RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ERC2-IT1O76042 136 aa4.98□□□□□ -1.61
LIMCH1-219ENST00000514096 C7orf33Q8WU49 177 aa4.97□□□□□ -1.61
LIMCH1-219ENST00000514096 A0A1W2PNN7 141 aa4.97□□□□□ -1.61
LIMCH1-219ENST00000514096 C1orf137Q5JT78 98 aa4.97□□□□□ -1.61
LIMCH1-219ENST00000514096 IGHV3OR16-9A0A0B4J2B5 98 aa4.97□□□□□ -1.61
LIMCH1-219ENST00000514096 SMIM1B2RUZ4 78 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 PDE6GP18545 87 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 COA5Q86WW8 74 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 OBSCN-AS1Q96MR7 158 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 C6orf48Q9UBA6 75 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 HERC1Q15751 4861 aa4.96□□□□□ -1.62
LIMCH1-219ENST00000514096 FAM104AQ969W3 186 aa4.95□□□□□ -1.62
LIMCH1-219ENST00000514096 VPS13BQ7Z7G8 4022 aa4.95□□□□□ -1.62
LIMCH1-219ENST00000514096 CDK2AP2O75956 126 aa4.95□□□□□ -1.62
LIMCH1-219ENST00000514096 HSPG2P98160 4391 aa4.94□□□□□ -1.62
LIMCH1-219ENST00000514096 KRTAP16-1A8MUX0 517 aa4.94□□□□□ -1.62
LIMCH1-219ENST00000514096 LRP1Q07954 4544 aaKnown RBP4.94□□□□□ -1.62
LIMCH1-219ENST00000514096 IGKV4-1P06312 121 aa4.94□□□□□ -1.62
LIMCH1-219ENST00000514096 ANAPC11Q9NYG5 84 aa4.93□□□□□ -1.62
LIMCH1-219ENST00000514096 SPINT4Q6UDR6 99 aa4.93□□□□□ -1.62
LIMCH1-219ENST00000514096 CRIPTQ9P021 101 aa4.93□□□□□ -1.62
LIMCH1-219ENST00000514096 GVQW2A0A096LPI5 108 aaPredicted RBP4.92□□□□□ -1.62
LIMCH1-219ENST00000514096 IGLV8-61A0A075B6I0 122 aa4.92□□□□□ -1.62
LIMCH1-219ENST00000514096 H0Y9P7 68 aa4.9□□□□□ -1.62
LIMCH1-219ENST00000514096 FAT3Q8TDW7 4589 aa4.9□□□□□ -1.63
LIMCH1-219ENST00000514096 PSORS1C2Q9UIG4 136 aa4.89□□□□□ -1.63
LIMCH1-219ENST00000514096 CNBPP62633 177 aaKnown RBP4.89□□□□□ -1.63
LIMCH1-219ENST00000514096 PRLHP81277 87 aa4.89□□□□□ -1.63
LIMCH1-219ENST00000514096 SPACA4Q8TDM5 124 aa4.89□□□□□ -1.63
LIMCH1-219ENST00000514096 COX7BP24311 80 aa4.88□□□□□ -1.63
LIMCH1-219ENST00000514096 KRTAP11-1Q8IUC1 163 aa4.88□□□□□ -1.63
LIMCH1-219ENST00000514096 NDUFAF8A1L188 74 aa4.88□□□□□ -1.63
LIMCH1-219ENST00000514096 ROMO1P60602 79 aa4.88□□□□□ -1.63
LIMCH1-219ENST00000514096 LOC110117498A0A087WWA1 95 aa4.86□□□□□ -1.63
LIMCH1-219ENST00000514096 IGLV5-39A0A0G2JS06 123 aa4.85□□□□□ -1.63
LIMCH1-219ENST00000514096 A0A1W2PNM2 257 aa4.85□□□□□ -1.63
LIMCH1-219ENST00000514096 Q8IZM0 81 aa4.85□□□□□ -1.63
LIMCH1-219ENST00000514096 Q6ZSA8 131 aa4.84□□□□□ -1.63
LIMCH1-219ENST00000514096 LINC00167Q96N53 147 aa4.84□□□□□ -1.63
LIMCH1-219ENST00000514096 SSBP3-AS1Q7Z2R9 100 aa4.84□□□□□ -1.63
LIMCH1-219ENST00000514096 DNAH8Q96JB1 4490 aa4.84□□□□□ -1.64
LIMCH1-219ENST00000514096 K7EQZ3 153 aa4.84□□□□□ -1.64
LIMCH1-219ENST00000514096 LUZP6Q538Z0 58 aa4.84□□□□□ -1.64
LIMCH1-219ENST00000514096 ELOF1P60002 83 aaKnown RBP4.82□□□□□ -1.64
LIMCH1-219ENST00000514096 A8MWP4 228 aa4.81□□□□□ -1.64
LIMCH1-219ENST00000514096 PLAC8Q9NZF1 115 aa4.81□□□□□ -1.64
LIMCH1-219ENST00000514096 A0A1B0GU69 56 aa4.81□□□□□ -1.64
LIMCH1-219ENST00000514096 KRTAP7-1Q8IUC3 87 aa4.8□□□□□ -1.64
LIMCH1-219ENST00000514096 Q8NDZ9 215 aa4.8□□□□□ -1.64
LIMCH1-219ENST00000514096 K7ERS5 55 aa4.79□□□□□ -1.64
LIMCH1-219ENST00000514096 SEC61BP60468 96 aaKnown RBP4.79□□□□□ -1.64
LIMCH1-219ENST00000514096 IGLV9-49A0A0B4J1Y8 123 aa4.78□□□□□ -1.64
LIMCH1-219ENST00000514096 LINC01558Q9Y6Z2 57 aa4.78□□□□□ -1.64
LIMCH1-219ENST00000514096 IGLV7-43P04211 117 aa4.77□□□□□ -1.65
LIMCH1-219ENST00000514096 IGLV5-45A0A087WSX0 123 aa4.76□□□□□ -1.65
LIMCH1-219ENST00000514096 UBR4Q5T4S7 5183 aa4.76□□□□□ -1.65
LIMCH1-219ENST00000514096 Q9BRP9 147 aa4.76□□□□□ -1.65
LIMCH1-219ENST00000514096 A0A0G2JQZ4 141 aa4.75□□□□□ -1.65
LIMCH1-219ENST00000514096 ZCCHC13Q8WW36 166 aaKnown RBP4.74□□□□□ -1.65
LIMCH1-219ENST00000514096 LRP2P98164 4655 aa4.74□□□□□ -1.65
LIMCH1-219ENST00000514096 RNF213Q63HN8 5207 aa4.74□□□□□ -1.65
LIMCH1-219ENST00000514096 H3BQ85 93 aa4.73□□□□□ -1.65
LIMCH1-219ENST00000514096 UQCR11O14957 56 aa4.72□□□□□ -1.65
LIMCH1-219ENST00000514096 A0A087X002 238 aa4.72□□□□□ -1.65
LIMCH1-219ENST00000514096 TYMSOSQ8TAI1 123 aa4.72□□□□□ -1.65
LIMCH1-219ENST00000514096 ZNF861PO60384 105 aa4.71□□□□□ -1.65
LIMCH1-219ENST00000514096 KRTAP10-4P60372 401 aaPredicted RBP4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 SPANXA2-OT1Q8N9U9 137 aa4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 IGLV1-50A0A075B6I6 118 aa4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 TLX1NBP0CAT3 122 aa4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 SPINK6Q6UWN8 80 aa4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 C8orf17Q9NRJ1 99 aa4.7□□□□□ -1.66
LIMCH1-219ENST00000514096 A0A087WSZ3 146 aa4.69□□□□□ -1.66
LIMCH1-219ENST00000514096 SPINK1P00995 79 aa4.68□□□□□ -1.66
LIMCH1-219ENST00000514096 P0C880 135 aa4.68□□□□□ -1.66
LIMCH1-219ENST00000514096 DSCR10P59022 87 aa4.68□□□□□ -1.66
LIMCH1-219ENST00000514096 KCNQ1DNQ9H478 68 aa4.68□□□□□ -1.66
LIMCH1-219ENST00000514096 C20orf166-AS1Q96NR2 134 aa4.67□□□□□ -1.66
LIMCH1-219ENST00000514096 HRES1P13985 223 aa4.66□□□□□ -1.66
LIMCH1-219ENST00000514096 COX17Q14061 63 aa4.66□□□□□ -1.66
LIMCH1-219ENST00000514096 KRTAP25-1Q3LHN0 102 aa4.66□□□□□ -1.66
LIMCH1-219ENST00000514096 MT1HL1P0DM35 61 aa4.64□□□□□ -1.67
LIMCH1-219ENST00000514096 IGLV7-46A0A075B6I9 117 aa4.64□□□□□ -1.67
LIMCH1-219ENST00000514096 A8MUU9 505 aa4.64□□□□□ -1.67
LIMCH1-219ENST00000514096 KRTAP29-1A8MX34 341 aaPredicted RBP4.64□□□□□ -1.67
LIMCH1-219ENST00000514096 LINC00483Q53H64 154 aa4.63□□□□□ -1.67
LIMCH1-219ENST00000514096 DHRS4-AS1Q9P1J3 65 aa4.63□□□□□ -1.67
LIMCH1-219ENST00000514096 LPAP08519 4548 aa4.62□□□□□ -1.67
LIMCH1-219ENST00000514096 NOTCH2NLQ7Z3S9 236 aa4.61□□□□□ -1.67
LIMCH1-219ENST00000514096 Q8NBF4 154 aa4.61□□□□□ -1.67
LIMCH1-219ENST00000514096 H3BPC8 53 aa4.61□□□□□ -1.67
LIMCH1-219ENST00000514096 LINC00304Q8N9R0 145 aa4.61□□□□□ -1.67
LIMCH1-219ENST00000514096 MUC2Q02817 5179 aa4.61□□□□□ -1.67
LIMCH1-219ENST00000514096 KRTAP1-4P0C5Y4 121 aa4.6□□□□□ -1.67
LIMCH1-219ENST00000514096 KRTAP13-2Q52LG2 175 aa4.6□□□□□ -1.67
LIMCH1-219ENST00000514096 ASB16-AS1Q495Z4 193 aa4.59□□□□□ -1.67
LIMCH1-219ENST00000514096 ACYP2P14621 99 aa4.58□□□□□ -1.68
LIMCH1-219ENST00000514096 C9orf92A6NGG3 77 aa4.58□□□□□ -1.68
LIMCH1-219ENST00000514096 Q6ZRX8 168 aa4.58□□□□□ -1.68
LIMCH1-219ENST00000514096 Q8N377 158 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms