RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ZNF706Q9Y5V0 76 aaPredicted RBP5.81□□□□□ -1.48
CTNNA1-243ENST00000540387 SPATA8Q6RVD6 105 aa5.81□□□□□ -1.48
CTNNA1-243ENST00000540387 KRTAP7-1Q8IUC3 87 aa5.8□□□□□ -1.48
CTNNA1-243ENST00000540387 TP53AIP1Q9HCN2 124 aa5.8□□□□□ -1.48
CTNNA1-243ENST00000540387 LINC01556Q5JQF7 62 aa5.79□□□□□ -1.48
CTNNA1-243ENST00000540387 UBE2DNLQ8IWF7 75 aa5.79□□□□□ -1.48
CTNNA1-243ENST00000540387 DNAH10OSP0CZ25 163 aa5.78□□□□□ -1.48
CTNNA1-243ENST00000540387 C1orf134Q5TEV5 83 aa5.78□□□□□ -1.48
CTNNA1-243ENST00000540387 CASC10Q5T4H9 136 aa5.77□□□□□ -1.49
CTNNA1-243ENST00000540387 TLX1NBP0CAT3 122 aa5.76□□□□□ -1.49
CTNNA1-243ENST00000540387 LORP23490 312 aaPredicted RBP5.76□□□□□ -1.49
CTNNA1-243ENST00000540387 REG3GQ6UW15 175 aa5.76□□□□□ -1.49
CTNNA1-243ENST00000540387 MIR22HGQ0VDD5 57 aa5.75□□□□□ -1.49
CTNNA1-243ENST00000540387 DNAH1Q9P2D7 4330 aa5.74□□□□□ -1.49
CTNNA1-243ENST00000540387 A0A1B0GU69 56 aa5.74□□□□□ -1.49
CTNNA1-243ENST00000540387 KRTAP1-5Q9BYS1 174 aa5.74□□□□□ -1.49
CTNNA1-243ENST00000540387 ALMS1Q8TCU4 4167 aa5.74□□□□□ -1.49
CTNNA1-243ENST00000540387 PRLHP81277 87 aa5.73□□□□□ -1.49
CTNNA1-243ENST00000540387 VPS13DQ5THJ4 4388 aa5.72□□□□□ -1.49
CTNNA1-243ENST00000540387 KMT2AQ03164 3969 aa5.72□□□□□ -1.49
CTNNA1-243ENST00000540387 LY6G6CO95867 125 aa5.71□□□□□ -1.49
CTNNA1-243ENST00000540387 NBDYA0A0U1RRE5 68 aa5.71□□□□□ -1.5
CTNNA1-243ENST00000540387 UQCR11O14957 56 aa5.71□□□□□ -1.5
CTNNA1-243ENST00000540387 ACYP2P14621 99 aa5.71□□□□□ -1.5
CTNNA1-243ENST00000540387 C8orf17Q9NRJ1 99 aa5.71□□□□□ -1.5
CTNNA1-243ENST00000540387 ROMO1P60602 79 aa5.7□□□□□ -1.5
CTNNA1-243ENST00000540387 ZNF861PO60384 105 aa5.7□□□□□ -1.5
CTNNA1-243ENST00000540387 DNAH10Q8IVF4 4471 aa5.68□□□□□ -1.5
CTNNA1-243ENST00000540387 A0A096LNI7 61 aa5.67□□□□□ -1.5
CTNNA1-243ENST00000540387 IGHV6-1A0A0B4J1U7 121 aa5.67□□□□□ -1.5
CTNNA1-243ENST00000540387 Q96NJ1 140 aa5.67□□□□□ -1.5
CTNNA1-243ENST00000540387 SRRM2Q9UQ35 2752 aaKnown RBP5.65□□□□□ -1.5
CTNNA1-243ENST00000540387 MRPL34Q9BQ48 92 aaKnown RBP5.65□□□□□ -1.51
CTNNA1-243ENST00000540387 SPRR1BP22528 89 aa5.64□□□□□ -1.51
CTNNA1-243ENST00000540387 Q6ZRN7 208 aaPredicted RBP5.64□□□□□ -1.51
CTNNA1-243ENST00000540387 DMAC1Q96GE9 116 aa5.63□□□□□ -1.51
CTNNA1-243ENST00000540387 DNAH2Q9P225 4427 aa5.63□□□□□ -1.51
CTNNA1-243ENST00000540387 A0A1B0GVX0 72 aa5.62□□□□□ -1.51
CTNNA1-243ENST00000540387 KRTAP25-1Q3LHN0 102 aa5.62□□□□□ -1.51
CTNNA1-243ENST00000540387 Q5W150 140 aa5.61□□□□□ -1.51
CTNNA1-243ENST00000540387 HYDINQ4G0P3 5121 aa5.61□□□□□ -1.51
CTNNA1-243ENST00000540387 NOTCH2NLQ7Z3S9 236 aa5.6□□□□□ -1.51
CTNNA1-243ENST00000540387 SACSQ9NZJ4 4579 aa5.6□□□□□ -1.51
CTNNA1-243ENST00000540387 KRTAP13-3Q3SY46 172 aa5.6□□□□□ -1.51
CTNNA1-243ENST00000540387 FAM229AH3BQW9 127 aa5.59□□□□□ -1.51
CTNNA1-243ENST00000540387 P0C880 135 aa5.58□□□□□ -1.52
CTNNA1-243ENST00000540387 DNAH6Q9C0G6 4158 aa5.57□□□□□ -1.52
CTNNA1-243ENST00000540387 KMT2CQ8NEZ4 4911 aaKnown RBP5.57□□□□□ -1.52
CTNNA1-243ENST00000540387 A0A087WTM6 91 aa5.57□□□□□ -1.52
CTNNA1-243ENST00000540387 CDK2AP2O75956 126 aa5.56□□□□□ -1.52
CTNNA1-243ENST00000540387 KRTAP11-1Q8IUC1 163 aa5.56□□□□□ -1.52
CTNNA1-243ENST00000540387 C14orf177Q52M58 125 aa5.55□□□□□ -1.52
CTNNA1-243ENST00000540387 IGLV5-52A0A0A0MRZ9 124 aa5.54□□□□□ -1.52
CTNNA1-243ENST00000540387 DNAH17Q9UFH2 4485 aa5.54□□□□□ -1.52
CTNNA1-243ENST00000540387 IGLV7-43P04211 117 aa5.53□□□□□ -1.52
CTNNA1-243ENST00000540387 FRAS1Q86XX4 4008 aa5.52□□□□□ -1.53
CTNNA1-243ENST00000540387 IGLV9-49A0A0B4J1Y8 123 aa5.52□□□□□ -1.53
CTNNA1-243ENST00000540387 A8MUU9 505 aa5.52□□□□□ -1.53
CTNNA1-243ENST00000540387 HECTD4Q9Y4D8 3996 aa5.51□□□□□ -1.53
CTNNA1-243ENST00000540387 FAT2Q9NYQ8 4349 aa5.5□□□□□ -1.53
CTNNA1-243ENST00000540387 LINC00304Q8N9R0 145 aa5.5□□□□□ -1.53
CTNNA1-243ENST00000540387 KRTAP10-2P60368 255 aa5.49□□□□□ -1.53
CTNNA1-243ENST00000540387 RYR2Q92736 4967 aa5.49□□□□□ -1.53
CTNNA1-243ENST00000540387 DNAH11Q96DT5 4516 aa5.48□□□□□ -1.53
CTNNA1-243ENST00000540387 CHTF8P0CG12 524 aa5.48□□□□□ -1.53
CTNNA1-243ENST00000540387 LINC00483Q53H64 154 aa5.48□□□□□ -1.53
CTNNA1-243ENST00000540387 PANO1I0J062 215 aa5.46□□□□□ -1.54
CTNNA1-243ENST00000540387 PKD1P98161 4303 aa5.45□□□□□ -1.54
CTNNA1-243ENST00000540387 DNAH5Q8TE73 4624 aa5.44□□□□□ -1.54
CTNNA1-243ENST00000540387 RYR3Q15413 4870 aa5.44□□□□□ -1.54
CTNNA1-243ENST00000540387 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.44□□□□□ -1.54
CTNNA1-243ENST00000540387 CRIPTQ9P021 101 aa5.43□□□□□ -1.54
CTNNA1-243ENST00000540387 IGKV2-30P06310 120 aa5.43□□□□□ -1.54
CTNNA1-243ENST00000540387 SPINK6Q6UWN8 80 aa5.43□□□□□ -1.54
CTNNA1-243ENST00000540387 KRTAP13-1Q8IUC0 172 aa5.43□□□□□ -1.54
CTNNA1-243ENST00000540387 H0YAA0 97 aa5.42□□□□□ -1.54
CTNNA1-243ENST00000540387 FLG2Q5D862 2391 aaPredicted RBP5.42□□□□□ -1.54
CTNNA1-243ENST00000540387 SPACA4Q8TDM5 124 aa5.41□□□□□ -1.54
CTNNA1-243ENST00000540387 PKHD1P08F94 4074 aa5.41□□□□□ -1.54
CTNNA1-243ENST00000540387 A0A1B0GVY2 172 aa5.41□□□□□ -1.54
CTNNA1-243ENST00000540387 KRTAP10-1P60331 282 aa5.41□□□□□ -1.54
CTNNA1-243ENST00000540387 Q6ZSA8 131 aa5.4□□□□□ -1.55
CTNNA1-243ENST00000540387 LRP1BQ9NZR2 4599 aa5.37□□□□□ -1.55
CTNNA1-243ENST00000540387 SPINK1P00995 79 aa5.37□□□□□ -1.55
CTNNA1-243ENST00000540387 CIRBP-AS1Q8TBR5 109 aa5.36□□□□□ -1.55
CTNNA1-243ENST00000540387 DNAH8Q96JB1 4490 aa5.35□□□□□ -1.55
CTNNA1-243ENST00000540387 NDUFAF8A1L188 74 aa5.35□□□□□ -1.55
CTNNA1-243ENST00000540387 KRTAP16-1A8MUX0 517 aa5.35□□□□□ -1.55
CTNNA1-243ENST00000540387 SSBP3-AS1Q7Z2R9 100 aa5.35□□□□□ -1.55
CTNNA1-243ENST00000540387 DYNC1H1Q14204 4646 aaKnown RBP5.35□□□□□ -1.55
CTNNA1-243ENST00000540387 ANAPC11Q9NYG5 84 aa5.34□□□□□ -1.55
CTNNA1-243ENST00000540387 IGKV2D-30A0A075B6S6 120 aa5.33□□□□□ -1.56
CTNNA1-243ENST00000540387 C20orf166-AS1Q96NR2 134 aa5.33□□□□□ -1.56
CTNNA1-243ENST00000540387 SPINT4Q6UDR6 99 aa5.33□□□□□ -1.56
CTNNA1-243ENST00000540387 PSORS1C2Q9UIG4 136 aa5.32□□□□□ -1.56
CTNNA1-243ENST00000540387 A0A1B0GU33 70 aa5.29□□□□□ -1.56
CTNNA1-243ENST00000540387 TYMSOSQ8TAI1 123 aa5.28□□□□□ -1.56
CTNNA1-243ENST00000540387 APOBP04114 4563 aaKnown RBP5.26□□□□□ -1.57
CTNNA1-243ENST00000540387 SMR3BP02814 79 aaPredicted RBP5.26□□□□□ -1.57
CTNNA1-243ENST00000540387 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms