RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 RETNLBQ9BQ08 111 aa5.38□□□□□ -1.55
HDAC3-215ENST00000519474 Q9BRP9 147 aa5.37□□□□□ -1.55
HDAC3-215ENST00000519474 LINC00483Q53H64 154 aa5.36□□□□□ -1.55
HDAC3-215ENST00000519474 SPAG11AQ6PDA7 123 aa5.36□□□□□ -1.55
HDAC3-215ENST00000519474 TTTY13Q9BZ97 58 aa5.36□□□□□ -1.55
HDAC3-215ENST00000519474 ZNF706Q9Y5V0 76 aaPredicted RBP5.36□□□□□ -1.55
HDAC3-215ENST00000519474 hDV103S1A0JD37 113 aa5.35□□□□□ -1.55
HDAC3-215ENST00000519474 LINC00308Q8TCZ7 52 aa5.35□□□□□ -1.55
HDAC3-215ENST00000519474 RNF213Q63HN8 5207 aa5.35□□□□□ -1.55
HDAC3-215ENST00000519474 ZNF815PA8K554 130 aa5.34□□□□□ -1.55
HDAC3-215ENST00000519474 Q6ZRX8 168 aa5.34□□□□□ -1.55
HDAC3-215ENST00000519474 LIMD2Q9BT23 127 aa5.34□□□□□ -1.55
HDAC3-215ENST00000519474 IGLV7-46A0A075B6I9 117 aa5.33□□□□□ -1.56
HDAC3-215ENST00000519474 Q8NBF4 154 aa5.33□□□□□ -1.56
HDAC3-215ENST00000519474 TRAV23DV6A0A075B6W5 121 aa5.32□□□□□ -1.56
HDAC3-215ENST00000519474 TRAV22A0A0B4J277 110 aa5.32□□□□□ -1.56
HDAC3-215ENST00000519474 SSBP3-AS1Q7Z2R9 100 aa5.32□□□□□ -1.56
HDAC3-215ENST00000519474 Q1RN00 199 aa5.31□□□□□ -1.56
HDAC3-215ENST00000519474 CDC42SE1Q9NRR8 79 aa5.31□□□□□ -1.56
HDAC3-215ENST00000519474 HCG22E2RYF7 251 aa5.3□□□□□ -1.56
HDAC3-215ENST00000519474 DNAL4O96015 105 aa5.3□□□□□ -1.56
HDAC3-215ENST00000519474 SPINK1P00995 79 aa5.3□□□□□ -1.56
HDAC3-215ENST00000519474 TPRXLQ17RH7 258 aa5.3□□□□□ -1.56
HDAC3-215ENST00000519474 ST20-AS1Q8NBB2 130 aa5.3□□□□□ -1.56
HDAC3-215ENST00000519474 IGLV9-49A0A0B4J1Y8 123 aa5.29□□□□□ -1.56
HDAC3-215ENST00000519474 MOBPQ13875 183 aa5.29□□□□□ -1.56
HDAC3-215ENST00000519474 OBSCN-AS1Q96MR7 158 aa5.29□□□□□ -1.56
HDAC3-215ENST00000519474 TRBV7-4A0A0J9YYF1 115 aa5.28□□□□□ -1.56
HDAC3-215ENST00000519474 Q5VV11 94 aa5.28□□□□□ -1.56
HDAC3-215ENST00000519474 IGKV3D-7A0A0C4DH55 119 aa5.27□□□□□ -1.57
HDAC3-215ENST00000519474 SPRR1BP22528 89 aa5.27□□□□□ -1.57
HDAC3-215ENST00000519474 MUSTN1Q8IVN3 82 aa5.27□□□□□ -1.57
HDAC3-215ENST00000519474 A0A087WVE0 104 aa5.26□□□□□ -1.57
HDAC3-215ENST00000519474 Q8N377 158 aa5.26□□□□□ -1.57
HDAC3-215ENST00000519474 RPS29P62273 56 aaKnown RBP5.25□□□□□ -1.57
HDAC3-215ENST00000519474 DHRS4-AS1Q9P1J3 65 aa5.25□□□□□ -1.57
HDAC3-215ENST00000519474 BAALC-AS2P0C853 105 aa5.24□□□□□ -1.57
HDAC3-215ENST00000519474 COX7BP24311 80 aa5.24□□□□□ -1.57
HDAC3-215ENST00000519474 ELOF1P60002 83 aaKnown RBP5.24□□□□□ -1.57
HDAC3-215ENST00000519474 KRTAP13-3Q3SY46 172 aa5.24□□□□□ -1.57
HDAC3-215ENST00000519474 SPTSSBQ8NFR3 76 aa5.24□□□□□ -1.57
HDAC3-215ENST00000519474 LOC101927531A0A1B0GV80 90 aa5.23□□□□□ -1.57
HDAC3-215ENST00000519474 TMEM254Q8TBM7 123 aa5.23□□□□□ -1.57
HDAC3-215ENST00000519474 LINC00846Q9NV44 126 aa5.23□□□□□ -1.57
HDAC3-215ENST00000519474 CHKB-CPT1BH3BT56 60 aa5.21□□□□□ -1.58
HDAC3-215ENST00000519474 LINC01547P58512 204 aaPredicted RBP5.21□□□□□ -1.58
HDAC3-215ENST00000519474 SMIM29Q86T20 159 aa5.21□□□□□ -1.58
HDAC3-215ENST00000519474 DEFB105AQ8NG35 78 aa5.21□□□□□ -1.58
HDAC3-215ENST00000519474 SNURFQ9Y675 71 aa5.21□□□□□ -1.58
HDAC3-215ENST00000519474 MUC2Q02817 5179 aa5.21□□□□□ -1.58
HDAC3-215ENST00000519474 SMIM11BQ8TCY0 68 aa5.2□□□□□ -1.58
HDAC3-215ENST00000519474 FAM218AQ96MZ4 157 aa5.2□□□□□ -1.58
HDAC3-215ENST00000519474 UBL5Q9BZL1 73 aa5.19□□□□□ -1.58
HDAC3-215ENST00000519474 CASC2Q6XLA1 102 aa5.18□□□□□ -1.58
HDAC3-215ENST00000519474 IGLV5-48A0A075B6I7 105 aa5.17□□□□□ -1.58
HDAC3-215ENST00000519474 JMJD7-PLA2G4BH0Y9G9 81 aa5.17□□□□□ -1.58
HDAC3-215ENST00000519474 LCE2AQ5TA79 106 aaPredicted RBP5.17□□□□□ -1.58
HDAC3-215ENST00000519474 KRTAP4-1Q9BYQ7 146 aa5.17□□□□□ -1.58
HDAC3-215ENST00000519474 A0A0G2JQZ4 141 aa5.16□□□□□ -1.58
HDAC3-215ENST00000519474 H7C2G1 150 aa5.16□□□□□ -1.58
HDAC3-215ENST00000519474 C1orf64Q8NEQ6 169 aa5.16□□□□□ -1.58
HDAC3-215ENST00000519474 MUC17Q685J3 4493 aa5.16□□□□□ -1.58
HDAC3-215ENST00000519474 KRTAP16-1A8MUX0 517 aa5.15□□□□□ -1.59
HDAC3-215ENST00000519474 LINC00575Q6W349 94 aa5.15□□□□□ -1.59
HDAC3-215ENST00000519474 NREPQ16612 68 aa5.14□□□□□ -1.59
HDAC3-215ENST00000519474 XP32Q5T750 250 aa5.14□□□□□ -1.59
HDAC3-215ENST00000519474 A6NED7 52 aa5.13□□□□□ -1.59
HDAC3-215ENST00000519474 NDUFB1O75438 58 aa5.12□□□□□ -1.59
HDAC3-215ENST00000519474 Q8N9P0 234 aaPredicted RBP5.12□□□□□ -1.59
HDAC3-215ENST00000519474 H0YGX0 51 aa5.11□□□□□ -1.59
HDAC3-215ENST00000519474 C9orf92A6NGG3 77 aa5.09□□□□□ -1.59
HDAC3-215ENST00000519474 Q6ZQY7 126 aa5.09□□□□□ -1.59
HDAC3-215ENST00000519474 PDE6GP18545 87 aa5.08□□□□□ -1.6
HDAC3-215ENST00000519474 ROMO1P60602 79 aa5.08□□□□□ -1.6
HDAC3-215ENST00000519474 FAT4Q6V0I7 4981 aa5.08□□□□□ -1.6
HDAC3-215ENST00000519474 IGLV8-61A0A075B6I0 122 aa5.07□□□□□ -1.6
HDAC3-215ENST00000519474 A8MU10 97 aa5.07□□□□□ -1.6
HDAC3-215ENST00000519474 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.06□□□□□ -1.6
HDAC3-215ENST00000519474 PRR15LQ9BU68 103 aa5.06□□□□□ -1.6
HDAC3-215ENST00000519474 OCR1Q9BZK8 76 aa5.06□□□□□ -1.6
HDAC3-215ENST00000519474 C14orf132Q9NPU4 83 aa5.06□□□□□ -1.6
HDAC3-215ENST00000519474 H3BQ85 93 aa5.05□□□□□ -1.6
HDAC3-215ENST00000519474 PCOTHQ58A44 107 aa5.05□□□□□ -1.6
HDAC3-215ENST00000519474 IGFL1Q6UW32 110 aa5.05□□□□□ -1.6
HDAC3-215ENST00000519474 SPANXA2-OT1Q8N9U9 137 aa5.05□□□□□ -1.6
HDAC3-215ENST00000519474 BPY2O14599 106 aa5.04□□□□□ -1.6
HDAC3-215ENST00000519474 LCE2CQ5TA81 110 aa5.04□□□□□ -1.6
HDAC3-215ENST00000519474 ZCCHC13Q8WW36 166 aaKnown RBP5.04□□□□□ -1.6
HDAC3-215ENST00000519474 KRTAP9-2Q9BYQ4 174 aa5.03□□□□□ -1.6
HDAC3-215ENST00000519474 LOC110117498A0A087WWA1 95 aa5.02□□□□□ -1.61
HDAC3-215ENST00000519474 KRTAP19-2Q3LHN2 52 aa5.02□□□□□ -1.61
HDAC3-215ENST00000519474 ORMDL1Q9P0S3 153 aa5.02□□□□□ -1.61
HDAC3-215ENST00000519474 LINC01558Q9Y6Z2 57 aa5.02□□□□□ -1.61
HDAC3-215ENST00000519474 PRAC1Q96KF2 57 aa5.01□□□□□ -1.61
HDAC3-215ENST00000519474 A0A087WSZ3 146 aa4.99□□□□□ -1.61
HDAC3-215ENST00000519474 K7ERS5 55 aa4.99□□□□□ -1.61
HDAC3-215ENST00000519474 RPL37P61927 97 aaKnown RBP4.98□□□□□ -1.61
HDAC3-215ENST00000519474 LINC00208Q96KT6 92 aa4.97□□□□□ -1.61
HDAC3-215ENST00000519474 H3BPC8 53 aa4.94□□□□□ -1.62
HDAC3-215ENST00000519474 MIR22HGQ0VDD5 57 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms