RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ATXN8Q156A1 80 aa6.32□□□□□ -1.4
YBX3-217ENST00000546164 Q75L30 129 aa6.32□□□□□ -1.4
YBX3-217ENST00000546164 RBM3P98179 157 aaKnown RBP6.31□□□□□ -1.4
YBX3-217ENST00000546164 NAA38Q9BRA0 125 aaKnown RBP6.3□□□□□ -1.4
YBX3-217ENST00000546164 KRTAP19-2Q3LHN2 52 aa6.29□□□□□ -1.4
YBX3-217ENST00000546164 LYRM7Q5U5X0 104 aa6.29□□□□□ -1.4
YBX3-217ENST00000546164 DSCR8Q96T75 97 aa6.29□□□□□ -1.4
YBX3-217ENST00000546164 LINC00472Q9H8W2 130 aa6.28□□□□□ -1.4
YBX3-217ENST00000546164 C20orf166-AS1Q96NR2 134 aa6.27□□□□□ -1.41
YBX3-217ENST00000546164 SIGMAR1Q99720 223 aa6.27□□□□□ -1.41
YBX3-217ENST00000546164 TRBV20-1A0A075B6N2 111 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 A8MUU9 505 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 C9JAW5 83 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 IGKV4-1P06312 121 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 BATFQ16520 125 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 C21orf62-AS1Q17RA5 79 aa6.26□□□□□ -1.41
YBX3-217ENST00000546164 JMJD7-PLA2G4BH0Y9G9 81 aa6.25□□□□□ -1.41
YBX3-217ENST00000546164 ATP11AUNQ6ZP68 121 aa6.25□□□□□ -1.41
YBX3-217ENST00000546164 VPS25Q9BRG1 176 aa6.24□□□□□ -1.41
YBX3-217ENST00000546164 LOC110117498A0A087WWA1 95 aa6.23□□□□□ -1.41
YBX3-217ENST00000546164 A0A1B0GW54 56 aa6.23□□□□□ -1.41
YBX3-217ENST00000546164 DSCR10P59022 87 aa6.23□□□□□ -1.41
YBX3-217ENST00000546164 FLGP20930 4061 aaPredicted RBP6.22□□□□□ -1.41
YBX3-217ENST00000546164 C9orf118A6NHY6 69 aa6.22□□□□□ -1.41
YBX3-217ENST00000546164 PDE6GP18545 87 aa6.22□□□□□ -1.41
YBX3-217ENST00000546164 LINC00313P59037 77 aa6.22□□□□□ -1.41
YBX3-217ENST00000546164 Q6ZQT0 140 aa6.22□□□□□ -1.41
YBX3-217ENST00000546164 KRTAP16-1A8MUX0 517 aa6.21□□□□□ -1.42
YBX3-217ENST00000546164 TAX1BP3O14907 124 aa6.21□□□□□ -1.42
YBX3-217ENST00000546164 DEFB116Q30KQ4 102 aa6.21□□□□□ -1.42
YBX3-217ENST00000546164 A0A1W2PPM0 123 aa6.19□□□□□ -1.42
YBX3-217ENST00000546164 J3KT08 172 aa6.19□□□□□ -1.42
YBX3-217ENST00000546164 MT1HP80294 61 aa6.19□□□□□ -1.42
YBX3-217ENST00000546164 NOTCH2NLQ7Z3S9 236 aa6.18□□□□□ -1.42
YBX3-217ENST00000546164 IGHV6-1A0A0B4J1U7 121 aa6.17□□□□□ -1.42
YBX3-217ENST00000546164 A0A1B0GVX0 72 aa6.17□□□□□ -1.42
YBX3-217ENST00000546164 C8orf87E5RJ46 101 aa6.17□□□□□ -1.42
YBX3-217ENST00000546164 H3BT86 120 aa6.17□□□□□ -1.42
YBX3-217ENST00000546164 C14orf132Q9NPU4 83 aa6.17□□□□□ -1.42
YBX3-217ENST00000546164 COX6B2Q6YFQ2 88 aa6.14□□□□□ -1.43
YBX3-217ENST00000546164 A8MWP4 228 aa6.11□□□□□ -1.43
YBX3-217ENST00000546164 NDUFB1O75438 58 aa6.11□□□□□ -1.43
YBX3-217ENST00000546164 SPCS1Q9Y6A9 102 aa6.11□□□□□ -1.43
YBX3-217ENST00000546164 COL5A1-AS1Q5SY13 56 aa6.1□□□□□ -1.43
YBX3-217ENST00000546164 MTURNQ8N3F0 131 aa6.1□□□□□ -1.43
YBX3-217ENST00000546164 IGKV3D-7A0A0C4DH55 119 aa6.08□□□□□ -1.44
YBX3-217ENST00000546164 NREPQ16612 68 aa6.08□□□□□ -1.44
YBX3-217ENST00000546164 Q8N9P0 234 aaPredicted RBP6.07□□□□□ -1.44
YBX3-217ENST00000546164 C8orf17Q9NRJ1 99 aa6.06□□□□□ -1.44
YBX3-217ENST00000546164 KRTAP10-6P60371 365 aaPredicted RBP6.05□□□□□ -1.44
YBX3-217ENST00000546164 PRR15Q8IV56 129 aa6.05□□□□□ -1.44
YBX3-217ENST00000546164 M0R2T5 61 aa6.04□□□□□ -1.44
YBX3-217ENST00000546164 ZCCHC13Q8WW36 166 aaKnown RBP6.04□□□□□ -1.44
YBX3-217ENST00000546164 K7EP34 96 aa6.03□□□□□ -1.44
YBX3-217ENST00000546164 MPLKIPQ8TAP9 179 aa6.03□□□□□ -1.44
YBX3-217ENST00000546164 PRO0461Q9UI25 63 aa6.03□□□□□ -1.44
YBX3-217ENST00000546164 HRES1P13985 223 aa6.02□□□□□ -1.45
YBX3-217ENST00000546164 Q6ZVQ6 151 aa6.02□□□□□ -1.45
YBX3-217ENST00000546164 MMP24-AS1A0A0U1RRL7 71 aa5.99□□□□□ -1.45
YBX3-217ENST00000546164 K7EQZ3 153 aa5.99□□□□□ -1.45
YBX3-217ENST00000546164 TMEM254Q8TBM7 123 aa5.99□□□□□ -1.45
YBX3-217ENST00000546164 BPY2O14599 106 aa5.98□□□□□ -1.45
YBX3-217ENST00000546164 MRPL34Q9BQ48 92 aaKnown RBP5.97□□□□□ -1.45
YBX3-217ENST00000546164 RBM12B-AS1Q9P1G2 102 aa5.97□□□□□ -1.45
YBX3-217ENST00000546164 PCP4L1A6NKN8 68 aa5.96□□□□□ -1.46
YBX3-217ENST00000546164 SPINK7P58062 85 aa5.96□□□□□ -1.46
YBX3-217ENST00000546164 GTF2H5Q6ZYL4 71 aa5.96□□□□□ -1.46
YBX3-217ENST00000546164 FAM236DA0A1B0GTK5 79 aa5.95□□□□□ -1.46
YBX3-217ENST00000546164 hDV103S1A0JD37 113 aa5.95□□□□□ -1.46
YBX3-217ENST00000546164 FAM236CP0DP71 79 aa5.95□□□□□ -1.46
YBX3-217ENST00000546164 F8W1H4 67 aa5.93□□□□□ -1.46
YBX3-217ENST00000546164 LINC00846Q9NV44 126 aa5.93□□□□□ -1.46
YBX3-217ENST00000546164 UBL5Q9BZL1 73 aa5.91□□□□□ -1.46
YBX3-217ENST00000546164 FSIP2Q5CZC0 6907 aa5.91□□□□□ -1.46
YBX3-217ENST00000546164 Q8N9L7 120 aa5.9□□□□□ -1.46
YBX3-217ENST00000546164 NDUFS5O43920 106 aa5.88□□□□□ -1.47
YBX3-217ENST00000546164 ETDBQ3ZM63 59 aa5.88□□□□□ -1.47
YBX3-217ENST00000546164 CASC2Q6XLA1 102 aa5.87□□□□□ -1.47
YBX3-217ENST00000546164 WFDC13Q8IUB5 93 aa5.87□□□□□ -1.47
YBX3-217ENST00000546164 Q5W150 140 aa5.84□□□□□ -1.47
YBX3-217ENST00000546164 HCG22E2RYF7 251 aa5.83□□□□□ -1.48
YBX3-217ENST00000546164 CXCL6P80162 114 aa5.82□□□□□ -1.48
YBX3-217ENST00000546164 CRCT1Q9UGL9 99 aa5.82□□□□□ -1.48
YBX3-217ENST00000546164 C7orf65Q6ZTY9 151 aa5.8□□□□□ -1.48
YBX3-217ENST00000546164 MT2AP02795 61 aa5.79□□□□□ -1.48
YBX3-217ENST00000546164 IGKV2D-30A0A075B6S6 120 aa5.78□□□□□ -1.48
YBX3-217ENST00000546164 IGKV2-30P06310 120 aa5.78□□□□□ -1.48
YBX3-217ENST00000546164 ACYP1P07311 99 aa5.77□□□□□ -1.49
YBX3-217ENST00000546164 USH2AO75445 5202 aa5.77□□□□□ -1.49
YBX3-217ENST00000546164 FAM240AA0A1B0GVK7 77 aa5.75□□□□□ -1.49
YBX3-217ENST00000546164 MT1FP04733 61 aa5.74□□□□□ -1.49
YBX3-217ENST00000546164 H1FX-AS1Q4G0G2 97 aa5.74□□□□□ -1.49
YBX3-217ENST00000546164 TP53AIP1Q9HCN2 124 aa5.74□□□□□ -1.49
YBX3-217ENST00000546164 SSPOA2VEC9 5147 aa5.71□□□□□ -1.5
YBX3-217ENST00000546164 ATP5EP2Q5VTU8 51 aa5.7□□□□□ -1.5
YBX3-217ENST00000546164 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
YBX3-217ENST00000546164 C4orf26Q17RF5 130 aa5.68□□□□□ -1.5
YBX3-217ENST00000546164 A0A1B0GV90 55 aa5.66□□□□□ -1.5
YBX3-217ENST00000546164 KRTAP3-1Q9BYR8 98 aa5.63□□□□□ -1.51
YBX3-217ENST00000546164 LINC00643Q86TS7 51 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms