RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 C8orf87E5RJ46 101 aa8.94□□□□□ -0.98
PRPF40A-212ENST00000545856 PRR4Q16378 134 aa8.94□□□□□ -0.98
PRPF40A-212ENST00000545856 TPRXLQ17RH7 258 aa8.94□□□□□ -0.98
PRPF40A-212ENST00000545856 A0A1B0GVX0 72 aa8.93□□□□□ -0.98
PRPF40A-212ENST00000545856 DSCR10P59022 87 aa8.92□□□□□ -0.98
PRPF40A-212ENST00000545856 DEFB116Q30KQ4 102 aa8.91□□□□□ -0.98
PRPF40A-212ENST00000545856 PRR15Q8IV56 129 aa8.91□□□□□ -0.98
PRPF40A-212ENST00000545856 CDIP1Q9H305 208 aa8.9□□□□□ -0.98
PRPF40A-212ENST00000545856 IGKV3D-7A0A0C4DH55 119 aa8.88□□□□□ -0.99
PRPF40A-212ENST00000545856 HMCN2Q8NDA2 5059 aa8.88□□□□□ -0.99
PRPF40A-212ENST00000545856 KRTAP13-3Q3SY46 172 aa8.87□□□□□ -0.99
PRPF40A-212ENST00000545856 K7EQZ3 153 aa8.86□□□□□ -0.99
PRPF40A-212ENST00000545856 IGHV6-1A0A0B4J1U7 121 aa8.85□□□□□ -0.99
PRPF40A-212ENST00000545856 LINC00313P59037 77 aa8.85□□□□□ -0.99
PRPF40A-212ENST00000545856 IMUPQ9GZP8 106 aa8.85□□□□□ -0.99
PRPF40A-212ENST00000545856 C8orf17Q9NRJ1 99 aa8.83□□□□□ -1
PRPF40A-212ENST00000545856 MMP24-AS1A0A0U1RRL7 71 aa8.78□□□□□ -1
PRPF40A-212ENST00000545856 TMEM254Q8TBM7 123 aa8.78□□□□□ -1
PRPF40A-212ENST00000545856 HCG22E2RYF7 251 aa8.77□□□□□ -1.01
PRPF40A-212ENST00000545856 Q8N9L7 120 aa8.77□□□□□ -1.01
PRPF40A-212ENST00000545856 hDV103S1A0JD37 113 aa8.76□□□□□ -1.01
PRPF40A-212ENST00000545856 HIST1H4AP62805 103 aaKnown RBP8.76□□□□□ -1.01
PRPF40A-212ENST00000545856 C9orf92A6NGG3 77 aa8.75□□□□□ -1.01
PRPF40A-212ENST00000545856 XP32Q5T750 250 aa8.75□□□□□ -1.01
PRPF40A-212ENST00000545856 KRTAP16-1A8MUX0 517 aa8.74□□□□□ -1.01
PRPF40A-212ENST00000545856 C20orf166-AS1Q96NR2 134 aa8.74□□□□□ -1.01
PRPF40A-212ENST00000545856 CASC2Q6XLA1 102 aa8.73□□□□□ -1.01
PRPF40A-212ENST00000545856 Q75L30 129 aa8.73□□□□□ -1.01
PRPF40A-212ENST00000545856 Q8N9P0 234 aaPredicted RBP8.73□□□□□ -1.01
PRPF40A-212ENST00000545856 MRPL34Q9BQ48 92 aaKnown RBP8.73□□□□□ -1.01
PRPF40A-212ENST00000545856 A8MUU9 505 aa8.72□□□□□ -1.01
PRPF40A-212ENST00000545856 NOTCH2NLQ7Z3S9 236 aa8.72□□□□□ -1.01
PRPF40A-212ENST00000545856 MT-ATP8P03928 68 aa8.71□□□□□ -1.02
PRPF40A-212ENST00000545856 LRP2P98164 4655 aa8.69□□□□□ -1.02
PRPF40A-212ENST00000545856 LPAP08519 4548 aa8.68□□□□□ -1.02
PRPF40A-212ENST00000545856 RPL37P61927 97 aaKnown RBP8.68□□□□□ -1.02
PRPF40A-212ENST00000545856 WFDC13Q8IUB5 93 aa8.67□□□□□ -1.02
PRPF40A-212ENST00000545856 TP53AIP1Q9HCN2 124 aa8.65□□□□□ -1.02
PRPF40A-212ENST00000545856 A0A087WVE0 104 aa8.64□□□□□ -1.03
PRPF40A-212ENST00000545856 SEC61BP60468 96 aaKnown RBP8.64□□□□□ -1.03
PRPF40A-212ENST00000545856 ATP11AUNQ6ZP68 121 aa8.61□□□□□ -1.03
PRPF40A-212ENST00000545856 MUC17Q685J3 4493 aa8.6□□□□□ -1.03
PRPF40A-212ENST00000545856 NDUFS5O43920 106 aa8.59□□□□□ -1.03
PRPF40A-212ENST00000545856 SMIM20Q8N5G0 67 aa8.58□□□□□ -1.04
PRPF40A-212ENST00000545856 ZCCHC13Q8WW36 166 aaKnown RBP8.57□□□□□ -1.04
PRPF40A-212ENST00000545856 FAM236AA0A1B0GUQ0 79 aa8.55□□□□□ -1.04
PRPF40A-212ENST00000545856 FAM236BA0A1B0GV22 79 aa8.55□□□□□ -1.04
PRPF40A-212ENST00000545856 SCGB1A1P11684 91 aa8.55□□□□□ -1.04
PRPF40A-212ENST00000545856 ATOX1O00244 68 aa8.53□□□□□ -1.04
PRPF40A-212ENST00000545856 UQCRQO14949 82 aa8.53□□□□□ -1.04
PRPF40A-212ENST00000545856 OCR1Q9BZK8 76 aa8.5□□□□□ -1.05
PRPF40A-212ENST00000545856 UBR4Q5T4S7 5183 aa8.48□□□□□ -1.05
PRPF40A-212ENST00000545856 PCOTHQ58A44 107 aa8.48□□□□□ -1.05
PRPF40A-212ENST00000545856 TRAV22A0A0B4J277 110 aa8.48□□□□□ -1.05
PRPF40A-212ENST00000545856 TRAV7A0A075B6U4 112 aa8.45□□□□□ -1.06
PRPF40A-212ENST00000545856 C5orf47Q569G3 176 aa8.45□□□□□ -1.06
PRPF40A-212ENST00000545856 H3BPC8 53 aa8.43□□□□□ -1.06
PRPF40A-212ENST00000545856 LCE2BO14633 110 aa8.43□□□□□ -1.06
PRPF40A-212ENST00000545856 MP68P56378 58 aa8.42□□□□□ -1.06
PRPF40A-212ENST00000545856 Q5W150 140 aa8.42□□□□□ -1.06
PRPF40A-212ENST00000545856 LOC101927531A0A1B0GV80 90 aa8.39□□□□□ -1.07
PRPF40A-212ENST00000545856 C7orf65Q6ZTY9 151 aa8.39□□□□□ -1.07
PRPF40A-212ENST00000545856 H0Y9P7 68 aa8.38□□□□□ -1.07
PRPF40A-212ENST00000545856 SERP2Q8N6R1 65 aa8.37□□□□□ -1.07
PRPF40A-212ENST00000545856 RNF213Q63HN8 5207 aa8.37□□□□□ -1.07
PRPF40A-212ENST00000545856 IGKV2-30P06310 120 aa8.35□□□□□ -1.07
PRPF40A-212ENST00000545856 SPINK7P58062 85 aa8.35□□□□□ -1.07
PRPF40A-212ENST00000545856 IGKV2D-30A0A075B6S6 120 aa8.3□□□□□ -1.08
PRPF40A-212ENST00000545856 C1orf64Q8NEQ6 169 aa8.3□□□□□ -1.08
PRPF40A-212ENST00000545856 LINC00208Q96KT6 92 aa8.29□□□□□ -1.08
PRPF40A-212ENST00000545856 CYP4F30PQ9H0H9 118 aa8.28□□□□□ -1.08
PRPF40A-212ENST00000545856 MUC2Q02817 5179 aa8.27□□□□□ -1.09
PRPF40A-212ENST00000545856 COX7CP15954 63 aa8.27□□□□□ -1.09
PRPF40A-212ENST00000545856 ANAPC13Q9BS18 74 aa8.27□□□□□ -1.09
PRPF40A-212ENST00000545856 KRTAP4-1Q9BYQ7 146 aa8.25□□□□□ -1.09
PRPF40A-212ENST00000545856 HRES1P13985 223 aa8.23□□□□□ -1.09
PRPF40A-212ENST00000545856 A0A0U1RQV1 116 aa8.22□□□□□ -1.09
PRPF40A-212ENST00000545856 MPLKIPQ8TAP9 179 aa8.22□□□□□ -1.09
PRPF40A-212ENST00000545856 RBM12B-AS1Q9P1G2 102 aa8.22□□□□□ -1.09
PRPF40A-212ENST00000545856 KLKP1Q107X0 134 aa8.22□□□□□ -1.09
PRPF40A-212ENST00000545856 C20orf197Q8N268 126 aa8.19□□□□□ -1.1
PRPF40A-212ENST00000545856 NDUFC1O43677 76 aa8.16□□□□□ -1.1
PRPF40A-212ENST00000545856 COX6B2Q6YFQ2 88 aa8.13□□□□□ -1.11
PRPF40A-212ENST00000545856 A8MUN3 132 aa8.1□□□□□ -1.11
PRPF40A-212ENST00000545856 SNURFQ9Y675 71 aa8.1□□□□□ -1.11
PRPF40A-212ENST00000545856 FAM236DA0A1B0GTK5 79 aa8.09□□□□□ -1.12
PRPF40A-212ENST00000545856 FAM236CP0DP71 79 aa8.09□□□□□ -1.12
PRPF40A-212ENST00000545856 SPANXA2-OT1Q8N9U9 137 aa8.09□□□□□ -1.12
PRPF40A-212ENST00000545856 C4orf26Q17RF5 130 aa8.08□□□□□ -1.12
PRPF40A-212ENST00000545856 FLGP20930 4061 aaPredicted RBP8.07□□□□□ -1.12
PRPF40A-212ENST00000545856 KRTAP19-2Q3LHN2 52 aa8.06□□□□□ -1.12
PRPF40A-212ENST00000545856 FAT4Q6V0I7 4981 aa8.04□□□□□ -1.12
PRPF40A-212ENST00000545856 H1FX-AS1Q4G0G2 97 aa8.02□□□□□ -1.13
PRPF40A-212ENST00000545856 CCDC179H3BU77 68 aa8.01□□□□□ -1.13
PRPF40A-212ENST00000545856 DMAC1Q96GE9 116 aa8□□□□□ -1.13
PRPF40A-212ENST00000545856 H7BZZ5 65 aa7.99□□□□□ -1.13
PRPF40A-212ENST00000545856 LCE2CQ5TA81 110 aa7.98□□□□□ -1.13
PRPF40A-212ENST00000545856 LCE2AQ5TA79 106 aaPredicted RBP7.97□□□□□ -1.13
PRPF40A-212ENST00000545856 KRTAP3-1Q9BYR8 98 aa7.96□□□□□ -1.14
PRPF40A-212ENST00000545856 ATP5EP56381 51 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms