RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LPAP08519 4548 aa8.22□□□□□ -1.09
NUP54-213ENST00000513352 LRP2P98164 4655 aa8.21□□□□□ -1.1
NUP54-213ENST00000513352 XP32Q5T750 250 aa8.2□□□□□ -1.1
NUP54-213ENST00000513352 Q6ZVQ6 151 aa8.2□□□□□ -1.1
NUP54-213ENST00000513352 IGHV6-1A0A0B4J1U7 121 aa8.19□□□□□ -1.1
NUP54-213ENST00000513352 DSCR10P59022 87 aa8.19□□□□□ -1.1
NUP54-213ENST00000513352 UBL5Q9BZL1 73 aa8.19□□□□□ -1.1
NUP54-213ENST00000513352 LINC00846Q9NV44 126 aa8.19□□□□□ -1.1
NUP54-213ENST00000513352 NDUFB1O75438 58 aa8.18□□□□□ -1.1
NUP54-213ENST00000513352 A0A1B0GVX0 72 aa8.17□□□□□ -1.1
NUP54-213ENST00000513352 BPY2O14599 106 aa8.16□□□□□ -1.1
NUP54-213ENST00000513352 LINC00313P59037 77 aa8.15□□□□□ -1.1
NUP54-213ENST00000513352 A8MWP4 228 aa8.14□□□□□ -1.11
NUP54-213ENST00000513352 C8orf87E5RJ46 101 aa8.12□□□□□ -1.11
NUP54-213ENST00000513352 IGKV3D-7A0A0C4DH55 119 aa8.11□□□□□ -1.11
NUP54-213ENST00000513352 ACYP1P07311 99 aa8.11□□□□□ -1.11
NUP54-213ENST00000513352 NOTCH2NLQ7Z3S9 236 aa8.11□□□□□ -1.11
NUP54-213ENST00000513352 SEC61BP60468 96 aaKnown RBP8.1□□□□□ -1.11
NUP54-213ENST00000513352 FAM240AA0A1B0GVK7 77 aa8.09□□□□□ -1.11
NUP54-213ENST00000513352 K7EQZ3 153 aa8.08□□□□□ -1.12
NUP54-213ENST00000513352 PRR15Q8IV56 129 aa8.08□□□□□ -1.12
NUP54-213ENST00000513352 C8orf17Q9NRJ1 99 aa8.08□□□□□ -1.12
NUP54-213ENST00000513352 RPL37P61927 97 aaKnown RBP8.07□□□□□ -1.12
NUP54-213ENST00000513352 J3QR89 54 aa8.06□□□□□ -1.12
NUP54-213ENST00000513352 Q8N9L7 120 aa8.06□□□□□ -1.12
NUP54-213ENST00000513352 PCOTHQ58A44 107 aa8.05□□□□□ -1.12
NUP54-213ENST00000513352 Q75L30 129 aa8.05□□□□□ -1.12
NUP54-213ENST00000513352 KRTAP16-1A8MUX0 517 aa8.04□□□□□ -1.12
NUP54-213ENST00000513352 UBR4Q5T4S7 5183 aa8.04□□□□□ -1.12
NUP54-213ENST00000513352 C20orf166-AS1Q96NR2 134 aa8.03□□□□□ -1.12
NUP54-213ENST00000513352 ATP11AUNQ6ZP68 121 aa8.02□□□□□ -1.13
NUP54-213ENST00000513352 MMP24-AS1A0A0U1RRL7 71 aa8.01□□□□□ -1.13
NUP54-213ENST00000513352 A8MUU9 505 aa8.01□□□□□ -1.13
NUP54-213ENST00000513352 CXCL6P80162 114 aa8.01□□□□□ -1.13
NUP54-213ENST00000513352 hDV103S1A0JD37 113 aa7.99□□□□□ -1.13
NUP54-213ENST00000513352 WFDC13Q8IUB5 93 aa7.98□□□□□ -1.13
NUP54-213ENST00000513352 ATP5EP2Q5VTU8 51 aa7.97□□□□□ -1.13
NUP54-213ENST00000513352 CASC2Q6XLA1 102 aa7.96□□□□□ -1.14
NUP54-213ENST00000513352 TMEM254Q8TBM7 123 aa7.96□□□□□ -1.14
NUP54-213ENST00000513352 NDUFS5O43920 106 aa7.95□□□□□ -1.14
NUP54-213ENST00000513352 LINC00643Q86TS7 51 aa7.95□□□□□ -1.14
NUP54-213ENST00000513352 MRPL34Q9BQ48 92 aaKnown RBP7.95□□□□□ -1.14
NUP54-213ENST00000513352 HCG22E2RYF7 251 aa7.93□□□□□ -1.14
NUP54-213ENST00000513352 K7ERU9 68 aa7.93□□□□□ -1.14
NUP54-213ENST00000513352 HIST1H4AP62805 103 aaKnown RBP7.92□□□□□ -1.14
NUP54-213ENST00000513352 Q8N9P0 234 aaPredicted RBP7.92□□□□□ -1.14
NUP54-213ENST00000513352 RNF213Q63HN8 5207 aa7.91□□□□□ -1.14
NUP54-213ENST00000513352 KRTAP4-1Q9BYQ7 146 aa7.91□□□□□ -1.14
NUP54-213ENST00000513352 MUC17Q685J3 4493 aa7.9□□□□□ -1.15
NUP54-213ENST00000513352 ZCCHC13Q8WW36 166 aaKnown RBP7.88□□□□□ -1.15
NUP54-213ENST00000513352 A0A087WVE0 104 aa7.82□□□□□ -1.16
NUP54-213ENST00000513352 A0A0U1RQV1 116 aa7.82□□□□□ -1.16
NUP54-213ENST00000513352 MUC2Q02817 5179 aa7.76□□□□□ -1.17
NUP54-213ENST00000513352 MT-ATP8P03928 68 aa7.74□□□□□ -1.17
NUP54-213ENST00000513352 Q5W150 140 aa7.74□□□□□ -1.17
NUP54-213ENST00000513352 TP53AIP1Q9HCN2 124 aa7.74□□□□□ -1.17
NUP54-213ENST00000513352 SPINK7P58062 85 aa7.72□□□□□ -1.17
NUP54-213ENST00000513352 COX6B2Q6YFQ2 88 aa7.71□□□□□ -1.18
NUP54-213ENST00000513352 IGKV2D-30A0A075B6S6 120 aa7.7□□□□□ -1.18
NUP54-213ENST00000513352 IGKV2-30P06310 120 aa7.7□□□□□ -1.18
NUP54-213ENST00000513352 C7orf65Q6ZTY9 151 aa7.67□□□□□ -1.18
NUP54-213ENST00000513352 IMUPQ9GZP8 106 aa7.67□□□□□ -1.18
NUP54-213ENST00000513352 H3BS24 57 aa7.66□□□□□ -1.18
NUP54-213ENST00000513352 SCGB1A1P11684 91 aa7.66□□□□□ -1.18
NUP54-213ENST00000513352 FAM236DA0A1B0GTK5 79 aa7.65□□□□□ -1.18
NUP54-213ENST00000513352 UQCRQO14949 82 aa7.65□□□□□ -1.18
NUP54-213ENST00000513352 FAM236CP0DP71 79 aa7.65□□□□□ -1.18
NUP54-213ENST00000513352 HRES1P13985 223 aa7.65□□□□□ -1.18
NUP54-213ENST00000513352 RBM12B-AS1Q9P1G2 102 aa7.65□□□□□ -1.18
NUP54-213ENST00000513352 TRAV22A0A0B4J277 110 aa7.64□□□□□ -1.19
NUP54-213ENST00000513352 KRTAP19-2Q3LHN2 52 aa7.62□□□□□ -1.19
NUP54-213ENST00000513352 FAM236AA0A1B0GUQ0 79 aa7.6□□□□□ -1.19
NUP54-213ENST00000513352 FAM236BA0A1B0GV22 79 aa7.6□□□□□ -1.19
NUP54-213ENST00000513352 H0Y9P7 68 aa7.6□□□□□ -1.19
NUP54-213ENST00000513352 OCR1Q9BZK8 76 aa7.58□□□□□ -1.2
NUP54-213ENST00000513352 FAT4Q6V0I7 4981 aa7.58□□□□□ -1.2
NUP54-213ENST00000513352 MPLKIPQ8TAP9 179 aa7.57□□□□□ -1.2
NUP54-213ENST00000513352 ATOX1O00244 68 aa7.56□□□□□ -1.2
NUP54-213ENST00000513352 LOC101927531A0A1B0GV80 90 aa7.55□□□□□ -1.2
NUP54-213ENST00000513352 MP68P56378 58 aa7.53□□□□□ -1.2
NUP54-213ENST00000513352 MT1HP80294 61 aa7.51□□□□□ -1.21
NUP54-213ENST00000513352 C1orf64Q8NEQ6 169 aa7.51□□□□□ -1.21
NUP54-213ENST00000513352 LINC00208Q96KT6 92 aa7.51□□□□□ -1.21
NUP54-213ENST00000513352 CYP4F30PQ9H0H9 118 aa7.51□□□□□ -1.21
NUP54-213ENST00000513352 C4orf26Q17RF5 130 aa7.5□□□□□ -1.21
NUP54-213ENST00000513352 C5orf47Q569G3 176 aa7.5□□□□□ -1.21
NUP54-213ENST00000513352 SMIM20Q8N5G0 67 aa7.5□□□□□ -1.21
NUP54-213ENST00000513352 M0R2T5 61 aa7.49□□□□□ -1.21
NUP54-213ENST00000513352 KRTAP4-8Q9BYQ9 185 aa7.49□□□□□ -1.21
NUP54-213ENST00000513352 TRAV7A0A075B6U4 112 aa7.46□□□□□ -1.22
NUP54-213ENST00000513352 H3BPC8 53 aa7.44□□□□□ -1.22
NUP54-213ENST00000513352 H1FX-AS1Q4G0G2 97 aa7.41□□□□□ -1.22
NUP54-213ENST00000513352 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.39□□□□□ -1.23
NUP54-213ENST00000513352 KLKP1Q107X0 134 aa7.38□□□□□ -1.23
NUP54-213ENST00000513352 FLGP20930 4061 aaPredicted RBP7.37□□□□□ -1.23
NUP54-213ENST00000513352 KRTAP9-2Q9BYQ4 174 aa7.37□□□□□ -1.23
NUP54-213ENST00000513352 SERP2Q8N6R1 65 aa7.36□□□□□ -1.23
NUP54-213ENST00000513352 KRTAP9-6A0A140TA67 174 aa7.34□□□□□ -1.23
NUP54-213ENST00000513352 KRTAP3-1Q9BYR8 98 aa7.33□□□□□ -1.24
NUP54-213ENST00000513352 KRTAP10-6P60371 365 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms