RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MPLKIPQ8TAP9 179 aa5.4□□□□□ -1.54
CD44-227ENST00000528086 VPS25Q9BRG1 176 aa5.4□□□□□ -1.54
CD44-227ENST00000528086 C21orf62-AS1Q17RA5 79 aa5.39□□□□□ -1.55
CD44-227ENST00000528086 Q6ZQT0 140 aa5.39□□□□□ -1.55
CD44-227ENST00000528086 IGHV6-1A0A0B4J1U7 121 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 A0A1B0GVX0 72 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 HRES1P13985 223 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 KRTAP9-8Q9BYQ0 159 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 KRTAP4-8Q9BYQ9 185 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 CRCT1Q9UGL9 99 aa5.38□□□□□ -1.55
CD44-227ENST00000528086 M0R2T5 61 aa5.37□□□□□ -1.55
CD44-227ENST00000528086 ATXN8Q156A1 80 aa5.37□□□□□ -1.55
CD44-227ENST00000528086 DSCR8Q96T75 97 aa5.37□□□□□ -1.55
CD44-227ENST00000528086 LOC110117498A0A087WWA1 95 aa5.36□□□□□ -1.55
CD44-227ENST00000528086 C9JAW5 83 aa5.36□□□□□ -1.55
CD44-227ENST00000528086 TAX1BP3O14907 124 aa5.34□□□□□ -1.55
CD44-227ENST00000528086 C14orf132Q9NPU4 83 aa5.34□□□□□ -1.55
CD44-227ENST00000528086 IGKV3D-7A0A0C4DH55 119 aa5.32□□□□□ -1.56
CD44-227ENST00000528086 A0A1B0GW54 56 aa5.32□□□□□ -1.56
CD44-227ENST00000528086 C8orf87E5RJ46 101 aa5.32□□□□□ -1.56
CD44-227ENST00000528086 BATFQ16520 125 aa5.32□□□□□ -1.56
CD44-227ENST00000528086 LYRM7Q5U5X0 104 aa5.32□□□□□ -1.56
CD44-227ENST00000528086 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.31□□□□□ -1.56
CD44-227ENST00000528086 JMJD7-PLA2G4BH0Y9G9 81 aa5.31□□□□□ -1.56
CD44-227ENST00000528086 MTURNQ8N3F0 131 aa5.31□□□□□ -1.56
CD44-227ENST00000528086 Q8N9P0 234 aaPredicted RBP5.31□□□□□ -1.56
CD44-227ENST00000528086 C9orf118A6NHY6 69 aa5.3□□□□□ -1.56
CD44-227ENST00000528086 A8MWP4 228 aa5.29□□□□□ -1.56
CD44-227ENST00000528086 J3KT08 172 aa5.29□□□□□ -1.56
CD44-227ENST00000528086 C8orf17Q9NRJ1 99 aa5.29□□□□□ -1.56
CD44-227ENST00000528086 TRBV20-1A0A075B6N2 111 aa5.28□□□□□ -1.56
CD44-227ENST00000528086 MT2AP02795 61 aa5.28□□□□□ -1.56
CD44-227ENST00000528086 PDE6GP18545 87 aa5.28□□□□□ -1.56
CD44-227ENST00000528086 COL5A1-AS1Q5SY13 56 aa5.28□□□□□ -1.56
CD44-227ENST00000528086 ZCCHC13Q8WW36 166 aaKnown RBP5.28□□□□□ -1.56
CD44-227ENST00000528086 A0A1W2PPM0 123 aa5.27□□□□□ -1.57
CD44-227ENST00000528086 USH2AO75445 5202 aa5.27□□□□□ -1.57
CD44-227ENST00000528086 MMP24-AS1A0A0U1RRL7 71 aa5.25□□□□□ -1.57
CD44-227ENST00000528086 MT1FP04733 61 aa5.25□□□□□ -1.57
CD44-227ENST00000528086 PRR15Q8IV56 129 aa5.25□□□□□ -1.57
CD44-227ENST00000528086 H3BT86 120 aa5.24□□□□□ -1.57
CD44-227ENST00000528086 SPINK7P58062 85 aa5.24□□□□□ -1.57
CD44-227ENST00000528086 Q6ZVQ6 151 aa5.23□□□□□ -1.57
CD44-227ENST00000528086 K7EQZ3 153 aa5.22□□□□□ -1.57
CD44-227ENST00000528086 NDUFB1O75438 58 aa5.22□□□□□ -1.57
CD44-227ENST00000528086 SSPOA2VEC9 5147 aa5.22□□□□□ -1.57
CD44-227ENST00000528086 NREPQ16612 68 aa5.21□□□□□ -1.58
CD44-227ENST00000528086 KRTAP9-3Q9BYQ3 159 aa5.21□□□□□ -1.58
CD44-227ENST00000528086 PRO0461Q9UI25 63 aa5.21□□□□□ -1.58
CD44-227ENST00000528086 FAM236DA0A1B0GTK5 79 aa5.2□□□□□ -1.58
CD44-227ENST00000528086 FAM236CP0DP71 79 aa5.2□□□□□ -1.58
CD44-227ENST00000528086 RBM12B-AS1Q9P1G2 102 aa5.2□□□□□ -1.58
CD44-227ENST00000528086 Q5W150 140 aa5.18□□□□□ -1.58
CD44-227ENST00000528086 TMEM254Q8TBM7 123 aa5.18□□□□□ -1.58
CD44-227ENST00000528086 MRPL34Q9BQ48 92 aaKnown RBP5.18□□□□□ -1.58
CD44-227ENST00000528086 SPCS1Q9Y6A9 102 aa5.18□□□□□ -1.58
CD44-227ENST00000528086 WFDC13Q8IUB5 93 aa5.16□□□□□ -1.58
CD44-227ENST00000528086 Q8N9L7 120 aa5.16□□□□□ -1.58
CD44-227ENST00000528086 hDV103S1A0JD37 113 aa5.14□□□□□ -1.59
CD44-227ENST00000528086 GTF2H5Q6ZYL4 71 aa5.14□□□□□ -1.59
CD44-227ENST00000528086 A0A1B0GV90 55 aa5.13□□□□□ -1.59
CD44-227ENST00000528086 BPY2O14599 106 aa5.13□□□□□ -1.59
CD44-227ENST00000528086 LINC00846Q9NV44 126 aa5.12□□□□□ -1.59
CD44-227ENST00000528086 K7EP34 96 aa5.11□□□□□ -1.59
CD44-227ENST00000528086 KRTAP10-10P60014 251 aa5.11□□□□□ -1.59
CD44-227ENST00000528086 FCGBPQ9Y6R7 5405 aaPredicted RBP5.09□□□□□ -1.59
CD44-227ENST00000528086 LCE3BQ5TA77 95 aa5.07□□□□□ -1.6
CD44-227ENST00000528086 KRTAP4-12Q9BQ66 201 aa5.07□□□□□ -1.6
CD44-227ENST00000528086 NDUFS5O43920 106 aa5.06□□□□□ -1.6
CD44-227ENST00000528086 CASC2Q6XLA1 102 aa5.06□□□□□ -1.6
CD44-227ENST00000528086 KRTAP19-1Q8IUB9 90 aa5.06□□□□□ -1.6
CD44-227ENST00000528086 IGKV2D-30A0A075B6S6 120 aa5.05□□□□□ -1.6
CD44-227ENST00000528086 HCG22E2RYF7 251 aa5.05□□□□□ -1.6
CD44-227ENST00000528086 F8W1H4 67 aa5.05□□□□□ -1.6
CD44-227ENST00000528086 IGKV2-30P06310 120 aa5.05□□□□□ -1.6
CD44-227ENST00000528086 H1FX-AS1Q4G0G2 97 aa5.04□□□□□ -1.6
CD44-227ENST00000528086 KRTAP3-1Q9BYR8 98 aa5.04□□□□□ -1.6
CD44-227ENST00000528086 KRTAP9-9Q9BYP9 154 aa5.03□□□□□ -1.6
CD44-227ENST00000528086 KRTAP9-4Q9BYQ2 154 aa5.03□□□□□ -1.6
CD44-227ENST00000528086 ETDBQ3ZM63 59 aa5.01□□□□□ -1.61
CD44-227ENST00000528086 C7orf65Q6ZTY9 151 aa5.01□□□□□ -1.61
CD44-227ENST00000528086 C4orf26Q17RF5 130 aa5□□□□□ -1.61
CD44-227ENST00000528086 UBL5Q9BZL1 73 aa4.99□□□□□ -1.61
CD44-227ENST00000528086 CXCL6P80162 114 aa4.98□□□□□ -1.61
CD44-227ENST00000528086 KRTAP4-8A0A0G2JLE6 195 aa4.97□□□□□ -1.61
CD44-227ENST00000528086 KRTAP19-6Q3LI70 58 aa4.97□□□□□ -1.61
CD44-227ENST00000528086 KRTAP9-7A8MTY7 169 aa4.94□□□□□ -1.62
CD44-227ENST00000528086 J3QR89 54 aa4.94□□□□□ -1.62
CD44-227ENST00000528086 K7ERU9 68 aa4.91□□□□□ -1.62
CD44-227ENST00000528086 A0A087WVE0 104 aa4.88□□□□□ -1.63
CD44-227ENST00000528086 C5orf47Q569G3 176 aa4.88□□□□□ -1.63
CD44-227ENST00000528086 C1orf64Q8NEQ6 169 aa4.88□□□□□ -1.63
CD44-227ENST00000528086 ACYP1P07311 99 aa4.87□□□□□ -1.63
CD44-227ENST00000528086 LCA10Q71F78 164 aa4.87□□□□□ -1.63
CD44-227ENST00000528086 TP53AIP1Q9HCN2 124 aa4.87□□□□□ -1.63
CD44-227ENST00000528086 CYP4F30PQ9H0H9 118 aa4.86□□□□□ -1.63
CD44-227ENST00000528086 FAM240AA0A1B0GVK7 77 aa4.85□□□□□ -1.63
CD44-227ENST00000528086 MT1BP07438 61 aa4.84□□□□□ -1.63
CD44-227ENST00000528086 S4R3F8 94 aa4.84□□□□□ -1.63
CD44-227ENST00000528086 MACF1Q9UPN3 7388 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms