RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 J3KT08 172 aa10.18□□□□□ -0.78
CLN3-256ENST00000637107 KRTAP1-4P0C5Y4 121 aa10.18□□□□□ -0.78
CLN3-256ENST00000637107 WFDC13Q8IUB5 93 aa10.18□□□□□ -0.78
CLN3-256ENST00000637107 KRTAP29-1A8MX34 341 aaPredicted RBP10.17□□□□□ -0.78
CLN3-256ENST00000637107 TNXBP22105 4242 aa10.17□□□□□ -0.78
CLN3-256ENST00000637107 NDUFC1O43677 76 aa10.16□□□□□ -0.78
CLN3-256ENST00000637107 OXTP01178 125 aa10.16□□□□□ -0.78
CLN3-256ENST00000637107 Q96NJ1 140 aa10.16□□□□□ -0.78
CLN3-256ENST00000637107 FAM236DA0A1B0GTK5 79 aa10.15□□□□□ -0.79
CLN3-256ENST00000637107 FAM236CP0DP71 79 aa10.15□□□□□ -0.79
CLN3-256ENST00000637107 RPS28P62857 69 aaKnown RBP10.15□□□□□ -0.79
CLN3-256ENST00000637107 CASC2Q6XLA1 102 aa10.12□□□□□ -0.79
CLN3-256ENST00000637107 MT1HL1P0DM35 61 aa10.11□□□□□ -0.79
CLN3-256ENST00000637107 J3QL48 77 aa10.11□□□□□ -0.79
CLN3-256ENST00000637107 PRR26Q8N8Z3 221 aa10.11□□□□□ -0.79
CLN3-256ENST00000637107 DMBT1Q9UGM3 2413 aaPredicted RBP10.1□□□□□ -0.79
CLN3-256ENST00000637107 NDUFB1O75438 58 aa10.09□□□□□ -0.79
CLN3-256ENST00000637107 C5orf47Q569G3 176 aa10.09□□□□□ -0.79
CLN3-256ENST00000637107 A0A087X002 238 aa10.08□□□□□ -0.8
CLN3-256ENST00000637107 MMP24-AS1A0A0U1RRL7 71 aa10.08□□□□□ -0.8
CLN3-256ENST00000637107 HERC1Q15751 4861 aa10.08□□□□□ -0.8
CLN3-256ENST00000637107 KRTAP10-8P60410 259 aa10.07□□□□□ -0.8
CLN3-256ENST00000637107 SSBP3-AS1Q7Z2R9 100 aa10.06□□□□□ -0.8
CLN3-256ENST00000637107 ZCCHC13Q8WW36 166 aaKnown RBP10.05□□□□□ -0.8
CLN3-256ENST00000637107 CD164Q04900 197 aa10.03□□□□□ -0.8
CLN3-256ENST00000637107 ATP5EP56381 51 aaPredicted RBP10.02□□□□□ -0.81
CLN3-256ENST00000637107 KRTAP13-2Q52LG2 175 aa10.02□□□□□ -0.81
CLN3-256ENST00000637107 hDV103S1A0JD37 113 aa10.01□□□□□ -0.81
CLN3-256ENST00000637107 FAM229BQ4G0N7 80 aa10.01□□□□□ -0.81
CLN3-256ENST00000637107 A0A1B0GVX0 72 aa10.01□□□□□ -0.81
CLN3-256ENST00000637107 C8orf17Q9NRJ1 99 aa10.01□□□□□ -0.81
CLN3-256ENST00000637107 SERP1Q9Y6X1 66 aa10.01□□□□□ -0.81
CLN3-256ENST00000637107 ASB16-AS1Q495Z4 193 aa9.99□□□□□ -0.81
CLN3-256ENST00000637107 MP68P56378 58 aa9.98□□□□□ -0.81
CLN3-256ENST00000637107 IGHV6-1A0A0B4J1U7 121 aa9.97□□□□□ -0.81
CLN3-256ENST00000637107 TYMSOSQ8TAI1 123 aa9.97□□□□□ -0.81
CLN3-256ENST00000637107 H0Y9P7 68 aa9.95□□□□□ -0.82
CLN3-256ENST00000637107 LINC00208Q96KT6 92 aa9.94□□□□□ -0.82
CLN3-256ENST00000637107 H3BPC8 53 aa9.92□□□□□ -0.82
CLN3-256ENST00000637107 NOTCH2NLQ7Z3S9 236 aa9.91□□□□□ -0.82
CLN3-256ENST00000637107 TRAV22A0A0B4J277 110 aa9.9□□□□□ -0.83
CLN3-256ENST00000637107 TP53AIP1Q9HCN2 124 aa9.89□□□□□ -0.83
CLN3-256ENST00000637107 MRPL34Q9BQ48 92 aaKnown RBP9.88□□□□□ -0.83
CLN3-256ENST00000637107 Q5XG85 94 aa9.86□□□□□ -0.83
CLN3-256ENST00000637107 C1orf64Q8NEQ6 169 aa9.86□□□□□ -0.83
CLN3-256ENST00000637107 LINC00304Q8N9R0 145 aa9.85□□□□□ -0.83
CLN3-256ENST00000637107 NDUFS5O43920 106 aa9.84□□□□□ -0.83
CLN3-256ENST00000637107 C1orf195Q5TG92 126 aa9.82□□□□□ -0.84
CLN3-256ENST00000637107 C8orf87E5RJ46 101 aa9.81□□□□□ -0.84
CLN3-256ENST00000637107 SMIM26A0A096LP01 95 aa9.8□□□□□ -0.84
CLN3-256ENST00000637107 CYP4F30PQ9H0H9 118 aa9.8□□□□□ -0.84
CLN3-256ENST00000637107 HMCN2Q8NDA2 5059 aa9.79□□□□□ -0.84
CLN3-256ENST00000637107 LIMD2Q9BT23 127 aa9.78□□□□□ -0.84
CLN3-256ENST00000637107 PRR4Q16378 134 aa9.78□□□□□ -0.84
CLN3-256ENST00000637107 C4orf48Q5BLP8 95 aa9.77□□□□□ -0.85
CLN3-256ENST00000637107 SPAG11AQ6PDA7 123 aa9.76□□□□□ -0.85
CLN3-256ENST00000637107 SPANXA2-OT1Q8N9U9 137 aa9.76□□□□□ -0.85
CLN3-256ENST00000637107 FP248Q71RG6 208 aaPredicted RBP9.74□□□□□ -0.85
CLN3-256ENST00000637107 LINC00313P59037 77 aa9.74□□□□□ -0.85
CLN3-256ENST00000637107 SPINK1P00995 79 aa9.72□□□□□ -0.85
CLN3-256ENST00000637107 C4orf26Q17RF5 130 aa9.72□□□□□ -0.85
CLN3-256ENST00000637107 RETNLBQ9BQ08 111 aa9.7□□□□□ -0.86
CLN3-256ENST00000637107 PCOTHQ58A44 107 aa9.69□□□□□ -0.86
CLN3-256ENST00000637107 Q5W150 140 aa9.69□□□□□ -0.86
CLN3-256ENST00000637107 KRTAP13-3Q3SY46 172 aa9.68□□□□□ -0.86
CLN3-256ENST00000637107 IGLV7-46A0A075B6I9 117 aa9.66□□□□□ -0.86
CLN3-256ENST00000637107 RPS29P62273 56 aaKnown RBP9.66□□□□□ -0.86
CLN3-256ENST00000637107 Q8N9P0 234 aaPredicted RBP9.66□□□□□ -0.86
CLN3-256ENST00000637107 KRTAP16-1A8MUX0 517 aa9.65□□□□□ -0.86
CLN3-256ENST00000637107 LPAP08519 4548 aa9.65□□□□□ -0.86
CLN3-256ENST00000637107 LOC101927531A0A1B0GV80 90 aa9.63□□□□□ -0.87
CLN3-256ENST00000637107 LRP2P98164 4655 aa9.61□□□□□ -0.87
CLN3-256ENST00000637107 MPLKIPQ8TAP9 179 aa9.6□□□□□ -0.87
CLN3-256ENST00000637107 Q1T7F1 81 aa9.51□□□□□ -0.89
CLN3-256ENST00000637107 COA5Q86WW8 74 aa9.51□□□□□ -0.89
CLN3-256ENST00000637107 IGKV2-30P06310 120 aa9.49□□□□□ -0.89
CLN3-256ENST00000637107 UBR4Q5T4S7 5183 aa9.48□□□□□ -0.89
CLN3-256ENST00000637107 HRES1P13985 223 aa9.44□□□□□ -0.9
CLN3-256ENST00000637107 TPRXLQ17RH7 258 aa9.44□□□□□ -0.9
CLN3-256ENST00000637107 V9GYY9 64 aa9.41□□□□□ -0.9
CLN3-256ENST00000637107 IGKV2D-30A0A075B6S6 120 aa9.37□□□□□ -0.91
CLN3-256ENST00000637107 C9orf92A6NGG3 77 aa9.36□□□□□ -0.91
CLN3-256ENST00000637107 PSPHP1O15172 72 aa9.35□□□□□ -0.91
CLN3-256ENST00000637107 DMAC1Q96GE9 116 aa9.35□□□□□ -0.91
CLN3-256ENST00000637107 ACYP2P14621 99 aa9.35□□□□□ -0.91
CLN3-256ENST00000637107 A8MUN3 132 aa9.33□□□□□ -0.92
CLN3-256ENST00000637107 A8MUU9 505 aa9.32□□□□□ -0.92
CLN3-256ENST00000637107 C20orf166-AS1Q96NR2 134 aa9.32□□□□□ -0.92
CLN3-256ENST00000637107 XP32Q5T750 250 aa9.28□□□□□ -0.92
CLN3-256ENST00000637107 C7orf65Q6ZTY9 151 aa9.27□□□□□ -0.93
CLN3-256ENST00000637107 RNF213Q63HN8 5207 aa9.27□□□□□ -0.93
CLN3-256ENST00000637107 Q5VV11 94 aa9.27□□□□□ -0.93
CLN3-256ENST00000637107 BRK1Q8WUW1 75 aa9.26□□□□□ -0.93
CLN3-256ENST00000637107 PRR15LQ9BU68 103 aa9.26□□□□□ -0.93
CLN3-256ENST00000637107 LINC01558Q9Y6Z2 57 aa9.25□□□□□ -0.93
CLN3-256ENST00000637107 PRO0628Q9UI54 55 aa9.25□□□□□ -0.93
CLN3-256ENST00000637107 MUC17Q685J3 4493 aa9.22□□□□□ -0.93
CLN3-256ENST00000637107 CHKB-CPT1BH3BT56 60 aa9.21□□□□□ -0.93
CLN3-256ENST00000637107 MUC2Q02817 5179 aa9.21□□□□□ -0.94
CLN3-256ENST00000637107 Q75L30 129 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms