RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HIST1H2BDP58876 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST1H2BCP62807 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST2H2BEQ16778 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.95□□□□□ -1.62
VPS29-208ENST00000550267 BVES-AS1Q5T3Y7 98 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST1H2BHQ93079 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST1H2BNQ99877 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 HIST1H2BMQ99879 126 aa4.95□□□□□ -1.62
VPS29-208ENST00000550267 A0A0A0MQY5 61 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 A0A1W2PNM2 257 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 SPINK7P58062 85 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 DEFB116Q30KQ4 102 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 C12orf57Q99622 126 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 KRTAP4-4Q9BYR3 166 aa4.93□□□□□ -1.62
VPS29-208ENST00000550267 H3BMG7 143 aa4.92□□□□□ -1.62
VPS29-208ENST00000550267 IGHV6-1A0A0B4J1U7 121 aa4.91□□□□□ -1.62
VPS29-208ENST00000550267 KRTAP5-9P26371 169 aa4.91□□□□□ -1.62
VPS29-208ENST00000550267 ZCCHC13Q8WW36 166 aaKnown RBP4.9□□□□□ -1.63
VPS29-208ENST00000550267 WFDC13Q8IUB5 93 aa4.88□□□□□ -1.63
VPS29-208ENST00000550267 FAM218AQ96MZ4 157 aa4.88□□□□□ -1.63
VPS29-208ENST00000550267 PAM16Q9Y3D7 125 aa4.88□□□□□ -1.63
VPS29-208ENST00000550267 A6NN06 94 aa4.87□□□□□ -1.63
VPS29-208ENST00000550267 KRTAP9-6A8MVA2 160 aa4.87□□□□□ -1.63
VPS29-208ENST00000550267 LINC00472Q9H8W2 130 aa4.87□□□□□ -1.63
VPS29-208ENST00000550267 FABP2P12104 132 aa4.86□□□□□ -1.63
VPS29-208ENST00000550267 TRBV7-4A0A0J9YYF1 115 aa4.85□□□□□ -1.63
VPS29-208ENST00000550267 C8orf87E5RJ46 101 aa4.85□□□□□ -1.63
VPS29-208ENST00000550267 SNCGO76070 127 aa4.85□□□□□ -1.63
VPS29-208ENST00000550267 SNRPEP62304 92 aaKnown RBP4.84□□□□□ -1.63
VPS29-208ENST00000550267 A0A1B0GV72 72 aa4.83□□□□□ -1.64
VPS29-208ENST00000550267 A0A1B0GVX0 72 aa4.83□□□□□ -1.64
VPS29-208ENST00000550267 H0YGX0 51 aa4.83□□□□□ -1.64
VPS29-208ENST00000550267 COA6Q5JTJ3 125 aaKnown RBP4.83□□□□□ -1.64
VPS29-208ENST00000550267 ANKRD29Q8N6D5 301 aa4.83□□□□□ -1.64
VPS29-208ENST00000550267 MDN1Q9NU22 5596 aa4.83□□□□□ -1.64
VPS29-208ENST00000550267 RAB37Q96AX2 223 aa4.82□□□□□ -1.64
VPS29-208ENST00000550267 HIST1H4GQ99525 98 aa4.82□□□□□ -1.64
VPS29-208ENST00000550267 KMT2DO14686 5537 aa4.8□□□□□ -1.64
VPS29-208ENST00000550267 TRACP01848 142 aa4.79□□□□□ -1.64
VPS29-208ENST00000550267 MT1BP07438 61 aa4.79□□□□□ -1.64
VPS29-208ENST00000550267 KRTAP2-3P0C7H8 128 aa4.79□□□□□ -1.64
VPS29-208ENST00000550267 H1FX-AS1Q4G0G2 97 aa4.79□□□□□ -1.64
VPS29-208ENST00000550267 KRTAP2-4Q9BYR9 128 aa4.79□□□□□ -1.64
VPS29-208ENST00000550267 A0A1B0GX51 115 aa4.78□□□□□ -1.64
VPS29-208ENST00000550267 CCKP06307 115 aa4.78□□□□□ -1.64
VPS29-208ENST00000550267 HSBP1L1C9JCN9 74 aa4.77□□□□□ -1.65
VPS29-208ENST00000550267 LYRM7Q5U5X0 104 aa4.76□□□□□ -1.65
VPS29-208ENST00000550267 Q5VV11 94 aa4.75□□□□□ -1.65
VPS29-208ENST00000550267 A0A0B4J2C4 111 aa4.74□□□□□ -1.65
VPS29-208ENST00000550267 VPS25Q9BRG1 176 aa4.73□□□□□ -1.65
VPS29-208ENST00000550267 ORMDL1Q9P0S3 153 aa4.72□□□□□ -1.65
VPS29-208ENST00000550267 IGKV3D-7A0A0C4DH55 119 aa4.71□□□□□ -1.66
VPS29-208ENST00000550267 KRTAP19-8Q3LI54 63 aa4.71□□□□□ -1.66
VPS29-208ENST00000550267 J3KT08 172 aa4.7□□□□□ -1.66
VPS29-208ENST00000550267 DNAL4O96015 105 aa4.7□□□□□ -1.66
VPS29-208ENST00000550267 COX8AP10176 69 aa4.7□□□□□ -1.66
VPS29-208ENST00000550267 KRTAP10-12P60413 245 aa4.7□□□□□ -1.66
VPS29-208ENST00000550267 C8orf17Q9NRJ1 99 aa4.7□□□□□ -1.66
VPS29-208ENST00000550267 DSCR8Q96T75 97 aa4.69□□□□□ -1.66
VPS29-208ENST00000550267 FAM236AA0A1B0GUQ0 79 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 FAM236BA0A1B0GV22 79 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 H3BQ85 93 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 TMEM256-PLSCR3K7ERE1 68 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 NDUFB1O75438 58 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 HIST1H2BLQ99880 126 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 PRO1854Q9UHT4 67 aa4.68□□□□□ -1.66
VPS29-208ENST00000550267 SPRR2GQ9BYE4 73 aa4.67□□□□□ -1.66
VPS29-208ENST00000550267 DLEU1O43261 78 aa4.66□□□□□ -1.66
VPS29-208ENST00000550267 HIST3H2BBQ8N257 126 aa4.66□□□□□ -1.66
VPS29-208ENST00000550267 S100A2P29034 98 aa4.65□□□□□ -1.67
VPS29-208ENST00000550267 UBE2V1Q13404 147 aa4.65□□□□□ -1.67
VPS29-208ENST00000550267 Q6ZVQ6 151 aa4.65□□□□□ -1.67
VPS29-208ENST00000550267 SPRR2EP22531 72 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 SPRR2BP35325 72 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 SPRR2AP35326 72 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 C5orf47Q569G3 176 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 C14orf144Q96I85 54 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 HIGD1BQ9P298 99 aa4.64□□□□□ -1.67
VPS29-208ENST00000550267 RBM3P98179 157 aaKnown RBP4.63□□□□□ -1.67
VPS29-208ENST00000550267 Q6ZQT0 140 aa4.63□□□□□ -1.67
VPS29-208ENST00000550267 CEND1Q8N111 149 aa4.63□□□□□ -1.67
VPS29-208ENST00000550267 C2orf91Q6ZV80 131 aa4.62□□□□□ -1.67
VPS29-208ENST00000550267 SPRR2FQ96RM1 72 aa4.62□□□□□ -1.67
VPS29-208ENST00000550267 KRTAP2-1Q9BYU5 128 aa4.62□□□□□ -1.67
VPS29-208ENST00000550267 PSMB2P49721 201 aa4.61□□□□□ -1.67
VPS29-208ENST00000550267 FXYD2P54710 66 aa4.61□□□□□ -1.67
VPS29-208ENST00000550267 LCE1FQ5T754 118 aa4.6□□□□□ -1.67
VPS29-208ENST00000550267 MRPL34Q9BQ48 92 aaKnown RBP4.59□□□□□ -1.67
VPS29-208ENST00000550267 IMUPQ9GZP8 106 aa4.59□□□□□ -1.67
VPS29-208ENST00000550267 MMP24-AS1A0A0U1RRL7 71 aa4.58□□□□□ -1.68
VPS29-208ENST00000550267 C9JAW5 83 aa4.58□□□□□ -1.68
VPS29-208ENST00000550267 C4orf26Q17RF5 130 aa4.58□□□□□ -1.68
VPS29-208ENST00000550267 C7orf65Q6ZTY9 151 aa4.58□□□□□ -1.68
VPS29-208ENST00000550267 TMEM254Q8TBM7 123 aa4.58□□□□□ -1.68
VPS29-208ENST00000550267 NDUFS5O43920 106 aa4.57□□□□□ -1.68
VPS29-208ENST00000550267 PRR15Q8IV56 129 aa4.57□□□□□ -1.68
VPS29-208ENST00000550267 K7ERJ3 54 aa4.56□□□□□ -1.68
VPS29-208ENST00000550267 COX6CP09669 75 aa4.56□□□□□ -1.68
VPS29-208ENST00000550267 SPATA45Q537H7 98 aa4.56□□□□□ -1.68
VPS29-208ENST00000550267 Q5W150 140 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 271.5 ms