RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FRYLO94915 3013 aa-0.68□□□□□ -2.52
NUP54-215ENST00000514313 SMR3BP02814 79 aaPredicted RBP-0.68□□□□□ -2.52
NUP54-215ENST00000514313 ACYP1P07311 99 aa-0.68□□□□□ -2.52
NUP54-215ENST00000514313 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.68□□□□□ -2.52
NUP54-215ENST00000514313 TMEM131LA2VDJ0 1609 aa-0.68□□□□□ -2.52
NUP54-215ENST00000514313 MGAQ8IWI9 3026 aa-0.68□□□□□ -2.52
NUP54-215ENST00000514313 CDC42BPAQ5VT25 1732 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 MMP24-AS1A0A0U1RRL7 71 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 LINC01546A6NGU7 62 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 NDUFA3O95167 84 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 C3orf79P0CE67 100 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 PRO3102Q9H379 93 aa-0.69□□□□□ -2.52
NUP54-215ENST00000514313 DEFB4AO15263 64 aa-0.7□□□□□ -2.52
NUP54-215ENST00000514313 LINC00158P58513 81 aa-0.7□□□□□ -2.52
NUP54-215ENST00000514313 SUPT6HQ7KZ85 1726 aaKnown RBP-0.7□□□□□ -2.52
NUP54-215ENST00000514313 CRYBG3Q68DQ2 2970 aa-0.7□□□□□ -2.52
NUP54-215ENST00000514313 RGPD8O14715 1765 aaPredicted RBP-0.7□□□□□ -2.52
NUP54-215ENST00000514313 RGPD5Q99666 1765 aa-0.7□□□□□ -2.52
NUP54-215ENST00000514313 C4AP0C0L4 1744 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 C4BP0C0L5 1744 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 MAGI3Q5TCQ9 1506 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 CENPEQ02224 2701 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 VPS13CQ709C8 3753 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 KIF14Q15058 1648 aa-0.71□□□□□ -2.52
NUP54-215ENST00000514313 SPEGQ15772 3267 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 TIAM2Q8IVF5 1701 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 PPLO60437 1756 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 EP400Q96L91 3159 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 WDFY3Q8IZQ1 3526 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 RPS29P62273 56 aaKnown RBP-0.72□□□□□ -2.52
NUP54-215ENST00000514313 KRTAP8-1Q8IUC2 63 aa-0.72□□□□□ -2.52
NUP54-215ENST00000514313 CEP350Q5VT06 3117 aa-0.73□□□□□ -2.53
NUP54-215ENST00000514313 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.73□□□□□ -2.53
NUP54-215ENST00000514313 IFI6P09912 130 aa-0.73□□□□□ -2.53
NUP54-215ENST00000514313 IAPPP10997 89 aa-0.73□□□□□ -2.53
NUP54-215ENST00000514313 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.73□□□□□ -2.53
NUP54-215ENST00000514313 WDFY4Q6ZS81 3184 aa-0.73□□□□□ -2.53
NUP54-215ENST00000514313 PLXNC1O60486 1568 aa-0.74□□□□□ -2.53
NUP54-215ENST00000514313 SMARCA2P51531 1590 aa-0.74□□□□□ -2.53
NUP54-215ENST00000514313 USP32Q8NFA0 1604 aa-0.74□□□□□ -2.53
NUP54-215ENST00000514313 SPART-AS1P0CW21 52 aa-0.74□□□□□ -2.53
NUP54-215ENST00000514313 NOP10Q9NPE3 64 aaKnown RBP-0.74□□□□□ -2.53
NUP54-215ENST00000514313 IGLV5-48A0A075B6I7 105 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 DEFB130BP0DP73 79 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 DEFB130AP0DP74 79 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 UACAQ9BZF9 1416 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 DNAH14Q0VDD8 3507 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 DEPDC5O75140 1603 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 SCN11AQ9UI33 1791 aa-0.75□□□□□ -2.53
NUP54-215ENST00000514313 H3BUA1 57 aa-0.76□□□□□ -2.53
NUP54-215ENST00000514313 ANKRD36CQ5JPF3 1778 aa-0.76□□□□□ -2.53
NUP54-215ENST00000514313 MUC3AQ02505 3323 aa-0.76□□□□□ -2.53
NUP54-215ENST00000514313 CFAP47Q6ZTR5 3102 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 TOGARAM1Q9Y4F4 1720 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 ZNF831Q5JPB2 1677 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 KANTRA0A1W2PQU2 76 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 A8MTW9 85 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 LYNX1G3V0Z9 82 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 MT1FP04733 61 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 BVES-AS1Q5T3Y7 98 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 PCNTO95613 3336 aa-0.77□□□□□ -2.53
NUP54-215ENST00000514313 M0QY20 66 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 M0QZ58 72 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 NDUFB1O75438 58 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 WT1-ASQ06250 92 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 DEFB136Q30KP8 78 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 SZT2Q5T011 3432 aa-0.78□□□□□ -2.53
NUP54-215ENST00000514313 POLR1AO95602 1720 aaPredicted RBP-0.78□□□□□ -2.53
NUP54-215ENST00000514313 MAP3K4Q9Y6R4 1608 aa-0.78□□□□□ -2.54
NUP54-215ENST00000514313 LTN1O94822 1766 aa-0.79□□□□□ -2.54
NUP54-215ENST00000514313 LY75O60449 1722 aa-0.79□□□□□ -2.54
NUP54-215ENST00000514313 PARP4Q9UKK3 1724 aaKnown RBP-0.79□□□□□ -2.54
NUP54-215ENST00000514313 WIZO95785 1651 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 MRPL33O75394 65 aaKnown RBP-0.8□□□□□ -2.54
NUP54-215ENST00000514313 NESP48681 1621 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 NWD1Q149M9 1564 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 THOC2Q8NI27 1593 aaKnown RBP-0.8□□□□□ -2.54
NUP54-215ENST00000514313 MAST1Q9Y2H9 1570 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 KIAA0586Q9BVV6 1533 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 NCOA2Q15596 1464 aa-0.8□□□□□ -2.54
NUP54-215ENST00000514313 FCER1GP30273 86 aa-0.81□□□□□ -2.54
NUP54-215ENST00000514313 MINOS1Q5TGZ0 78 aa-0.81□□□□□ -2.54
NUP54-215ENST00000514313 ERVK-7P63135 1459 aa-0.81□□□□□ -2.54
NUP54-215ENST00000514313 LOC400499M0QZD8 3231 aa-0.82□□□□□ -2.54
NUP54-215ENST00000514313 VCANP13611 3396 aa-0.82□□□□□ -2.54
NUP54-215ENST00000514313 IFI27P40305 119 aaPredicted RBP-0.82□□□□□ -2.54
NUP54-215ENST00000514313 LEAP2Q969E1 77 aa-0.82□□□□□ -2.54
NUP54-215ENST00000514313 UNC80Q8N2C7 3258 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 KIF1AQ12756 1690 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 PLCH1Q4KWH8 1693 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 LCE6AA0A183 80 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 A0A1B0GUL6 1792 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 DNMBPQ6XZF7 1577 aa-0.83□□□□□ -2.54
NUP54-215ENST00000514313 MKI67P46013 3256 aaKnown RBP-0.84□□□□□ -2.54
NUP54-215ENST00000514313 SFTA3P0C7M3 94 aa-0.84□□□□□ -2.54
NUP54-215ENST00000514313 ABRACLQ9P1F3 81 aa-0.84□□□□□ -2.54
NUP54-215ENST00000514313 DDX60LQ5H9U9 1706 aaKnown RBP-0.84□□□□□ -2.54
NUP54-215ENST00000514313 DOT1LQ8TEK3 1739 aa-0.84□□□□□ -2.54
NUP54-215ENST00000514313 USP34Q70CQ2 3546 aa-0.84□□□□□ -2.54
NUP54-215ENST00000514313 URB2Q14146 1524 aaKnown RBP-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms