RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SIGMAR1Q99720 223 aa2.35□□□□□ -2.03
SNX1-205ENST00000559339 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
SNX1-205ENST00000559339 KRTAP9-4Q9BYQ2 154 aa2.35□□□□□ -2.03
SNX1-205ENST00000559339 KRTAP9-7A8MTY7 169 aa2.34□□□□□ -2.03
SNX1-205ENST00000559339 LINC00313P59037 77 aa2.34□□□□□ -2.03
SNX1-205ENST00000559339 NAA38Q9BRA0 125 aaKnown RBP2.34□□□□□ -2.03
SNX1-205ENST00000559339 LOC105371267A0A1B0GV96 52 aa2.33□□□□□ -2.04
SNX1-205ENST00000559339 A0A1B0GW54 56 aa2.33□□□□□ -2.04
SNX1-205ENST00000559339 KRTAP4-1Q9BYQ7 146 aa2.33□□□□□ -2.04
SNX1-205ENST00000559339 J3KT08 172 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 NDUFB1O75438 58 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 DEFB116Q30KQ4 102 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 COX6B2Q6YFQ2 88 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 C20orf166-AS1Q96NR2 134 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 LINC00472Q9H8W2 130 aa2.32□□□□□ -2.04
SNX1-205ENST00000559339 LOC110117498A0A087WWA1 95 aa2.31□□□□□ -2.04
SNX1-205ENST00000559339 IGHV6-1A0A0B4J1U7 121 aa2.31□□□□□ -2.04
SNX1-205ENST00000559339 DSCR10P59022 87 aa2.31□□□□□ -2.04
SNX1-205ENST00000559339 Q6ZQT0 140 aa2.31□□□□□ -2.04
SNX1-205ENST00000559339 C14orf132Q9NPU4 83 aa2.31□□□□□ -2.04
SNX1-205ENST00000559339 A0A1B0GVX0 72 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 A0A1W2PPM0 123 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 A8MUU9 505 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 C8orf87E5RJ46 101 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 H3BT86 120 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 M0R2T5 61 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 NREPQ16612 68 aa2.3□□□□□ -2.04
SNX1-205ENST00000559339 KRTAP4-8A0A0G2JLE6 195 aa2.29□□□□□ -2.04
SNX1-205ENST00000559339 TAX1BP3O14907 124 aa2.29□□□□□ -2.04
SNX1-205ENST00000559339 COL5A1-AS1Q5SY13 56 aa2.29□□□□□ -2.04
SNX1-205ENST00000559339 LCE1DQ5T752 114 aa2.29□□□□□ -2.04
SNX1-205ENST00000559339 A8MWP4 228 aa2.28□□□□□ -2.04
SNX1-205ENST00000559339 SPCS1Q9Y6A9 102 aa2.28□□□□□ -2.04
SNX1-205ENST00000559339 FAT4Q6V0I7 4981 aa2.28□□□□□ -2.04
SNX1-205ENST00000559339 MUC17Q685J3 4493 aa2.28□□□□□ -2.05
SNX1-205ENST00000559339 KRTAP16-1A8MUX0 517 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 MT1HP80294 61 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 KRTAP19-2Q3LHN2 52 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 NOTCH2NLQ7Z3S9 236 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 MTURNQ8N3F0 131 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 SVIPQ8NHG7 77 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 RBM12B-AS1Q9P1G2 102 aa2.27□□□□□ -2.05
SNX1-205ENST00000559339 BPY2O14599 106 aa2.26□□□□□ -2.05
SNX1-205ENST00000559339 Q6ZVQ6 151 aa2.26□□□□□ -2.05
SNX1-205ENST00000559339 PRR15Q8IV56 129 aa2.26□□□□□ -2.05
SNX1-205ENST00000559339 IGKV3D-7A0A0C4DH55 119 aa2.25□□□□□ -2.05
SNX1-205ENST00000559339 FAM236DA0A1B0GTK5 79 aa2.25□□□□□ -2.05
SNX1-205ENST00000559339 FAM236CP0DP71 79 aa2.25□□□□□ -2.05
SNX1-205ENST00000559339 GTF2H5Q6ZYL4 71 aa2.25□□□□□ -2.05
SNX1-205ENST00000559339 ZCCHC13Q8WW36 166 aaKnown RBP2.25□□□□□ -2.05
SNX1-205ENST00000559339 C8orf17Q9NRJ1 99 aa2.25□□□□□ -2.05
SNX1-205ENST00000559339 PCP4L1A6NKN8 68 aa2.24□□□□□ -2.05
SNX1-205ENST00000559339 K7EP34 96 aa2.24□□□□□ -2.05
SNX1-205ENST00000559339 Q8N9P0 234 aaPredicted RBP2.24□□□□□ -2.05
SNX1-205ENST00000559339 KRTAP9-3Q9BYQ3 159 aa2.24□□□□□ -2.05
SNX1-205ENST00000559339 UBL5Q9BZL1 73 aa2.24□□□□□ -2.05
SNX1-205ENST00000559339 hDV103S1A0JD37 113 aa2.23□□□□□ -2.05
SNX1-205ENST00000559339 F8W1H4 67 aa2.23□□□□□ -2.05
SNX1-205ENST00000559339 K7EQZ3 153 aa2.23□□□□□ -2.05
SNX1-205ENST00000559339 NDUFS5O43920 106 aa2.23□□□□□ -2.05
SNX1-205ENST00000559339 SPINK7P58062 85 aa2.23□□□□□ -2.05
SNX1-205ENST00000559339 MRPL34Q9BQ48 92 aaKnown RBP2.23□□□□□ -2.05
SNX1-205ENST00000559339 KRTAP10-6P60371 365 aaPredicted RBP2.22□□□□□ -2.05
SNX1-205ENST00000559339 LCE5AQ5TCM9 118 aa2.22□□□□□ -2.05
SNX1-205ENST00000559339 TMEM254Q8TBM7 123 aa2.22□□□□□ -2.05
SNX1-205ENST00000559339 MMP24-AS1A0A0U1RRL7 71 aa2.21□□□□□ -2.06
SNX1-205ENST00000559339 CASC2Q6XLA1 102 aa2.21□□□□□ -2.06
SNX1-205ENST00000559339 KRTAP4-7Q9BYR0 210 aa2.21□□□□□ -2.06
SNX1-205ENST00000559339 PRO0461Q9UI25 63 aa2.21□□□□□ -2.06
SNX1-205ENST00000559339 FSIP2Q5CZC0 6907 aa2.2□□□□□ -2.06
SNX1-205ENST00000559339 HRES1P13985 223 aa2.2□□□□□ -2.06
SNX1-205ENST00000559339 MPLKIPQ8TAP9 179 aa2.2□□□□□ -2.06
SNX1-205ENST00000559339 LINC00846Q9NV44 126 aa2.2□□□□□ -2.06
SNX1-205ENST00000559339 HCG22E2RYF7 251 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 CXCL6P80162 114 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 KRTAP15-1Q3LI76 137 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 ETDBQ3ZM63 59 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 WFDC13Q8IUB5 93 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 Q8N9L7 120 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 KRTAP4-9Q9BYQ8 210 aa2.19□□□□□ -2.06
SNX1-205ENST00000559339 C7orf65Q6ZTY9 151 aa2.18□□□□□ -2.06
SNX1-205ENST00000559339 IGKV2D-30A0A075B6S6 120 aa2.17□□□□□ -2.06
SNX1-205ENST00000559339 IGKV2-30P06310 120 aa2.17□□□□□ -2.06
SNX1-205ENST00000559339 ACYP1P07311 99 aa2.17□□□□□ -2.06
SNX1-205ENST00000559339 TP53AIP1Q9HCN2 124 aa2.16□□□□□ -2.06
SNX1-205ENST00000559339 FLGP20930 4061 aaPredicted RBP2.16□□□□□ -2.06
SNX1-205ENST00000559339 FAM240AA0A1B0GVK7 77 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 PCP4P48539 62 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 H1FX-AS1Q4G0G2 97 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 ATP5EP2Q5VTU8 51 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 Q5W150 140 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 CRCT1Q9UGL9 99 aa2.15□□□□□ -2.07
SNX1-205ENST00000559339 KRTAP9-8Q9BYQ0 159 aa2.14□□□□□ -2.07
SNX1-205ENST00000559339 KRTAP10-10P60014 251 aa2.13□□□□□ -2.07
SNX1-205ENST00000559339 HIST1H4AP62805 103 aaKnown RBP2.13□□□□□ -2.07
SNX1-205ENST00000559339 KRTAP4-11Q9BYQ6 195 aa2.13□□□□□ -2.07
SNX1-205ENST00000559339 C4orf26Q17RF5 130 aa2.12□□□□□ -2.07
SNX1-205ENST00000559339 TRAV22A0A0B4J277 110 aa2.11□□□□□ -2.07
SNX1-205ENST00000559339 J3QR89 54 aa2.11□□□□□ -2.07
SNX1-205ENST00000559339 MT2AP02795 61 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms