ -1.17
HMGA1-201ENST00000311487 KRTAP19-6Q3LI70 58 aa7.76□□□□□ -1.17
HMGA1-201ENST00000311487 FCGBPQ9Y6R7 5405 aaPredicted RBP7.74□□□□□ -1.17
HMGA1-201ENST00000311487 KRTAP10-5P60370 271 aa7.61□□□□□ -1.19
HMGA1-201ENST00000311487 MT1XP80297 61 aa7.6□□□□□ -1.19
HMGA1-201ENST00000311487 CAMK2N1Q7Z7J9 78 aa7.53□□□□□ -1.2
HMGA1-201ENST00000311487 LUZP6Q538Z0 58 aa7.52□□□□□ -1.21
HMGA1-201ENST00000311487 PRO2289Q9P1D8 64 aa7.5□□□□□ -1.21
HMGA1-201ENST00000311487 MACF1Q9UPN3 7388 aaKnown RBP7.49□□□□□ -1.21
HMGA1-201ENST00000311487 C10orf95Q9H7T3 257 aa7.48□□□□□ -1.21
HMGA1-201ENST00000311487 SYNE2Q8WXH0 6885 aaKnown RBP7.4□□□□□ -1.23
HMGA1-201ENST00000311487 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.39□□□□□ -1.23
HMGA1-201ENST00000311487 KMT2DO14686 5537 aa7.36□□□□□ -1.23
HMGA1-201ENST00000311487 KRTAP10-7P60409 375 aaPredicted RBP7.33□□□□□ -1.24
HMGA1-201ENST00000311487 KRTAP4-8A0A0G2JLE6 195 aa7.21□□□□□ -1.25
HMGA1-201ENST00000311487 KRTAP4-8Q9BYQ9 185 aa7.21□□□□□ -1.25
HMGA1-201ENST00000311487 KRTAP10-12P60413 245 aa7.17□□□□□ -1.26
HMGA1-201ENST00000311487 TNP1P09430 55 aa7.15□□□□□ -1.27
HMGA1-201ENST00000311487 KRTAP9-7A8MTY7 169 aa7.14□□□□□ -1.27
HMGA1-201ENST00000311487 PP632Q6XCG6 107 aa7.08□□□□□ -1.28
HMGA1-201ENST00000311487 KRTAP8-1Q8IUC2 63 aa7.05□□□□□ -1.28
HMGA1-201ENST00000311487 KRTAP6-3Q3LI67 103 aa7□□□□□ -1.29
HMGA1-201ENST00000311487 KRTAP23-1A1A580 65 aa6.99□□□□□ -1.29
HMGA1-201ENST00000311487 MUC12Q9UKN1 5478 aa6.95□□□□□ -1.3
HMGA1-201ENST00000311487 SPRR2FQ96RM1 72 aa6.95□□□□□ -1.3
HMGA1-201ENST00000311487 LCE3AQ5TA76 89 aa6.91□□□□□ -1.3
HMGA1-201ENST00000311487 KRTAP5-9P26371 169 aa6.9□□□□□ -1.3
HMGA1-201ENST00000311487 MDN1Q9NU22 5596 aa6.84□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms