RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CXCL6P80162 114 aa3.65□□□□□ -1.83
VPS39-209ENST00000568029 NREPQ16612 68 aa3.65□□□□□ -1.83
VPS39-209ENST00000568029 A0A087WTM6 91 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 H0Y9J4 135 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 BCE1O60756 84 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 C1orf137Q5JT78 98 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 ST20-AS1Q8NBB2 130 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 MUC2Q02817 5179 aa3.64□□□□□ -1.83
VPS39-209ENST00000568029 CCDC179H3BU77 68 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 UQCRQO14949 82 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 ERC2-IT1O76042 136 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 CHTF8P0CG12 524 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 UBE2AP49459 152 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 KRTAP10-1P60331 282 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 PHF5AQ7RTV0 110 aaKnown RBP3.63□□□□□ -1.83
VPS39-209ENST00000568029 C3orf22Q8N5N4 141 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 HIGD2AQ9BW72 106 aa3.63□□□□□ -1.83
VPS39-209ENST00000568029 COX7CP15954 63 aa3.62□□□□□ -1.83
VPS39-209ENST00000568029 PRLHP81277 87 aa3.62□□□□□ -1.83
VPS39-209ENST00000568029 SMIM20Q8N5G0 67 aa3.62□□□□□ -1.83
VPS39-209ENST00000568029 SERP2Q8N6R1 65 aa3.62□□□□□ -1.83
VPS39-209ENST00000568029 A0A087WVE0 104 aa3.61□□□□□ -1.83
VPS39-209ENST00000568029 LPAP08519 4548 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 IGLV8-61A0A075B6I0 122 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 A0A1W2PNM2 257 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 BPY2O14599 106 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 SPRR1BP22528 89 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 C9orf153Q5TBE3 101 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 SPACA4Q8TDM5 124 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 SPRR4Q96PI1 79 aa3.6□□□□□ -1.83
VPS39-209ENST00000568029 CRYGAP11844 174 aa3.59□□□□□ -1.83
VPS39-209ENST00000568029 DSCR10P59022 87 aa3.59□□□□□ -1.83
VPS39-209ENST00000568029 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
VPS39-209ENST00000568029 FSIP2Q5CZC0 6907 aa3.58□□□□□ -1.84
VPS39-209ENST00000568029 TRAV7A0A075B6U4 112 aa3.58□□□□□ -1.84
VPS39-209ENST00000568029 SCXQ7RTU7 201 aa3.58□□□□□ -1.84
VPS39-209ENST00000568029 PLAC8Q9NZF1 115 aa3.58□□□□□ -1.84
VPS39-209ENST00000568029 ZNF706Q9Y5V0 76 aaPredicted RBP3.58□□□□□ -1.84
VPS39-209ENST00000568029 PANO1I0J062 215 aa3.57□□□□□ -1.84
VPS39-209ENST00000568029 IGFL1Q6UW32 110 aa3.57□□□□□ -1.84
VPS39-209ENST00000568029 KRTAP11-1Q8IUC1 163 aa3.57□□□□□ -1.84
VPS39-209ENST00000568029 KRTAP13-1Q8IUC0 172 aa3.56□□□□□ -1.84
VPS39-209ENST00000568029 IGKV4-1P06312 121 aa3.55□□□□□ -1.84
VPS39-209ENST00000568029 KRTAP10-4P60372 401 aaPredicted RBP3.55□□□□□ -1.84
VPS39-209ENST00000568029 KRTAP10-12P60413 245 aa3.55□□□□□ -1.84
VPS39-209ENST00000568029 RPL37AP61513 92 aaKnown RBP3.55□□□□□ -1.84
VPS39-209ENST00000568029 ZNF861PO60384 105 aa3.54□□□□□ -1.84
VPS39-209ENST00000568029 SS18L2Q9UHA2 77 aa3.54□□□□□ -1.84
VPS39-209ENST00000568029 PSORS1C2Q9UIG4 136 aa3.54□□□□□ -1.84
VPS39-209ENST00000568029 A0A087WSZ3 146 aa3.53□□□□□ -1.84
VPS39-209ENST00000568029 LINC00483Q53H64 154 aa3.53□□□□□ -1.84
VPS39-209ENST00000568029 Q8N9L7 120 aa3.53□□□□□ -1.84
VPS39-209ENST00000568029 J3KT08 172 aa3.52□□□□□ -1.85
VPS39-209ENST00000568029 MT1HL1P0DM35 61 aa3.52□□□□□ -1.85
VPS39-209ENST00000568029 TMEM258P61165 79 aa3.52□□□□□ -1.85
VPS39-209ENST00000568029 C20orf197Q8N268 126 aa3.52□□□□□ -1.85
VPS39-209ENST00000568029 TYMSOSQ8TAI1 123 aa3.52□□□□□ -1.85
VPS39-209ENST00000568029 A0A0G2JQZ4 141 aa3.51□□□□□ -1.85
VPS39-209ENST00000568029 NDUFC1O43677 76 aa3.51□□□□□ -1.85
VPS39-209ENST00000568029 IGLV7-43P04211 117 aa3.51□□□□□ -1.85
VPS39-209ENST00000568029 NDUFB1O75438 58 aa3.5□□□□□ -1.85
VPS39-209ENST00000568029 HCG22E2RYF7 251 aa3.49□□□□□ -1.85
VPS39-209ENST00000568029 K7EQZ3 153 aa3.49□□□□□ -1.85
VPS39-209ENST00000568029 KLKP1Q107X0 134 aa3.49□□□□□ -1.85
VPS39-209ENST00000568029 LINC00472Q9H8W2 130 aa3.49□□□□□ -1.85
VPS39-209ENST00000568029 A8MWP4 228 aa3.48□□□□□ -1.85
VPS39-209ENST00000568029 OXTP01178 125 aa3.48□□□□□ -1.85
VPS39-209ENST00000568029 RPS28P62857 69 aaKnown RBP3.48□□□□□ -1.85
VPS39-209ENST00000568029 DEFB116Q30KQ4 102 aa3.48□□□□□ -1.85
VPS39-209ENST00000568029 PRR15Q8IV56 129 aa3.48□□□□□ -1.85
VPS39-209ENST00000568029 CIRBP-AS1Q8TBR5 109 aa3.48□□□□□ -1.85
VPS39-209ENST00000568029 MOBPQ13875 183 aa3.47□□□□□ -1.85
VPS39-209ENST00000568029 C5orf47Q569G3 176 aa3.47□□□□□ -1.85
VPS39-209ENST00000568029 SSBP3-AS1Q7Z2R9 100 aa3.47□□□□□ -1.85
VPS39-209ENST00000568029 TMEM254Q8TBM7 123 aa3.47□□□□□ -1.85
VPS39-209ENST00000568029 SNURFQ9Y675 71 aa3.47□□□□□ -1.85
VPS39-209ENST00000568029 ATP5EP56381 51 aaPredicted RBP3.46□□□□□ -1.86
VPS39-209ENST00000568029 CD164Q04900 197 aa3.46□□□□□ -1.86
VPS39-209ENST00000568029 CASC2Q6XLA1 102 aa3.46□□□□□ -1.86
VPS39-209ENST00000568029 Q6ZSA8 131 aa3.46□□□□□ -1.86
VPS39-209ENST00000568029 A0A0U1RQV1 116 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 FAM236DA0A1B0GTK5 79 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 H7BZZ5 65 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 FAM236CP0DP71 79 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 HRCT1Q6UXD1 115 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 WFDC13Q8IUB5 93 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 CYSTM1Q9H1C7 97 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 ANAPC11Q9NYG5 84 aa3.45□□□□□ -1.86
VPS39-209ENST00000568029 MP68P56378 58 aa3.44□□□□□ -1.86
VPS39-209ENST00000568029 FAM229BQ4G0N7 80 aa3.44□□□□□ -1.86
VPS39-209ENST00000568029 H3BPC8 53 aa3.43□□□□□ -1.86
VPS39-209ENST00000568029 KRTAP10-5P60370 271 aa3.43□□□□□ -1.86
VPS39-209ENST00000568029 A0A1B0GVX0 72 aa3.42□□□□□ -1.86
VPS39-209ENST00000568029 hDV103S1A0JD37 113 aa3.42□□□□□ -1.86
VPS39-209ENST00000568029 Q96NJ1 140 aa3.42□□□□□ -1.86
VPS39-209ENST00000568029 TP53AIP1Q9HCN2 124 aa3.42□□□□□ -1.86
VPS39-209ENST00000568029 SERP1Q9Y6X1 66 aa3.42□□□□□ -1.86
VPS39-209ENST00000568029 PRR4Q16378 134 aa3.41□□□□□ -1.86
VPS39-209ENST00000568029 ASB16-AS1Q495Z4 193 aa3.41□□□□□ -1.86
VPS39-209ENST00000568029 C8orf17Q9NRJ1 99 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms