RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 IGKV4-1P06312 121 aa3.64□□□□□ -1.83
LIG3-206ENST00000586058 RPS29P62273 56 aaKnown RBP3.64□□□□□ -1.83
LIG3-206ENST00000586058 KRTAP13-2Q52LG2 175 aa3.64□□□□□ -1.83
LIG3-206ENST00000586058 SACSQ9NZJ4 4579 aa3.63□□□□□ -1.83
LIG3-206ENST00000586058 ATOX1O00244 68 aa3.63□□□□□ -1.83
LIG3-206ENST00000586058 RYR2Q92736 4967 aa3.63□□□□□ -1.83
LIG3-206ENST00000586058 A8MWP4 228 aa3.62□□□□□ -1.83
LIG3-206ENST00000586058 KRTAP10-4P60372 401 aaPredicted RBP3.62□□□□□ -1.83
LIG3-206ENST00000586058 ASB16-AS1Q495Z4 193 aa3.62□□□□□ -1.83
LIG3-206ENST00000586058 A0A087WVE0 104 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 K7EQZ3 153 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 DEFB116Q30KQ4 102 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 Q5XG85 94 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 ANAPC13Q9BS18 74 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 DNAH5Q8TE73 4624 aa3.61□□□□□ -1.83
LIG3-206ENST00000586058 HCG22E2RYF7 251 aa3.6□□□□□ -1.83
LIG3-206ENST00000586058 C1orf195Q5TG92 126 aa3.6□□□□□ -1.83
LIG3-206ENST00000586058 LINC00472Q9H8W2 130 aa3.6□□□□□ -1.83
LIG3-206ENST00000586058 A0A1B0GVX0 72 aa3.59□□□□□ -1.83
LIG3-206ENST00000586058 DSCR10P59022 87 aa3.59□□□□□ -1.83
LIG3-206ENST00000586058 PRR15Q8IV56 129 aa3.59□□□□□ -1.83
LIG3-206ENST00000586058 Q8N9L7 120 aa3.59□□□□□ -1.83
LIG3-206ENST00000586058 DNAH11Q96DT5 4516 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 DNAH8Q96JB1 4490 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 IGHV6-1A0A0B4J1U7 121 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 C8orf87E5RJ46 101 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 CASC2Q6XLA1 102 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 KRTAP3-1Q9BYR8 98 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 PKHD1P08F94 4074 aa3.58□□□□□ -1.84
LIG3-206ENST00000586058 KMT2CQ8NEZ4 4911 aaKnown RBP3.58□□□□□ -1.84
LIG3-206ENST00000586058 RPS28P62857 69 aaKnown RBP3.57□□□□□ -1.84
LIG3-206ENST00000586058 WFDC13Q8IUB5 93 aa3.57□□□□□ -1.84
LIG3-206ENST00000586058 Q96NJ1 140 aa3.57□□□□□ -1.84
LIG3-206ENST00000586058 KRTAP9-8Q9BYQ0 159 aa3.57□□□□□ -1.84
LIG3-206ENST00000586058 hDV103S1A0JD37 113 aa3.56□□□□□ -1.84
LIG3-206ENST00000586058 NDUFS5O43920 106 aa3.56□□□□□ -1.84
LIG3-206ENST00000586058 C8orf17Q9NRJ1 99 aa3.56□□□□□ -1.84
LIG3-206ENST00000586058 MMP24-AS1A0A0U1RRL7 71 aa3.54□□□□□ -1.84
LIG3-206ENST00000586058 LINC00313P59037 77 aa3.54□□□□□ -1.84
LIG3-206ENST00000586058 SERP2Q8N6R1 65 aa3.54□□□□□ -1.84
LIG3-206ENST00000586058 TMEM254Q8TBM7 123 aa3.54□□□□□ -1.84
LIG3-206ENST00000586058 SRRM2Q9UQ35 2752 aaKnown RBP3.53□□□□□ -1.84
LIG3-206ENST00000586058 TRAV7A0A075B6U4 112 aa3.53□□□□□ -1.84
LIG3-206ENST00000586058 FP248Q71RG6 208 aaPredicted RBP3.53□□□□□ -1.84
LIG3-206ENST00000586058 Q75L30 129 aa3.53□□□□□ -1.84
LIG3-206ENST00000586058 MRPL34Q9BQ48 92 aaKnown RBP3.53□□□□□ -1.84
LIG3-206ENST00000586058 TP53AIP1Q9HCN2 124 aa3.53□□□□□ -1.84
LIG3-206ENST00000586058 UQCRQO14949 82 aa3.52□□□□□ -1.85
LIG3-206ENST00000586058 COX7CP15954 63 aa3.52□□□□□ -1.85
LIG3-206ENST00000586058 MP68P56378 58 aa3.52□□□□□ -1.85
LIG3-206ENST00000586058 KRTAP10-8P60410 259 aa3.52□□□□□ -1.85
LIG3-206ENST00000586058 LRP1BQ9NZR2 4599 aa3.51□□□□□ -1.85
LIG3-206ENST00000586058 FAM236DA0A1B0GTK5 79 aa3.51□□□□□ -1.85
LIG3-206ENST00000586058 FAM236CP0DP71 79 aa3.51□□□□□ -1.85
LIG3-206ENST00000586058 VPS13BQ7Z7G8 4022 aa3.51□□□□□ -1.85
LIG3-206ENST00000586058 TRAV22A0A0B4J277 110 aa3.5□□□□□ -1.85
LIG3-206ENST00000586058 KRTAP29-1A8MX34 341 aaPredicted RBP3.5□□□□□ -1.85
LIG3-206ENST00000586058 RETNLBQ9BQ08 111 aa3.5□□□□□ -1.85
LIG3-206ENST00000586058 RYR3Q15413 4870 aa3.49□□□□□ -1.85
LIG3-206ENST00000586058 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
LIG3-206ENST00000586058 APOBP04114 4563 aaKnown RBP3.49□□□□□ -1.85
LIG3-206ENST00000586058 H3BPC8 53 aa3.48□□□□□ -1.85
LIG3-206ENST00000586058 OCR1Q9BZK8 76 aa3.48□□□□□ -1.85
LIG3-206ENST00000586058 DYNC1H1Q14204 4646 aaKnown RBP3.48□□□□□ -1.85
LIG3-206ENST00000586058 C9orf92A6NGG3 77 aa3.47□□□□□ -1.85
LIG3-206ENST00000586058 H0Y9P7 68 aa3.47□□□□□ -1.85
LIG3-206ENST00000586058 PRR4Q16378 134 aa3.47□□□□□ -1.85
LIG3-206ENST00000586058 C20orf197Q8N268 126 aa3.47□□□□□ -1.85
LIG3-206ENST00000586058 PKHD1L1Q86WI1 4243 aa3.47□□□□□ -1.85
LIG3-206ENST00000586058 IGLV7-46A0A075B6I9 117 aa3.46□□□□□ -1.86
LIG3-206ENST00000586058 NDUFC1O43677 76 aa3.46□□□□□ -1.86
LIG3-206ENST00000586058 CCDC179H3BU77 68 aa3.45□□□□□ -1.86
LIG3-206ENST00000586058 MT1HL1P0DM35 61 aa3.45□□□□□ -1.86
LIG3-206ENST00000586058 KLKP1Q107X0 134 aa3.44□□□□□ -1.86
LIG3-206ENST00000586058 NOTCH2NLQ7Z3S9 236 aa3.44□□□□□ -1.86
LIG3-206ENST00000586058 Q8N9P0 234 aaPredicted RBP3.44□□□□□ -1.86
LIG3-206ENST00000586058 FLG2Q5D862 2391 aaPredicted RBP3.43□□□□□ -1.86
LIG3-206ENST00000586058 A0A0U1RQV1 116 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 LOC101927531A0A1B0GV80 90 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 C1orf64Q8NEQ6 169 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 LINC00208Q96KT6 92 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 SNURFQ9Y675 71 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 HSPG2P98160 4391 aa3.43□□□□□ -1.86
LIG3-206ENST00000586058 KRTAP16-1A8MUX0 517 aa3.42□□□□□ -1.86
LIG3-206ENST00000586058 ATP5EP56381 51 aaPredicted RBP3.42□□□□□ -1.86
LIG3-206ENST00000586058 TMEM258P61165 79 aa3.41□□□□□ -1.86
LIG3-206ENST00000586058 TPRXLQ17RH7 258 aa3.41□□□□□ -1.86
LIG3-206ENST00000586058 ATP11AUNQ6ZP68 121 aa3.41□□□□□ -1.86
LIG3-206ENST00000586058 C20orf166-AS1Q96NR2 134 aa3.41□□□□□ -1.86
LIG3-206ENST00000586058 A8MUU9 505 aa3.4□□□□□ -1.87
LIG3-206ENST00000586058 ZCCHC13Q8WW36 166 aaKnown RBP3.4□□□□□ -1.87
LIG3-206ENST00000586058 RYR1P21817 5038 aa3.4□□□□□ -1.87
LIG3-206ENST00000586058 EPPK1P58107 5090 aaKnown RBP3.39□□□□□ -1.87
LIG3-206ENST00000586058 KRTAP13-3Q3SY46 172 aa3.39□□□□□ -1.87
LIG3-206ENST00000586058 C7orf65Q6ZTY9 151 aa3.39□□□□□ -1.87
LIG3-206ENST00000586058 IGKV2D-30A0A075B6S6 120 aa3.38□□□□□ -1.87
LIG3-206ENST00000586058 IGKV2-30P06310 120 aa3.38□□□□□ -1.87
LIG3-206ENST00000586058 Q5W150 140 aa3.38□□□□□ -1.87
LIG3-206ENST00000586058 RBM12B-AS1Q9P1G2 102 aa3.38□□□□□ -1.87
LIG3-206ENST00000586058 KIAA1109Q2LD37 5005 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms