RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 HRCT1Q6UXD1 115 aa5.96□□□□□ -1.46
SS18-207ENST00000577636 ANAPC13Q9BS18 74 aa5.96□□□□□ -1.46
SS18-207ENST00000577636 A0A087WVE0 104 aa5.94□□□□□ -1.46
SS18-207ENST00000577636 ATOX1O00244 68 aa5.94□□□□□ -1.46
SS18-207ENST00000577636 KRTAP9-6A0A140TA67 174 aa5.93□□□□□ -1.46
SS18-207ENST00000577636 MUC2Q02817 5179 aa5.92□□□□□ -1.46
SS18-207ENST00000577636 NDUFB1O75438 58 aa5.92□□□□□ -1.46
SS18-207ENST00000577636 TYMSOSQ8TAI1 123 aa5.92□□□□□ -1.46
SS18-207ENST00000577636 A0A087X002 238 aa5.91□□□□□ -1.46
SS18-207ENST00000577636 KRTAP1-4P0C5Y4 121 aa5.91□□□□□ -1.46
SS18-207ENST00000577636 SMIM20Q8N5G0 67 aa5.91□□□□□ -1.46
SS18-207ENST00000577636 LIMD2Q9BT23 127 aa5.91□□□□□ -1.46
SS18-207ENST00000577636 LOC100996750A0A140TA64 210 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 IGKV4-1P06312 121 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 DEFB116Q30KQ4 102 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 Q8N9L7 120 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 KRTAP4-6Q9BYQ5 205 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 LINC00472Q9H8W2 130 aa5.9□□□□□ -1.46
SS18-207ENST00000577636 DSCR10P59022 87 aa5.89□□□□□ -1.47
SS18-207ENST00000577636 KRTAP13-2Q52LG2 175 aa5.89□□□□□ -1.47
SS18-207ENST00000577636 A8MWP4 228 aa5.88□□□□□ -1.47
SS18-207ENST00000577636 K7EQZ3 153 aa5.88□□□□□ -1.47
SS18-207ENST00000577636 SPAG11AQ6PDA7 123 aa5.87□□□□□ -1.47
SS18-207ENST00000577636 SPINK1P00995 79 aa5.86□□□□□ -1.47
SS18-207ENST00000577636 HCG22E2RYF7 251 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 ASB16-AS1Q495Z4 193 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 Q5XG85 94 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 PRR15Q8IV56 129 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 SERP2Q8N6R1 65 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 LINC00304Q8N9R0 145 aa5.85□□□□□ -1.47
SS18-207ENST00000577636 TRAV7A0A075B6U4 112 aa5.82□□□□□ -1.48
SS18-207ENST00000577636 RPS29P62273 56 aaKnown RBP5.82□□□□□ -1.48
SS18-207ENST00000577636 Q96NJ1 140 aa5.82□□□□□ -1.48
SS18-207ENST00000577636 FAT4Q6V0I7 4981 aa5.82□□□□□ -1.48
SS18-207ENST00000577636 A0A1B0GVX0 72 aa5.81□□□□□ -1.48
SS18-207ENST00000577636 UQCRQO14949 82 aa5.81□□□□□ -1.48
SS18-207ENST00000577636 COX7CP15954 63 aa5.81□□□□□ -1.48
SS18-207ENST00000577636 CASC2Q6XLA1 102 aa5.81□□□□□ -1.48
SS18-207ENST00000577636 IGHV6-1A0A0B4J1U7 121 aa5.8□□□□□ -1.48
SS18-207ENST00000577636 WFDC13Q8IUB5 93 aa5.8□□□□□ -1.48
SS18-207ENST00000577636 hDV103S1A0JD37 113 aa5.77□□□□□ -1.49
SS18-207ENST00000577636 C8orf87E5RJ46 101 aa5.77□□□□□ -1.49
SS18-207ENST00000577636 C1orf195Q5TG92 126 aa5.77□□□□□ -1.49
SS18-207ENST00000577636 RETNLBQ9BQ08 111 aa5.77□□□□□ -1.49
SS18-207ENST00000577636 C8orf17Q9NRJ1 99 aa5.77□□□□□ -1.49
SS18-207ENST00000577636 MMP24-AS1A0A0U1RRL7 71 aa5.75□□□□□ -1.49
SS18-207ENST00000577636 CCDC179H3BU77 68 aa5.75□□□□□ -1.49
SS18-207ENST00000577636 OCR1Q9BZK8 76 aa5.74□□□□□ -1.49
SS18-207ENST00000577636 LINC00313P59037 77 aa5.73□□□□□ -1.49
SS18-207ENST00000577636 TMEM254Q8TBM7 123 aa5.73□□□□□ -1.49
SS18-207ENST00000577636 TP53AIP1Q9HCN2 124 aa5.73□□□□□ -1.49
SS18-207ENST00000577636 NDUFS5O43920 106 aa5.72□□□□□ -1.49
SS18-207ENST00000577636 C5orf47Q569G3 176 aa5.72□□□□□ -1.49
SS18-207ENST00000577636 MP68P56378 58 aa5.71□□□□□ -1.5
SS18-207ENST00000577636 C20orf197Q8N268 126 aa5.71□□□□□ -1.5
SS18-207ENST00000577636 MRPL34Q9BQ48 92 aaKnown RBP5.71□□□□□ -1.5
SS18-207ENST00000577636 IGLV7-46A0A075B6I9 117 aa5.7□□□□□ -1.5
SS18-207ENST00000577636 MUC17Q685J3 4493 aa5.68□□□□□ -1.5
SS18-207ENST00000577636 NDUFC1O43677 76 aa5.67□□□□□ -1.5
SS18-207ENST00000577636 H3BPC8 53 aa5.66□□□□□ -1.5
SS18-207ENST00000577636 KLKP1Q107X0 134 aa5.66□□□□□ -1.5
SS18-207ENST00000577636 TPRXLQ17RH7 258 aa5.66□□□□□ -1.5
SS18-207ENST00000577636 XP32Q5T750 250 aa5.66□□□□□ -1.5
SS18-207ENST00000577636 TRAV22A0A0B4J277 110 aa5.65□□□□□ -1.5
SS18-207ENST00000577636 H0Y9P7 68 aa5.65□□□□□ -1.5
SS18-207ENST00000577636 CRCT1Q9UGL9 99 aa5.65□□□□□ -1.5
SS18-207ENST00000577636 NOTCH2NLQ7Z3S9 236 aa5.64□□□□□ -1.51
SS18-207ENST00000577636 SNURFQ9Y675 71 aa5.64□□□□□ -1.51
SS18-207ENST00000577636 TMEM258P61165 79 aa5.61□□□□□ -1.51
SS18-207ENST00000577636 FP248Q71RG6 208 aaPredicted RBP5.61□□□□□ -1.51
SS18-207ENST00000577636 LINC00208Q96KT6 92 aa5.61□□□□□ -1.51
SS18-207ENST00000577636 Q8N9P0 234 aaPredicted RBP5.6□□□□□ -1.51
SS18-207ENST00000577636 C1orf64Q8NEQ6 169 aa5.59□□□□□ -1.51
SS18-207ENST00000577636 FSIP2Q5CZC0 6907 aa5.58□□□□□ -1.52
SS18-207ENST00000577636 LOC101927531A0A1B0GV80 90 aa5.57□□□□□ -1.52
SS18-207ENST00000577636 KRTAP16-1A8MUX0 517 aa5.57□□□□□ -1.52
SS18-207ENST00000577636 KRTAP4-1Q9BYQ7 146 aa5.57□□□□□ -1.52
SS18-207ENST00000577636 C9orf92A6NGG3 77 aa5.56□□□□□ -1.52
SS18-207ENST00000577636 H7BZZ5 65 aa5.56□□□□□ -1.52
SS18-207ENST00000577636 ATP5EP56381 51 aaPredicted RBP5.56□□□□□ -1.52
SS18-207ENST00000577636 ZCCHC13Q8WW36 166 aaKnown RBP5.55□□□□□ -1.52
SS18-207ENST00000577636 FAM236DA0A1B0GTK5 79 aa5.54□□□□□ -1.52
SS18-207ENST00000577636 FAM236CP0DP71 79 aa5.54□□□□□ -1.52
SS18-207ENST00000577636 SEC61BP60468 96 aaKnown RBP5.54□□□□□ -1.52
SS18-207ENST00000577636 CYSTM1Q9H1C7 97 aa5.54□□□□□ -1.52
SS18-207ENST00000577636 KRTAP13-3Q3SY46 172 aa5.53□□□□□ -1.52
SS18-207ENST00000577636 A8MUU9 505 aa5.5□□□□□ -1.53
SS18-207ENST00000577636 Q5W150 140 aa5.5□□□□□ -1.53
SS18-207ENST00000577636 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
SS18-207ENST00000577636 SPANXA2-OT1Q8N9U9 137 aa5.48□□□□□ -1.53
SS18-207ENST00000577636 PCOTHQ58A44 107 aa5.47□□□□□ -1.53
SS18-207ENST00000577636 IGKV2-30P06310 120 aa5.46□□□□□ -1.54
SS18-207ENST00000577636 ATP11AUNQ6ZP68 121 aa5.46□□□□□ -1.54
SS18-207ENST00000577636 Q75L30 129 aa5.46□□□□□ -1.54
SS18-207ENST00000577636 CYP4F30PQ9H0H9 118 aa5.46□□□□□ -1.54
SS18-207ENST00000577636 IGKV2D-30A0A075B6S6 120 aa5.45□□□□□ -1.54
SS18-207ENST00000577636 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
SS18-207ENST00000577636 KRTAP4-8Q9BYQ9 185 aa5.44□□□□□ -1.54
SS18-207ENST00000577636 SERP1Q9Y6X1 66 aa5.44□□□□□ -1.54
SS18-207ENST00000577636 RPS28P62857 69 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms