RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 RHPN1-AS1Q9BWJ2 59 aa3.67□□□□□ -1.82
SMAD4-208ENST00000589706 IGHV3-11P01762 117 aa3.66□□□□□ -1.82
SMAD4-208ENST00000589706 Q8N9L7 120 aa3.66□□□□□ -1.82
SMAD4-208ENST00000589706 KRTAP4-16G5E9R7 235 aaPredicted RBP3.65□□□□□ -1.83
SMAD4-208ENST00000589706 RTL8CO15255 209 aa3.65□□□□□ -1.83
SMAD4-208ENST00000589706 COA5Q86WW8 74 aa3.65□□□□□ -1.83
SMAD4-208ENST00000589706 C9orf163Q8N9P6 203 aa3.65□□□□□ -1.83
SMAD4-208ENST00000589706 DEFB1P60022 68 aa3.64□□□□□ -1.83
SMAD4-208ENST00000589706 SPINK13Q1W4C9 94 aa3.64□□□□□ -1.83
SMAD4-208ENST00000589706 ZNF706Q9Y5V0 76 aaPredicted RBP3.64□□□□□ -1.83
SMAD4-208ENST00000589706 HSPG2P98160 4391 aa3.64□□□□□ -1.83
SMAD4-208ENST00000589706 IGLV5-48A0A075B6I7 105 aa3.63□□□□□ -1.83
SMAD4-208ENST00000589706 IGLV1-51P01701 117 aa3.63□□□□□ -1.83
SMAD4-208ENST00000589706 ST20-AS1Q8NBB2 130 aa3.63□□□□□ -1.83
SMAD4-208ENST00000589706 XAGE1AQ9HD64 81 aa3.63□□□□□ -1.83
SMAD4-208ENST00000589706 H0Y9P7 68 aa3.62□□□□□ -1.83
SMAD4-208ENST00000589706 C4orf3Q8WVX3 66 aa3.62□□□□□ -1.83
SMAD4-208ENST00000589706 SRRM2Q9UQ35 2752 aaKnown RBP3.61□□□□□ -1.83
SMAD4-208ENST00000589706 TRGV4A0A0C4DH28 118 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 LINC00959A0A1B0GUT2 108 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 A0A1W2PNM2 257 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 G3V318 75 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 REG3AQ06141 175 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 C5orf56Q8N8D9 126 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 Q8NAQ8 132 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 KLK12Q9UKR0 248 aa3.61□□□□□ -1.83
SMAD4-208ENST00000589706 VPS13DQ5THJ4 4388 aa3.6□□□□□ -1.83
SMAD4-208ENST00000589706 DYNC1H1Q14204 4646 aaKnown RBP3.6□□□□□ -1.83
SMAD4-208ENST00000589706 SPINK7P58062 85 aa3.6□□□□□ -1.83
SMAD4-208ENST00000589706 SPAG11AQ6PDA7 123 aa3.6□□□□□ -1.83
SMAD4-208ENST00000589706 SPRR4Q96PI1 79 aa3.6□□□□□ -1.83
SMAD4-208ENST00000589706 FAT2Q9NYQ8 4349 aa3.6□□□□□ -1.83
SMAD4-208ENST00000589706 PKD1P98161 4303 aa3.59□□□□□ -1.83
SMAD4-208ENST00000589706 IGKV2D-24A0A075B6R9 120 aa3.59□□□□□ -1.83
SMAD4-208ENST00000589706 IGKV3-7A0A075B6H7 116 aa3.58□□□□□ -1.84
SMAD4-208ENST00000589706 GVQW2A0A096LPI5 108 aaPredicted RBP3.58□□□□□ -1.84
SMAD4-208ENST00000589706 INSP01308 110 aa3.58□□□□□ -1.84
SMAD4-208ENST00000589706 SPATA8Q6RVD6 105 aa3.58□□□□□ -1.84
SMAD4-208ENST00000589706 DNAH2Q9P225 4427 aa3.58□□□□□ -1.84
SMAD4-208ENST00000589706 DNAH11Q96DT5 4516 aa3.57□□□□□ -1.84
SMAD4-208ENST00000589706 C1orf134Q5TEV5 83 aa3.57□□□□□ -1.84
SMAD4-208ENST00000589706 DNAH6Q9C0G6 4158 aa3.57□□□□□ -1.84
SMAD4-208ENST00000589706 DEFB131BA0A096LNP1 70 aa3.56□□□□□ -1.84
SMAD4-208ENST00000589706 K7EQZ3 153 aa3.56□□□□□ -1.84
SMAD4-208ENST00000589706 ROMO1P60602 79 aa3.56□□□□□ -1.84
SMAD4-208ENST00000589706 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
SMAD4-208ENST00000589706 ADM2Q7Z4H4 148 aa3.56□□□□□ -1.84
SMAD4-208ENST00000589706 DNAH17Q9UFH2 4485 aa3.55□□□□□ -1.84
SMAD4-208ENST00000589706 APLNQ9ULZ1 77 aa3.55□□□□□ -1.84
SMAD4-208ENST00000589706 HTN1P15515 57 aa3.54□□□□□ -1.84
SMAD4-208ENST00000589706 CSAG1Q6PB30 78 aa3.54□□□□□ -1.84
SMAD4-208ENST00000589706 TP53AIP1Q9HCN2 124 aa3.54□□□□□ -1.84
SMAD4-208ENST00000589706 TRGV1A0A0A0MS02 117 aa3.53□□□□□ -1.84
SMAD4-208ENST00000589706 C1orf137Q5JT78 98 aa3.53□□□□□ -1.84
SMAD4-208ENST00000589706 CAMK2N1Q7Z7J9 78 aa3.53□□□□□ -1.84
SMAD4-208ENST00000589706 Q8NDZ9 215 aa3.53□□□□□ -1.84
SMAD4-208ENST00000589706 FLG2Q5D862 2391 aaPredicted RBP3.52□□□□□ -1.85
SMAD4-208ENST00000589706 IGLV1-50A0A075B6I6 118 aa3.52□□□□□ -1.85
SMAD4-208ENST00000589706 IGKV3OR2-268A0A0C4DH90 116 aa3.52□□□□□ -1.85
SMAD4-208ENST00000589706 APOBP04114 4563 aaKnown RBP3.52□□□□□ -1.85
SMAD4-208ENST00000589706 MYCBP2O75592 4640 aa3.51□□□□□ -1.85
SMAD4-208ENST00000589706 UQCR11O14957 56 aa3.5□□□□□ -1.85
SMAD4-208ENST00000589706 DEFB131AP59861 70 aa3.5□□□□□ -1.85
SMAD4-208ENST00000589706 A8MWP4 228 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 HRES1P13985 223 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 MIR22HGQ0VDD5 57 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 DEFB135Q30KP9 77 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 Q5VSD8 79 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 WFDC13Q8IUB5 93 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 PRR34Q9NV39 138 aa3.49□□□□□ -1.85
SMAD4-208ENST00000589706 A0A087WSZ3 146 aa3.48□□□□□ -1.85
SMAD4-208ENST00000589706 CMC4P56277 68 aaPredicted RBP3.48□□□□□ -1.85
SMAD4-208ENST00000589706 KRTAP25-1Q3LHN0 102 aa3.47□□□□□ -1.85
SMAD4-208ENST00000589706 WFDC10BQ8IUB3 73 aa3.47□□□□□ -1.85
SMAD4-208ENST00000589706 HMCN2Q8NDA2 5059 aa3.47□□□□□ -1.85
SMAD4-208ENST00000589706 LRP1BQ9NZR2 4599 aa3.46□□□□□ -1.86
SMAD4-208ENST00000589706 A0A1B0GU69 56 aa3.46□□□□□ -1.86
SMAD4-208ENST00000589706 ZNF861PO60384 105 aa3.46□□□□□ -1.86
SMAD4-208ENST00000589706 UNQ6190/PRO20217Q6UXQ8 127 aa3.46□□□□□ -1.86
SMAD4-208ENST00000589706 ACYP2P14621 99 aa3.45□□□□□ -1.86
SMAD4-208ENST00000589706 DEFB4AO15263 64 aa3.44□□□□□ -1.86
SMAD4-208ENST00000589706 DEFB105AQ8NG35 78 aa3.44□□□□□ -1.86
SMAD4-208ENST00000589706 VPS13BQ7Z7G8 4022 aa3.44□□□□□ -1.86
SMAD4-208ENST00000589706 IGKV2-24A0A0C4DH68 120 aa3.43□□□□□ -1.86
SMAD4-208ENST00000589706 PANO1I0J062 215 aa3.43□□□□□ -1.86
SMAD4-208ENST00000589706 SMR3BP02814 79 aaPredicted RBP3.43□□□□□ -1.86
SMAD4-208ENST00000589706 Q6ZRX8 168 aa3.43□□□□□ -1.86
SMAD4-208ENST00000589706 NOP10Q9NPE3 64 aaKnown RBP3.43□□□□□ -1.86
SMAD4-208ENST00000589706 C6orf48Q9UBA6 75 aa3.43□□□□□ -1.86
SMAD4-208ENST00000589706 RNF213Q63HN8 5207 aa3.43□□□□□ -1.86
SMAD4-208ENST00000589706 SPRR1AP35321 89 aa3.42□□□□□ -1.86
SMAD4-208ENST00000589706 UBE2DNLQ8IWF7 75 aa3.42□□□□□ -1.86
SMAD4-208ENST00000589706 DMAC1Q96GE9 116 aa3.42□□□□□ -1.86
SMAD4-208ENST00000589706 DNAH5Q8TE73 4624 aa3.41□□□□□ -1.86
SMAD4-208ENST00000589706 IGLV10-54A0A075B6I4 117 aa3.41□□□□□ -1.86
SMAD4-208ENST00000589706 KRTAP1-4P0C5Y4 121 aa3.41□□□□□ -1.86
SMAD4-208ENST00000589706 DEFB116Q30KQ4 102 aa3.41□□□□□ -1.86
SMAD4-208ENST00000589706 PCOTHQ58A44 107 aa3.41□□□□□ -1.86
SMAD4-208ENST00000589706 MMP24-AS1A0A0U1RRL7 71 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 ANGP03950 147 aaKnown RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms