RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 Q6ZQT0 140 aa7.36□□□□□ -1.23
SHMT2-228ENST00000557302 SIGMAR1Q99720 223 aa7.36□□□□□ -1.23
SHMT2-228ENST00000557302 MTURNQ8N3F0 131 aa7.35□□□□□ -1.23
SHMT2-228ENST00000557302 OBSCN-AS1Q96MR7 158 aa7.35□□□□□ -1.23
SHMT2-228ENST00000557302 C14orf132Q9NPU4 83 aa7.35□□□□□ -1.23
SHMT2-228ENST00000557302 IGKV4-1P06312 121 aa7.34□□□□□ -1.23
SHMT2-228ENST00000557302 LINC00472Q9H8W2 130 aa7.34□□□□□ -1.23
SHMT2-228ENST00000557302 A0A0U1RQV1 116 aa7.33□□□□□ -1.24
SHMT2-228ENST00000557302 PCOTHQ58A44 107 aa7.33□□□□□ -1.24
SHMT2-228ENST00000557302 A0A1B0GW54 56 aa7.32□□□□□ -1.24
SHMT2-228ENST00000557302 RPL37P61927 97 aaKnown RBP7.32□□□□□ -1.24
SHMT2-228ENST00000557302 FAT4Q6V0I7 4981 aa7.31□□□□□ -1.24
SHMT2-228ENST00000557302 DEFB116Q30KQ4 102 aa7.31□□□□□ -1.24
SHMT2-228ENST00000557302 KRTAP4-12Q9BQ66 201 aa7.31□□□□□ -1.24
SHMT2-228ENST00000557302 KRTAP4-1Q9BYQ7 146 aa7.28□□□□□ -1.24
SHMT2-228ENST00000557302 DSCR10P59022 87 aa7.27□□□□□ -1.25
SHMT2-228ENST00000557302 Q75L30 129 aa7.27□□□□□ -1.25
SHMT2-228ENST00000557302 J3KT08 172 aa7.26□□□□□ -1.25
SHMT2-228ENST00000557302 ETDBQ3ZM63 59 aa7.26□□□□□ -1.25
SHMT2-228ENST00000557302 LINC00313P59037 77 aa7.25□□□□□ -1.25
SHMT2-228ENST00000557302 IGHV6-1A0A0B4J1U7 121 aa7.24□□□□□ -1.25
SHMT2-228ENST00000557302 J3QR89 54 aa7.24□□□□□ -1.25
SHMT2-228ENST00000557302 K7ERU9 68 aa7.23□□□□□ -1.25
SHMT2-228ENST00000557302 ATP11AUNQ6ZP68 121 aa7.23□□□□□ -1.25
SHMT2-228ENST00000557302 C20orf166-AS1Q96NR2 134 aa7.23□□□□□ -1.25
SHMT2-228ENST00000557302 A0A1B0GVX0 72 aa7.22□□□□□ -1.25
SHMT2-228ENST00000557302 KRTAP19-1Q8IUB9 90 aa7.22□□□□□ -1.25
SHMT2-228ENST00000557302 A8MUU9 505 aa7.21□□□□□ -1.26
SHMT2-228ENST00000557302 NREPQ16612 68 aa7.21□□□□□ -1.26
SHMT2-228ENST00000557302 NOTCH2NLQ7Z3S9 236 aa7.21□□□□□ -1.26
SHMT2-228ENST00000557302 C8orf87E5RJ46 101 aa7.2□□□□□ -1.26
SHMT2-228ENST00000557302 NDUFB1O75438 58 aa7.2□□□□□ -1.26
SHMT2-228ENST00000557302 LCE3BQ5TA77 95 aa7.2□□□□□ -1.26
SHMT2-228ENST00000557302 KRTAP16-1A8MUX0 517 aa7.19□□□□□ -1.26
SHMT2-228ENST00000557302 A8MWP4 228 aa7.18□□□□□ -1.26
SHMT2-228ENST00000557302 FAM240AA0A1B0GVK7 77 aa7.15□□□□□ -1.26
SHMT2-228ENST00000557302 IGKV3D-7A0A0C4DH55 119 aa7.14□□□□□ -1.27
SHMT2-228ENST00000557302 ACYP1P07311 99 aa7.14□□□□□ -1.27
SHMT2-228ENST00000557302 PRR15Q8IV56 129 aa7.12□□□□□ -1.27
SHMT2-228ENST00000557302 C8orf17Q9NRJ1 99 aa7.12□□□□□ -1.27
SHMT2-228ENST00000557302 BPY2O14599 106 aa7.11□□□□□ -1.27
SHMT2-228ENST00000557302 Q6ZVQ6 151 aa7.11□□□□□ -1.27
SHMT2-228ENST00000557302 KRTAP9-9Q9BYP9 154 aa7.11□□□□□ -1.27
SHMT2-228ENST00000557302 KRTAP9-4Q9BYQ2 154 aa7.11□□□□□ -1.27
SHMT2-228ENST00000557302 K7EQZ3 153 aa7.07□□□□□ -1.28
SHMT2-228ENST00000557302 KRTAP19-2Q3LHN2 52 aa7.07□□□□□ -1.28
SHMT2-228ENST00000557302 UBL5Q9BZL1 73 aa7.07□□□□□ -1.28
SHMT2-228ENST00000557302 LINC00846Q9NV44 126 aa7.07□□□□□ -1.28
SHMT2-228ENST00000557302 Q8N9P0 234 aaPredicted RBP7.05□□□□□ -1.28
SHMT2-228ENST00000557302 MMP24-AS1A0A0U1RRL7 71 aa7.04□□□□□ -1.28
SHMT2-228ENST00000557302 COX6B2Q6YFQ2 88 aa7.04□□□□□ -1.28
SHMT2-228ENST00000557302 TMEM254Q8TBM7 123 aa7.03□□□□□ -1.28
SHMT2-228ENST00000557302 ZCCHC13Q8WW36 166 aaKnown RBP7.03□□□□□ -1.28
SHMT2-228ENST00000557302 hDV103S1A0JD37 113 aa7.01□□□□□ -1.29
SHMT2-228ENST00000557302 MRPL34Q9BQ48 92 aaKnown RBP7.01□□□□□ -1.29
SHMT2-228ENST00000557302 Q8N9L7 120 aa7□□□□□ -1.29
SHMT2-228ENST00000557302 MT1HP80294 61 aa6.97□□□□□ -1.29
SHMT2-228ENST00000557302 LINC00643Q86TS7 51 aa6.97□□□□□ -1.29
SHMT2-228ENST00000557302 WFDC13Q8IUB5 93 aa6.96□□□□□ -1.3
SHMT2-228ENST00000557302 NDUFS5O43920 106 aa6.95□□□□□ -1.3
SHMT2-228ENST00000557302 CASC2Q6XLA1 102 aa6.95□□□□□ -1.3
SHMT2-228ENST00000557302 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
SHMT2-228ENST00000557302 ATP5EP2Q5VTU8 51 aa6.94□□□□□ -1.3
SHMT2-228ENST00000557302 CXCL6P80162 114 aa6.93□□□□□ -1.3
SHMT2-228ENST00000557302 IMUPQ9GZP8 106 aa6.93□□□□□ -1.3
SHMT2-228ENST00000557302 HCG22E2RYF7 251 aa6.91□□□□□ -1.3
SHMT2-228ENST00000557302 HRES1P13985 223 aa6.91□□□□□ -1.3
SHMT2-228ENST00000557302 SPINK7P58062 85 aa6.91□□□□□ -1.3
SHMT2-228ENST00000557302 FLGP20930 4061 aaPredicted RBP6.91□□□□□ -1.3
SHMT2-228ENST00000557302 RBM12B-AS1Q9P1G2 102 aa6.9□□□□□ -1.3
SHMT2-228ENST00000557302 FAM236DA0A1B0GTK5 79 aa6.89□□□□□ -1.31
SHMT2-228ENST00000557302 FAM236CP0DP71 79 aa6.89□□□□□ -1.31
SHMT2-228ENST00000557302 M0R2T5 61 aa6.88□□□□□ -1.31
SHMT2-228ENST00000557302 MPLKIPQ8TAP9 179 aa6.88□□□□□ -1.31
SHMT2-228ENST00000557302 FSIP2Q5CZC0 6907 aa6.85□□□□□ -1.31
SHMT2-228ENST00000557302 MT-ATP8P03928 68 aa6.85□□□□□ -1.31
SHMT2-228ENST00000557302 SCGB1A1P11684 91 aa6.85□□□□□ -1.31
SHMT2-228ENST00000557302 Q5W150 140 aa6.84□□□□□ -1.31
SHMT2-228ENST00000557302 IGKV2D-30A0A075B6S6 120 aa6.8□□□□□ -1.32
SHMT2-228ENST00000557302 IGKV2-30P06310 120 aa6.8□□□□□ -1.32
SHMT2-228ENST00000557302 KRTAP10-6P60371 365 aaPredicted RBP6.8□□□□□ -1.32
SHMT2-228ENST00000557302 C7orf65Q6ZTY9 151 aa6.79□□□□□ -1.32
SHMT2-228ENST00000557302 TP53AIP1Q9HCN2 124 aa6.78□□□□□ -1.32
SHMT2-228ENST00000557302 HIST1H4AP62805 103 aaKnown RBP6.77□□□□□ -1.33
SHMT2-228ENST00000557302 LCE1DQ5T752 114 aa6.75□□□□□ -1.33
SHMT2-228ENST00000557302 CRCT1Q9UGL9 99 aa6.73□□□□□ -1.33
SHMT2-228ENST00000557302 A0A087WVE0 104 aa6.69□□□□□ -1.34
SHMT2-228ENST00000557302 KRTAP4-7Q9BYR0 210 aa6.69□□□□□ -1.34
SHMT2-228ENST00000557302 FAM236AA0A1B0GUQ0 79 aa6.67□□□□□ -1.34
SHMT2-228ENST00000557302 FAM236BA0A1B0GV22 79 aa6.67□□□□□ -1.34
SHMT2-228ENST00000557302 ATOX1O00244 68 aa6.67□□□□□ -1.34
SHMT2-228ENST00000557302 LCE4AQ5TA78 99 aa6.67□□□□□ -1.34
SHMT2-228ENST00000557302 TRAV22A0A0B4J277 110 aa6.65□□□□□ -1.34
SHMT2-228ENST00000557302 H1FX-AS1Q4G0G2 97 aa6.65□□□□□ -1.34
SHMT2-228ENST00000557302 SMIM20Q8N5G0 67 aa6.65□□□□□ -1.34
SHMT2-228ENST00000557302 C4orf26Q17RF5 130 aa6.64□□□□□ -1.35
SHMT2-228ENST00000557302 UQCRQO14949 82 aa6.63□□□□□ -1.35
SHMT2-228ENST00000557302 H3BS24 57 aa6.61□□□□□ -1.35
SHMT2-228ENST00000557302 KRTAP9-8Q9BYQ0 159 aa6.61□□□□□ -1.35
SHMT2-228ENST00000557302 LOC101927531A0A1B0GV80 90 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 190.6 ms