RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 TPRXLQ17RH7 258 aa15.02□□□□□ -0.01
SMARCD3-201ENST00000262188 C8orf17Q9NRJ1 99 aa15.02□□□□□ -0.01
SMARCD3-201ENST00000262188 ACYP2P14621 99 aa15□□□□□ -0.01
SMARCD3-201ENST00000262188 CSAG1Q6PB30 78 aa14.97□□□□□ -0.01
SMARCD3-201ENST00000262188 KRTAP16-1A8MUX0 517 aa14.94□□□□□ -0.02
SMARCD3-201ENST00000262188 UQCR11O14957 56 aa14.94□□□□□ -0.02
SMARCD3-201ENST00000262188 MIR22HGQ0VDD5 57 aa14.93□□□□□ -0.02
SMARCD3-201ENST00000262188 XP32Q5T750 250 aa14.93□□□□□ -0.02
SMARCD3-201ENST00000262188 A0A1B0GU69 56 aa14.93□□□□□ -0.02
SMARCD3-201ENST00000262188 MRPL34Q9BQ48 92 aaKnown RBP14.79□□□□□ -0.04
SMARCD3-201ENST00000262188 DMAC1Q96GE9 116 aa14.76□□□□□ -0.05
SMARCD3-201ENST00000262188 C20orf166-AS1Q96NR2 134 aa14.76□□□□□ -0.05
SMARCD3-201ENST00000262188 A8MUU9 505 aa14.74□□□□□ -0.05
SMARCD3-201ENST00000262188 ROMO1P60602 79 aa14.73□□□□□ -0.05
SMARCD3-201ENST00000262188 RPL37P61927 97 aaKnown RBP14.71□□□□□ -0.05
SMARCD3-201ENST00000262188 UBR4Q5T4S7 5183 aa14.63□□□□□ -0.07
SMARCD3-201ENST00000262188 KRTAP25-1Q3LHN0 102 aa14.6□□□□□ -0.07
SMARCD3-201ENST00000262188 MUC17Q685J3 4493 aa14.56□□□□□ -0.08
SMARCD3-201ENST00000262188 Q5W150 140 aa14.54□□□□□ -0.08
SMARCD3-201ENST00000262188 SEC61BP60468 96 aaKnown RBP14.49□□□□□ -0.09
SMARCD3-201ENST00000262188 KRTAP4-1Q9BYQ7 146 aa14.43□□□□□ -0.1
SMARCD3-201ENST00000262188 MUC2Q02817 5179 aa14.41□□□□□ -0.1
SMARCD3-201ENST00000262188 RNF213Q63HN8 5207 aa14.38□□□□□ -0.11
SMARCD3-201ENST00000262188 IGKV2D-30A0A075B6S6 120 aa14.27□□□□□ -0.13
SMARCD3-201ENST00000262188 IGKV2-30P06310 120 aa14.27□□□□□ -0.13
SMARCD3-201ENST00000262188 P0C880 135 aa14.15□□□□□ -0.14
SMARCD3-201ENST00000262188 H0YAA0 97 aa13.94□□□□□ -0.18
SMARCD3-201ENST00000262188 A0A0A0MQY5 61 aa13.9□□□□□ -0.18
SMARCD3-201ENST00000262188 KRTAP19-2Q3LHN2 52 aa13.9□□□□□ -0.18
SMARCD3-201ENST00000262188 K7ERS5 55 aa13.89□□□□□ -0.19
SMARCD3-201ENST00000262188 FAT4Q6V0I7 4981 aa13.84□□□□□ -0.19
SMARCD3-201ENST00000262188 LCE2CQ5TA81 110 aa13.78□□□□□ -0.2
SMARCD3-201ENST00000262188 COX6B2Q6YFQ2 88 aa13.78□□□□□ -0.2
SMARCD3-201ENST00000262188 A0A1B0GU33 70 aa13.77□□□□□ -0.21
SMARCD3-201ENST00000262188 KRTAP3-1Q9BYR8 98 aa13.76□□□□□ -0.21
SMARCD3-201ENST00000262188 H1FX-AS1Q4G0G2 97 aa13.7□□□□□ -0.22
SMARCD3-201ENST00000262188 SPINT4Q6UDR6 99 aa13.67□□□□□ -0.22
SMARCD3-201ENST00000262188 FLGP20930 4061 aaPredicted RBP13.61□□□□□ -0.23
SMARCD3-201ENST00000262188 KRTAP15-1Q3LI76 137 aa13.61□□□□□ -0.23
SMARCD3-201ENST00000262188 NDUFAF8A1L188 74 aa13.58□□□□□ -0.24
SMARCD3-201ENST00000262188 MT1HP80294 61 aa13.52□□□□□ -0.24
SMARCD3-201ENST00000262188 CRIPTQ9P021 101 aa13.43□□□□□ -0.26
SMARCD3-201ENST00000262188 S4R3F8 94 aa13.37□□□□□ -0.27
SMARCD3-201ENST00000262188 M0R2T5 61 aa13.35□□□□□ -0.27
SMARCD3-201ENST00000262188 LCE2AQ5TA79 106 aaPredicted RBP13.34□□□□□ -0.27
SMARCD3-201ENST00000262188 KRTAP3-3Q9BYR6 98 aa13.29□□□□□ -0.28
SMARCD3-201ENST00000262188 LUZP6Q538Z0 58 aa13.12□□□□□ -0.31
SMARCD3-201ENST00000262188 KRTAP10-6P60371 365 aaPredicted RBP13.09□□□□□ -0.31
SMARCD3-201ENST00000262188 LORP23490 312 aaPredicted RBP13.03□□□□□ -0.32
SMARCD3-201ENST00000262188 KRTAP9-8Q9BYQ0 159 aa12.95□□□□□ -0.34
SMARCD3-201ENST00000262188 MT2AP02795 61 aa12.87□□□□□ -0.35
SMARCD3-201ENST00000262188 C10orf95Q9H7T3 257 aa12.87□□□□□ -0.35
SMARCD3-201ENST00000262188 MT1FP04733 61 aa12.81□□□□□ -0.36
SMARCD3-201ENST00000262188 KRTAP10-10P60014 251 aa12.74□□□□□ -0.37
SMARCD3-201ENST00000262188 KRTAP3-2Q9BYR7 98 aa12.67□□□□□ -0.38
SMARCD3-201ENST00000262188 KRTAP13-4Q3LI77 160 aa12.63□□□□□ -0.39
SMARCD3-201ENST00000262188 A0A0D9SG42 100 aa12.61□□□□□ -0.39
SMARCD3-201ENST00000262188 KRTAP9-3Q9BYQ3 159 aa12.49□□□□□ -0.41
SMARCD3-201ENST00000262188 KRTAP12-2P59991 146 aa12.4□□□□□ -0.42
SMARCD3-201ENST00000262188 KRTAP19-1Q8IUB9 90 aa12.36□□□□□ -0.43
SMARCD3-201ENST00000262188 PLAC4Q8WY50 150 aa12.35□□□□□ -0.43
SMARCD3-201ENST00000262188 KRTAP12-1P59990 96 aa12.34□□□□□ -0.43
SMARCD3-201ENST00000262188 R4GN34 69 aa12.29□□□□□ -0.44
SMARCD3-201ENST00000262188 M0QZ58 72 aa12.29□□□□□ -0.44
SMARCD3-201ENST00000262188 LCE2BO14633 110 aa12.29□□□□□ -0.44
SMARCD3-201ENST00000262188 SPRR2GQ9BYE4 73 aa12.27□□□□□ -0.45
SMARCD3-201ENST00000262188 LCE2DQ5TA82 110 aaPredicted RBP12.23□□□□□ -0.45
SMARCD3-201ENST00000262188 KRTAP9-2Q9BYQ4 174 aa12.16□□□□□ -0.46
SMARCD3-201ENST00000262188 USH2AO75445 5202 aa12.15□□□□□ -0.46
SMARCD3-201ENST00000262188 CAMK2N1Q7Z7J9 78 aa12.1□□□□□ -0.47
SMARCD3-201ENST00000262188 FSIP2Q5CZC0 6907 aa12.04□□□□□ -0.48
SMARCD3-201ENST00000262188 KRTAP19-8Q3LI54 63 aa12.02□□□□□ -0.49
SMARCD3-201ENST00000262188 MT1BP07438 61 aa11.99□□□□□ -0.49
SMARCD3-201ENST00000262188 PP632Q6XCG6 107 aa11.89□□□□□ -0.51
SMARCD3-201ENST00000262188 SSPOA2VEC9 5147 aa11.86□□□□□ -0.51
SMARCD3-201ENST00000262188 PRO2289Q9P1D8 64 aa11.67□□□□□ -0.54
SMARCD3-201ENST00000262188 CRCT1Q9UGL9 99 aa11.61□□□□□ -0.55
SMARCD3-201ENST00000262188 KRTAP19-6Q3LI70 58 aa11.56□□□□□ -0.56
SMARCD3-201ENST00000262188 MT1XP80297 61 aa11.48□□□□□ -0.57
SMARCD3-201ENST00000262188 SPRR5A0A1B0GTR4 108 aa11.48□□□□□ -0.57
SMARCD3-201ENST00000262188 KRTAP10-5P60370 271 aa11.45□□□□□ -0.58
SMARCD3-201ENST00000262188 FCGBPQ9Y6R7 5405 aaPredicted RBP11.43□□□□□ -0.58
SMARCD3-201ENST00000262188 KRTAP9-6A0A140TA67 174 aa11.37□□□□□ -0.59
SMARCD3-201ENST00000262188 INE1O15225 51 aa11.34□□□□□ -0.59
SMARCD3-201ENST00000262188 KRTAP23-1A1A580 65 aa11.3□□□□□ -0.6
SMARCD3-201ENST00000262188 KRTAP10-7P60409 375 aaPredicted RBP11.04□□□□□ -0.64
SMARCD3-201ENST00000262188 KMT2DO14686 5537 aa10.94□□□□□ -0.66
SMARCD3-201ENST00000262188 MACF1Q9UPN3 7388 aaKnown RBP10.9□□□□□ -0.66
SMARCD3-201ENST00000262188 KRTAP10-12P60413 245 aa10.84□□□□□ -0.67
SMARCD3-201ENST00000262188 TNP1P09430 55 aa10.79□□□□□ -0.68
SMARCD3-201ENST00000262188 KRTAP4-8A0A0G2JLE6 195 aa10.79□□□□□ -0.68
SMARCD3-201ENST00000262188 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.79□□□□□ -0.68
SMARCD3-201ENST00000262188 KRTAP4-8Q9BYQ9 185 aa10.79□□□□□ -0.68
SMARCD3-201ENST00000262188 SYNE2Q8WXH0 6885 aaKnown RBP10.67□□□□□ -0.7
SMARCD3-201ENST00000262188 LCE3AQ5TA76 89 aa10.54□□□□□ -0.72
SMARCD3-201ENST00000262188 KRTAP8-1Q8IUC2 63 aa10.52□□□□□ -0.73
SMARCD3-201ENST00000262188 KRTAP9-7A8MTY7 169 aa10.35□□□□□ -0.75
SMARCD3-201ENST00000262188 KRTAP6-3Q3LI67 103 aa10.3□□□□□ -0.76
SMARCD3-201ENST00000262188 SPRR2FQ96RM1 72 aa10.29□□□□□ -0.76
SMARCD3-201ENST00000262188 KRTAP19-5Q3LI72 72 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms