RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DSCR8Q96T75 97 aa5.11□□□□□ -1.59
LDLR-214ENST00000560628 RBM12B-AS1Q9P1G2 102 aa5.11□□□□□ -1.59
LDLR-214ENST00000560628 MPLKIPQ8TAP9 179 aa5.1□□□□□ -1.59
LDLR-214ENST00000560628 C8orf87E5RJ46 101 aa5.09□□□□□ -1.59
LDLR-214ENST00000560628 C9JAW5 83 aa5.08□□□□□ -1.6
LDLR-214ENST00000560628 MT2AP02795 61 aa5.08□□□□□ -1.6
LDLR-214ENST00000560628 Q6ZQT0 140 aa5.06□□□□□ -1.6
LDLR-214ENST00000560628 NAA38Q9BRA0 125 aaKnown RBP5.06□□□□□ -1.6
LDLR-214ENST00000560628 J3KT08 172 aa5.05□□□□□ -1.6
LDLR-214ENST00000560628 MT1FP04733 61 aa5.05□□□□□ -1.6
LDLR-214ENST00000560628 ZCCHC13Q8WW36 166 aaKnown RBP5.05□□□□□ -1.6
LDLR-214ENST00000560628 SPINK7P58062 85 aa5.04□□□□□ -1.6
LDLR-214ENST00000560628 KRTAP10-10P60014 251 aa5.04□□□□□ -1.6
LDLR-214ENST00000560628 NDUFB1O75438 58 aa5.03□□□□□ -1.6
LDLR-214ENST00000560628 ATXN8Q156A1 80 aa5.02□□□□□ -1.61
LDLR-214ENST00000560628 USH2AO75445 5202 aa5.02□□□□□ -1.61
LDLR-214ENST00000560628 LCE2BO14633 110 aa5.01□□□□□ -1.61
LDLR-214ENST00000560628 LYRM7Q5U5X0 104 aa5.01□□□□□ -1.61
LDLR-214ENST00000560628 MTURNQ8N3F0 131 aa5.01□□□□□ -1.61
LDLR-214ENST00000560628 Q8N9P0 234 aaPredicted RBP5.01□□□□□ -1.61
LDLR-214ENST00000560628 C8orf17Q9NRJ1 99 aa5.01□□□□□ -1.61
LDLR-214ENST00000560628 A8MWP4 228 aa5□□□□□ -1.61
LDLR-214ENST00000560628 KRTAP9-1A8MXZ3 250 aaPredicted RBP5□□□□□ -1.61
LDLR-214ENST00000560628 JMJD7-PLA2G4BH0Y9G9 81 aa5□□□□□ -1.61
LDLR-214ENST00000560628 M0R143 59 aa5□□□□□ -1.61
LDLR-214ENST00000560628 PCP4P48539 62 aa5□□□□□ -1.61
LDLR-214ENST00000560628 KRTAP9-3Q9BYQ3 159 aa5□□□□□ -1.61
LDLR-214ENST00000560628 LOC110117498A0A087WWA1 95 aa4.99□□□□□ -1.61
LDLR-214ENST00000560628 IGKV3D-7A0A0C4DH55 119 aa4.99□□□□□ -1.61
LDLR-214ENST00000560628 C14orf132Q9NPU4 83 aa4.99□□□□□ -1.61
LDLR-214ENST00000560628 SSPOA2VEC9 5147 aa4.97□□□□□ -1.61
LDLR-214ENST00000560628 KRTAP9-7A8MTY7 169 aa4.97□□□□□ -1.61
LDLR-214ENST00000560628 Q6ZVQ6 151 aa4.97□□□□□ -1.61
LDLR-214ENST00000560628 A0A1B0GW54 56 aa4.96□□□□□ -1.62
LDLR-214ENST00000560628 PDE6GP18545 87 aa4.96□□□□□ -1.62
LDLR-214ENST00000560628 NREPQ16612 68 aa4.96□□□□□ -1.62
LDLR-214ENST00000560628 WFDC13Q8IUB5 93 aa4.96□□□□□ -1.62
LDLR-214ENST00000560628 KRTAP19-1Q8IUB9 90 aa4.96□□□□□ -1.62
LDLR-214ENST00000560628 PRR15Q8IV56 129 aa4.95□□□□□ -1.62
LDLR-214ENST00000560628 BATFQ16520 125 aa4.93□□□□□ -1.62
LDLR-214ENST00000560628 FCGBPQ9Y6R7 5405 aaPredicted RBP4.92□□□□□ -1.62
LDLR-214ENST00000560628 MMP24-AS1A0A0U1RRL7 71 aa4.91□□□□□ -1.62
LDLR-214ENST00000560628 MRPL34Q9BQ48 92 aaKnown RBP4.91□□□□□ -1.62
LDLR-214ENST00000560628 NDUFS5O43920 106 aa4.9□□□□□ -1.63
LDLR-214ENST00000560628 TMEM254Q8TBM7 123 aa4.9□□□□□ -1.63
LDLR-214ENST00000560628 hDV103S1A0JD37 113 aa4.89□□□□□ -1.63
LDLR-214ENST00000560628 K7EQZ3 153 aa4.89□□□□□ -1.63
LDLR-214ENST00000560628 SMIM6P0DI80 62 aa4.88□□□□□ -1.63
LDLR-214ENST00000560628 LOC105371267A0A1B0GV96 52 aa4.86□□□□□ -1.63
LDLR-214ENST00000560628 C9orf118A6NHY6 69 aa4.86□□□□□ -1.63
LDLR-214ENST00000560628 TSTD3H0UI37 97 aa4.86□□□□□ -1.63
LDLR-214ENST00000560628 H1FX-AS1Q4G0G2 97 aa4.86□□□□□ -1.63
LDLR-214ENST00000560628 IGKV2D-30A0A075B6S6 120 aa4.85□□□□□ -1.63
LDLR-214ENST00000560628 H3BT86 120 aa4.85□□□□□ -1.63
LDLR-214ENST00000560628 BPY2O14599 106 aa4.85□□□□□ -1.63
LDLR-214ENST00000560628 IGKV2-30P06310 120 aa4.85□□□□□ -1.63
LDLR-214ENST00000560628 Q5W150 140 aa4.85□□□□□ -1.63
LDLR-214ENST00000560628 TAX1BP3O14907 124 aa4.84□□□□□ -1.63
LDLR-214ENST00000560628 A0A1W2PPM0 123 aa4.83□□□□□ -1.64
LDLR-214ENST00000560628 Q8N9L7 120 aa4.83□□□□□ -1.64
LDLR-214ENST00000560628 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
LDLR-214ENST00000560628 LINC00846Q9NV44 126 aa4.82□□□□□ -1.64
LDLR-214ENST00000560628 HCG22E2RYF7 251 aa4.8□□□□□ -1.64
LDLR-214ENST00000560628 CASC2Q6XLA1 102 aa4.8□□□□□ -1.64
LDLR-214ENST00000560628 C7orf65Q6ZTY9 151 aa4.8□□□□□ -1.64
LDLR-214ENST00000560628 C4orf26Q17RF5 130 aa4.78□□□□□ -1.64
LDLR-214ENST00000560628 SPCS1Q9Y6A9 102 aa4.77□□□□□ -1.65
LDLR-214ENST00000560628 SMCPP49901 116 aaPredicted RBP4.76□□□□□ -1.65
LDLR-214ENST00000560628 SYNE2Q8WXH0 6885 aaKnown RBP4.76□□□□□ -1.65
LDLR-214ENST00000560628 MACF1Q9UPN3 7388 aaKnown RBP4.75□□□□□ -1.65
LDLR-214ENST00000560628 CXCL6P80162 114 aa4.74□□□□□ -1.65
LDLR-214ENST00000560628 C5orf47Q569G3 176 aa4.72□□□□□ -1.65
LDLR-214ENST00000560628 PCP4L1A6NKN8 68 aa4.71□□□□□ -1.66
LDLR-214ENST00000560628 UBL5Q9BZL1 73 aa4.71□□□□□ -1.66
LDLR-214ENST00000560628 KRTAP3-1Q9BYR8 98 aa4.7□□□□□ -1.66
LDLR-214ENST00000560628 PRO0461Q9UI25 63 aa4.69□□□□□ -1.66
LDLR-214ENST00000560628 FAM236AA0A1B0GUQ0 79 aa4.67□□□□□ -1.66
LDLR-214ENST00000560628 FAM236BA0A1B0GV22 79 aa4.67□□□□□ -1.66
LDLR-214ENST00000560628 COL5A1-AS1Q5SY13 56 aa4.67□□□□□ -1.66
LDLR-214ENST00000560628 C1orf64Q8NEQ6 169 aa4.67□□□□□ -1.66
LDLR-214ENST00000560628 S4R3F8 94 aa4.67□□□□□ -1.66
LDLR-214ENST00000560628 K7EP34 96 aa4.65□□□□□ -1.67
LDLR-214ENST00000560628 CSAG1Q6PB30 78 aa4.65□□□□□ -1.67
LDLR-214ENST00000560628 KRTAP6-3Q3LI67 103 aa4.64□□□□□ -1.67
LDLR-214ENST00000560628 LCA10Q71F78 164 aa4.64□□□□□ -1.67
LDLR-214ENST00000560628 MT1BP07438 61 aa4.61□□□□□ -1.67
LDLR-214ENST00000560628 TP53AIP1Q9HCN2 124 aa4.61□□□□□ -1.67
LDLR-214ENST00000560628 A6NN06 94 aa4.6□□□□□ -1.67
LDLR-214ENST00000560628 SEC61GP60059 68 aa4.6□□□□□ -1.67
LDLR-214ENST00000560628 Q5VV11 94 aa4.59□□□□□ -1.67
LDLR-214ENST00000560628 ETDBQ3ZM63 59 aa4.58□□□□□ -1.68
LDLR-214ENST00000560628 GTF2H5Q6ZYL4 71 aa4.58□□□□□ -1.68
LDLR-214ENST00000560628 SPRR2GQ9BYE4 73 aa4.58□□□□□ -1.68
LDLR-214ENST00000560628 KRTAP19-8Q3LI54 63 aa4.57□□□□□ -1.68
LDLR-214ENST00000560628 KRTAP3-3Q9BYR6 98 aa4.57□□□□□ -1.68
LDLR-214ENST00000560628 CYP4F30PQ9H0H9 118 aa4.57□□□□□ -1.68
LDLR-214ENST00000560628 F8W1H4 67 aa4.56□□□□□ -1.68
LDLR-214ENST00000560628 A0A087WVE0 104 aa4.55□□□□□ -1.68
LDLR-214ENST00000560628 KLKP1Q107X0 134 aa4.55□□□□□ -1.68
LDLR-214ENST00000560628 KRTAP10-5P60370 271 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 194.8 ms