RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 A0A1B0GV72 72 aa8.8□□□□□ -1
CLK3-210ENST00000563112 ACYP1P07311 99 aa8.8□□□□□ -1
CLK3-210ENST00000563112 SCGB1A1P11684 91 aa8.8□□□□□ -1
CLK3-210ENST00000563112 C20orf166-AS1Q96NR2 134 aa8.8□□□□□ -1
CLK3-210ENST00000563112 A8MUU9 505 aa8.78□□□□□ -1
CLK3-210ENST00000563112 FAM240AA0A1B0GVK7 77 aa8.77□□□□□ -1.01
CLK3-210ENST00000563112 DSCR10P59022 87 aa8.77□□□□□ -1.01
CLK3-210ENST00000563112 IGKV4-1P06312 121 aa8.76□□□□□ -1.01
CLK3-210ENST00000563112 FLGP20930 4061 aaPredicted RBP8.76□□□□□ -1.01
CLK3-210ENST00000563112 CCKP06307 115 aa8.75□□□□□ -1.01
CLK3-210ENST00000563112 BAALC-AS2P0C853 105 aa8.75□□□□□ -1.01
CLK3-210ENST00000563112 KRTAP10-6P60371 365 aaPredicted RBP8.75□□□□□ -1.01
CLK3-210ENST00000563112 PCP4P48539 62 aa8.74□□□□□ -1.01
CLK3-210ENST00000563112 LINC00313P59037 77 aa8.74□□□□□ -1.01
CLK3-210ENST00000563112 C21orf62-AS1Q17RA5 79 aa8.74□□□□□ -1.01
CLK3-210ENST00000563112 LORP23490 312 aaPredicted RBP8.73□□□□□ -1.01
CLK3-210ENST00000563112 RBM3P98179 157 aaKnown RBP8.7□□□□□ -1.02
CLK3-210ENST00000563112 FSIP2Q5CZC0 6907 aa8.69□□□□□ -1.02
CLK3-210ENST00000563112 JMJD7-PLA2G4BH0Y9G9 81 aa8.69□□□□□ -1.02
CLK3-210ENST00000563112 DEFB116Q30KQ4 102 aa8.69□□□□□ -1.02
CLK3-210ENST00000563112 DSCR8Q96T75 97 aa8.69□□□□□ -1.02
CLK3-210ENST00000563112 LINC00472Q9H8W2 130 aa8.69□□□□□ -1.02
CLK3-210ENST00000563112 IGHV6-1A0A0B4J1U7 121 aa8.65□□□□□ -1.02
CLK3-210ENST00000563112 KRTAP16-1A8MUX0 517 aa8.64□□□□□ -1.03
CLK3-210ENST00000563112 CRCT1Q9UGL9 99 aa8.64□□□□□ -1.03
CLK3-210ENST00000563112 PDE6GP18545 87 aa8.62□□□□□ -1.03
CLK3-210ENST00000563112 NOTCH2NLQ7Z3S9 236 aa8.62□□□□□ -1.03
CLK3-210ENST00000563112 C8orf87E5RJ46 101 aa8.6□□□□□ -1.03
CLK3-210ENST00000563112 A0A1B0GVX0 72 aa8.59□□□□□ -1.03
CLK3-210ENST00000563112 IMUPQ9GZP8 106 aa8.59□□□□□ -1.03
CLK3-210ENST00000563112 J3KT08 172 aa8.58□□□□□ -1.04
CLK3-210ENST00000563112 LINC00643Q86TS7 51 aa8.58□□□□□ -1.04
CLK3-210ENST00000563112 FAM236DA0A1B0GTK5 79 aa8.55□□□□□ -1.04
CLK3-210ENST00000563112 FAM236CP0DP71 79 aa8.55□□□□□ -1.04
CLK3-210ENST00000563112 Q6ZQT0 140 aa8.55□□□□□ -1.04
CLK3-210ENST00000563112 MT-ATP8P03928 68 aa8.54□□□□□ -1.04
CLK3-210ENST00000563112 NDUFB1O75438 58 aa8.53□□□□□ -1.04
CLK3-210ENST00000563112 RBM12B-AS1Q9P1G2 102 aa8.53□□□□□ -1.04
CLK3-210ENST00000563112 A0A1B0GW54 56 aa8.52□□□□□ -1.05
CLK3-210ENST00000563112 ATP5EP2Q5VTU8 51 aa8.51□□□□□ -1.05
CLK3-210ENST00000563112 C14orf132Q9NPU4 83 aa8.51□□□□□ -1.05
CLK3-210ENST00000563112 LOC110117498A0A087WWA1 95 aa8.5□□□□□ -1.05
CLK3-210ENST00000563112 HRES1P13985 223 aa8.48□□□□□ -1.05
CLK3-210ENST00000563112 UBL5Q9BZL1 73 aa8.48□□□□□ -1.05
CLK3-210ENST00000563112 ZCCHC13Q8WW36 166 aaKnown RBP8.46□□□□□ -1.06
CLK3-210ENST00000563112 MPLKIPQ8TAP9 179 aa8.45□□□□□ -1.06
CLK3-210ENST00000563112 ANAPC13Q9BS18 74 aa8.45□□□□□ -1.06
CLK3-210ENST00000563112 A8MWP4 228 aa8.44□□□□□ -1.06
CLK3-210ENST00000563112 Q8N9P0 234 aaPredicted RBP8.42□□□□□ -1.06
CLK3-210ENST00000563112 C8orf17Q9NRJ1 99 aa8.42□□□□□ -1.06
CLK3-210ENST00000563112 NREPQ16612 68 aa8.41□□□□□ -1.06
CLK3-210ENST00000563112 KRTAP9-8Q9BYQ0 159 aa8.41□□□□□ -1.06
CLK3-210ENST00000563112 IGKV3D-7A0A0C4DH55 119 aa8.39□□□□□ -1.07
CLK3-210ENST00000563112 SPINK7P58062 85 aa8.39□□□□□ -1.07
CLK3-210ENST00000563112 LINC00846Q9NV44 126 aa8.38□□□□□ -1.07
CLK3-210ENST00000563112 Q6ZVQ6 151 aa8.36□□□□□ -1.07
CLK3-210ENST00000563112 ATOX1O00244 68 aa8.35□□□□□ -1.07
CLK3-210ENST00000563112 PRR15Q8IV56 129 aa8.35□□□□□ -1.07
CLK3-210ENST00000563112 FAM236AA0A1B0GUQ0 79 aa8.32□□□□□ -1.08
CLK3-210ENST00000563112 FAM236BA0A1B0GV22 79 aa8.32□□□□□ -1.08
CLK3-210ENST00000563112 CXCL6P80162 114 aa8.32□□□□□ -1.08
CLK3-210ENST00000563112 MT2AP02795 61 aa8.3□□□□□ -1.08
CLK3-210ENST00000563112 TMEM254Q8TBM7 123 aa8.3□□□□□ -1.08
CLK3-210ENST00000563112 MRPL34Q9BQ48 92 aaKnown RBP8.29□□□□□ -1.08
CLK3-210ENST00000563112 HIST1H4AP62805 103 aaKnown RBP8.28□□□□□ -1.08
CLK3-210ENST00000563112 SMIM20Q8N5G0 67 aa8.28□□□□□ -1.08
CLK3-210ENST00000563112 MMP24-AS1A0A0U1RRL7 71 aa8.27□□□□□ -1.09
CLK3-210ENST00000563112 WFDC13Q8IUB5 93 aa8.27□□□□□ -1.09
CLK3-210ENST00000563112 USH2AO75445 5202 aa8.26□□□□□ -1.09
CLK3-210ENST00000563112 hDV103S1A0JD37 113 aa8.25□□□□□ -1.09
CLK3-210ENST00000563112 KRTAP10-10P60014 251 aa8.25□□□□□ -1.09
CLK3-210ENST00000563112 K7EQZ3 153 aa8.24□□□□□ -1.09
CLK3-210ENST00000563112 BPY2O14599 106 aa8.24□□□□□ -1.09
CLK3-210ENST00000563112 UQCRQO14949 82 aa8.24□□□□□ -1.09
CLK3-210ENST00000563112 NDUFS5O43920 106 aa8.24□□□□□ -1.09
CLK3-210ENST00000563112 MT1FP04733 61 aa8.23□□□□□ -1.09
CLK3-210ENST00000563112 SSPOA2VEC9 5147 aa8.2□□□□□ -1.1
CLK3-210ENST00000563112 COX7CP15954 63 aa8.19□□□□□ -1.1
CLK3-210ENST00000563112 SERP2Q8N6R1 65 aa8.18□□□□□ -1.1
CLK3-210ENST00000563112 KRTAP9-3Q9BYQ3 159 aa8.15□□□□□ -1.1
CLK3-210ENST00000563112 CASC2Q6XLA1 102 aa8.13□□□□□ -1.11
CLK3-210ENST00000563112 IGKV2D-30A0A075B6S6 120 aa8.12□□□□□ -1.11
CLK3-210ENST00000563112 IGKV2-30P06310 120 aa8.12□□□□□ -1.11
CLK3-210ENST00000563112 TRAV7A0A075B6U4 112 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 A0A087WVE0 104 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 CCDC179H3BU77 68 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 LCE2BO14633 110 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 H1FX-AS1Q4G0G2 97 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 Q8N9L7 120 aa8.11□□□□□ -1.11
CLK3-210ENST00000563112 C7orf65Q6ZTY9 151 aa8.1□□□□□ -1.11
CLK3-210ENST00000563112 HCG22E2RYF7 251 aa8.08□□□□□ -1.12
CLK3-210ENST00000563112 Q5W150 140 aa8.08□□□□□ -1.12
CLK3-210ENST00000563112 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.02□□□□□ -1.13
CLK3-210ENST00000563112 NDUFC1O43677 76 aa8.02□□□□□ -1.13
CLK3-210ENST00000563112 KRTAP19-1Q8IUB9 90 aa8.02□□□□□ -1.13
CLK3-210ENST00000563112 TMEM258P61165 79 aa8.01□□□□□ -1.13
CLK3-210ENST00000563112 FCGBPQ9Y6R7 5405 aaPredicted RBP8□□□□□ -1.13
CLK3-210ENST00000563112 C4orf26Q17RF5 130 aa7.97□□□□□ -1.13
CLK3-210ENST00000563112 KRTAP9-7A8MTY7 169 aa7.95□□□□□ -1.14
CLK3-210ENST00000563112 KLKP1Q107X0 134 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms