RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 MT1FP04733 61 aa4.21□□□□□ -1.74
USP28-203ENST00000537490 S100A1P23297 94 aa4.21□□□□□ -1.74
USP28-203ENST00000537490 LCE5AQ5TCM9 118 aa4.21□□□□□ -1.74
USP28-203ENST00000537490 VAMP8Q9BV40 100 aa4.2□□□□□ -1.74
USP28-203ENST00000537490 LINC00472Q9H8W2 130 aa4.2□□□□□ -1.74
USP28-203ENST00000537490 USH2AO75445 5202 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 C9orf118A6NHY6 69 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 KRTAP9-3Q9BYQ3 159 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 ORMDL1Q9P0S3 153 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 RBM12B-AS1Q9P1G2 102 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 SSPOA2VEC9 5147 aa4.19□□□□□ -1.74
USP28-203ENST00000537490 IGHV6-1A0A0B4J1U7 121 aa4.18□□□□□ -1.74
USP28-203ENST00000537490 TMEM256-PLSCR3K7ERE1 68 aa4.17□□□□□ -1.74
USP28-203ENST00000537490 DNAL4O96015 105 aa4.17□□□□□ -1.74
USP28-203ENST00000537490 TRACP01848 142 aa4.17□□□□□ -1.74
USP28-203ENST00000537490 CCKP06307 115 aa4.17□□□□□ -1.74
USP28-203ENST00000537490 KRTAP10-10P60014 251 aa4.17□□□□□ -1.74
USP28-203ENST00000537490 H3BQ85 93 aa4.16□□□□□ -1.74
USP28-203ENST00000537490 K7ERJ3 54 aa4.16□□□□□ -1.74
USP28-203ENST00000537490 PSMB2P49721 201 aa4.16□□□□□ -1.74
USP28-203ENST00000537490 A0A1B0GVX0 72 aa4.14□□□□□ -1.75
USP28-203ENST00000537490 C8orf87E5RJ46 101 aa4.14□□□□□ -1.75
USP28-203ENST00000537490 UBE2V1Q13404 147 aa4.14□□□□□ -1.75
USP28-203ENST00000537490 COX6CP09669 75 aa4.13□□□□□ -1.75
USP28-203ENST00000537490 HSD52Q0P140 79 aa4.13□□□□□ -1.75
USP28-203ENST00000537490 VPS25Q9BRG1 176 aa4.13□□□□□ -1.75
USP28-203ENST00000537490 TMA7Q9Y2S6 64 aaKnown RBP4.13□□□□□ -1.75
USP28-203ENST00000537490 SPINK7P58062 85 aa4.12□□□□□ -1.75
USP28-203ENST00000537490 ZCCHC13Q8WW36 166 aaKnown RBP4.12□□□□□ -1.75
USP28-203ENST00000537490 RBM3P98179 157 aaKnown RBP4.11□□□□□ -1.75
USP28-203ENST00000537490 PYY3Q5JQD4 70 aa4.11□□□□□ -1.75
USP28-203ENST00000537490 FCGBPQ9Y6R7 5405 aaPredicted RBP4.1□□□□□ -1.75
USP28-203ENST00000537490 C21orf62-AS1Q17RA5 79 aa4.1□□□□□ -1.75
USP28-203ENST00000537490 MTURNQ8N3F0 131 aa4.1□□□□□ -1.75
USP28-203ENST00000537490 DSCR8Q96T75 97 aa4.1□□□□□ -1.75
USP28-203ENST00000537490 J3KT08 172 aa4.08□□□□□ -1.76
USP28-203ENST00000537490 BAALC-AS2P0C853 105 aa4.08□□□□□ -1.76
USP28-203ENST00000537490 SCGB1C2P0DMR2 95 aa4.08□□□□□ -1.76
USP28-203ENST00000537490 Q6ZQT0 140 aa4.08□□□□□ -1.76
USP28-203ENST00000537490 Q8N9P0 234 aaPredicted RBP4.08□□□□□ -1.76
USP28-203ENST00000537490 C9JAW5 83 aa4.07□□□□□ -1.76
USP28-203ENST00000537490 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
USP28-203ENST00000537490 C8orf17Q9NRJ1 99 aa4.06□□□□□ -1.76
USP28-203ENST00000537490 UQCR10Q9UDW1 63 aa4.06□□□□□ -1.76
USP28-203ENST00000537490 NDUFB1O75438 58 aa4.05□□□□□ -1.76
USP28-203ENST00000537490 WFDC13Q8IUB5 93 aa4.05□□□□□ -1.76
USP28-203ENST00000537490 IGKV3D-7A0A0C4DH55 119 aa4.04□□□□□ -1.76
USP28-203ENST00000537490 A8MWP4 228 aa4.04□□□□□ -1.76
USP28-203ENST00000537490 LYRM7Q5U5X0 104 aa4.03□□□□□ -1.76
USP28-203ENST00000537490 KRTAP5-3Q6L8H2 238 aa4.03□□□□□ -1.76
USP28-203ENST00000537490 LINC00846Q9NV44 126 aa4.03□□□□□ -1.76
USP28-203ENST00000537490 Q6ZVQ6 151 aa4.01□□□□□ -1.77
USP28-203ENST00000537490 MACF1Q9UPN3 7388 aaKnown RBP4.01□□□□□ -1.77
USP28-203ENST00000537490 LOC110117498A0A087WWA1 95 aa4□□□□□ -1.77
USP28-203ENST00000537490 JMJD7-PLA2G4BH0Y9G9 81 aa4□□□□□ -1.77
USP28-203ENST00000537490 PRR15Q8IV56 129 aa4□□□□□ -1.77
USP28-203ENST00000537490 NAA38Q9BRA0 125 aaKnown RBP4□□□□□ -1.77
USP28-203ENST00000537490 A0A1B0GW54 56 aa3.99□□□□□ -1.77
USP28-203ENST00000537490 ATXN8Q156A1 80 aa3.99□□□□□ -1.77
USP28-203ENST00000537490 KRTAP3-1Q9BYR8 98 aa3.99□□□□□ -1.77
USP28-203ENST00000537490 MMP24-AS1A0A0U1RRL7 71 aa3.98□□□□□ -1.77
USP28-203ENST00000537490 H1FX-AS1Q4G0G2 97 aa3.98□□□□□ -1.77
USP28-203ENST00000537490 MRPL34Q9BQ48 92 aaKnown RBP3.98□□□□□ -1.77
USP28-203ENST00000537490 C14orf132Q9NPU4 83 aa3.98□□□□□ -1.77
USP28-203ENST00000537490 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
USP28-203ENST00000537490 PDE6GP18545 87 aa3.97□□□□□ -1.77
USP28-203ENST00000537490 NREPQ16612 68 aa3.97□□□□□ -1.77
USP28-203ENST00000537490 TMEM254Q8TBM7 123 aa3.97□□□□□ -1.77
USP28-203ENST00000537490 hDV103S1A0JD37 113 aa3.94□□□□□ -1.78
USP28-203ENST00000537490 NDUFS5O43920 106 aa3.94□□□□□ -1.78
USP28-203ENST00000537490 KRTAP6-3Q3LI67 103 aa3.94□□□□□ -1.78
USP28-203ENST00000537490 K7EQZ3 153 aa3.93□□□□□ -1.78
USP28-203ENST00000537490 M0R143 59 aa3.93□□□□□ -1.78
USP28-203ENST00000537490 Q5W150 140 aa3.93□□□□□ -1.78
USP28-203ENST00000537490 IGKV2D-30A0A075B6S6 120 aa3.92□□□□□ -1.78
USP28-203ENST00000537490 IGKV2-30P06310 120 aa3.92□□□□□ -1.78
USP28-203ENST00000537490 C7orf65Q6ZTY9 151 aa3.9□□□□□ -1.79
USP28-203ENST00000537490 KRTAP23-1A1A580 65 aa3.89□□□□□ -1.79
USP28-203ENST00000537490 BPY2O14599 106 aa3.88□□□□□ -1.79
USP28-203ENST00000537490 C4orf26Q17RF5 130 aa3.88□□□□□ -1.79
USP28-203ENST00000537490 Q8N9L7 120 aa3.87□□□□□ -1.79
USP28-203ENST00000537490 HCG22E2RYF7 251 aa3.86□□□□□ -1.79
USP28-203ENST00000537490 H3BT86 120 aa3.85□□□□□ -1.79
USP28-203ENST00000537490 BATFQ16520 125 aa3.85□□□□□ -1.79
USP28-203ENST00000537490 C5orf47Q569G3 176 aa3.85□□□□□ -1.79
USP28-203ENST00000537490 CASC2Q6XLA1 102 aa3.85□□□□□ -1.79
USP28-203ENST00000537490 MT1BP07438 61 aa3.84□□□□□ -1.79
USP28-203ENST00000537490 FAM236AA0A1B0GUQ0 79 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 FAM236BA0A1B0GV22 79 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 A6NN06 94 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 TSTD3H0UI37 97 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 TAX1BP3O14907 124 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 CXCL6P80162 114 aa3.82□□□□□ -1.8
USP28-203ENST00000537490 A0A1W2PPM0 123 aa3.81□□□□□ -1.8
USP28-203ENST00000537490 SMIM6P0DI80 62 aa3.81□□□□□ -1.8
USP28-203ENST00000537490 KRTAP19-8Q3LI54 63 aa3.8□□□□□ -1.8
USP28-203ENST00000537490 Q5VV11 94 aa3.8□□□□□ -1.8
USP28-203ENST00000537490 CSAG1Q6PB30 78 aa3.79□□□□□ -1.8
USP28-203ENST00000537490 SPRR2GQ9BYE4 73 aa3.79□□□□□ -1.8
USP28-203ENST00000537490 S4R3F8 94 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms