RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 LINC01600Q96MT4 127 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 NXT2Q9NPJ8 142 aaKnown RBP-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 MANBALQ9NQG1 85 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 SPCS1Q9Y6A9 102 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 SPRR1AP35321 89 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 ATP5EP56381 51 aaPredicted RBP-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 UBE2D3P61077 147 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 UBE2D2P62837 147 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 HSD52Q0P140 79 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 DEFB133Q30KQ1 61 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 C10orf113Q5VZT2 155 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 TTTY10Q9BZA0 68 aa-0.05□□□□□ -2.42
CPSF3-205ENST00000489629 hADV29S1A0JD25 119 aa-0.06□□□□□ -2.42
CPSF3-205ENST00000489629 MT1GP13640 62 aa-0.06□□□□□ -2.42
CPSF3-205ENST00000489629 TMEM263Q8WUH6 116 aaKnown RBP-0.06□□□□□ -2.42
CPSF3-205ENST00000489629 C14orf144Q96I85 54 aa-0.06□□□□□ -2.42
CPSF3-205ENST00000489629 UQCR10Q9UDW1 63 aa-0.06□□□□□ -2.42
CPSF3-205ENST00000489629 FXYD6-FXYD2A0A087WZ82 144 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 TRBV6-1A0A0K0K1D8 114 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 C20orf202A1L168 122 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 FAM223BA6NKX1 122 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 DEFB4AO15263 64 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 PRM1P04553 51 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 MGPP08493 103 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 CD52P31358 61 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 MRPS10P82664 201 aaKnown RBP-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 MT1MQ8N339 61 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 PRO1854Q9UHT4 67 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 ANKRD36A6QL64 1941 aa-0.07□□□□□ -2.42
CPSF3-205ENST00000489629 LINC00959A0A1B0GUT2 108 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 DEFB108AA8MXU0 73 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 TMEM262E9PQX1 116 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 ATP6V1G2-DDX39BF2Z307 99 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 DEFB112Q30KQ8 113 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 GTF2H5Q6ZYL4 71 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 WFDC9Q8NEX5 89 aa-0.08□□□□□ -2.42
CPSF3-205ENST00000489629 NAP1L6A6NFF2 107 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 CRYM-AS1A6NIL9 109 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 H3BQ15 152 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 TRAPPC2P0DI81 140 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 TRAPPC2BP0DI82 140 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 SPRR1BP22528 89 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 S100PP25815 95 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 S100A3P33764 101 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 DEFB136Q30KP8 78 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 FAIMQ9NVQ4 179 aa-0.09□□□□□ -2.42
CPSF3-205ENST00000489629 MT-ATP8P03928 68 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 MT1EP04732 61 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 HTN3P15516 51 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 SEC11AP67812 179 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 DEFB135Q30KP9 77 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 PIGYQ3MUY2 71 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 C12orf57Q99622 126 aa-0.1□□□□□ -2.43
CPSF3-205ENST00000489629 A0A087WVE0 104 aa-0.11□□□□□ -2.43
CPSF3-205ENST00000489629 A0A1B0GWA3 101 aa-0.11□□□□□ -2.43
CPSF3-205ENST00000489629 COX6CP09669 75 aa-0.11□□□□□ -2.43
CPSF3-205ENST00000489629 WHAMMP3Q1A5X7 153 aa-0.11□□□□□ -2.43
CPSF3-205ENST00000489629 CGREF1Q99674 301 aa-0.11□□□□□ -2.43
CPSF3-205ENST00000489629 DEFB131BA0A096LNP1 70 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 A0A0G2JND7 137 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 C9orf92A6NGG3 77 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 K7EQZ3 153 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 GNGT2O14610 69 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 MPC2O95563 127 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 S100A10P60903 97 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 DEFA5Q01523 94 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 CRIPTQ9P021 101 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 UBE2D4Q9Y2X8 147 aa-0.12□□□□□ -2.43
CPSF3-205ENST00000489629 TRAV30A0A087WSZ9 112 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 UQCRHLA0A096LP55 91 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 TMEM218A2RU14 115 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 C7orf77A4D0Y5 90 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 SAA2P0DJI9 122 aaPredicted RBP-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 RBP2P50120 134 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 KRTDAPP60985 99 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 RPS29P62273 56 aaKnown RBP-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 MT1XP80297 61 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 RPS27LQ71UM5 84 aaKnown RBP-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 CACFD1Q9UGQ2 172 aa-0.13□□□□□ -2.43
CPSF3-205ENST00000489629 TRBV7-4A0A0J9YYF1 115 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 H7BZZ5 65 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 MT1AP04731 61 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 KLK9Q2XQG4 91 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 NCMAPQ5T1S8 102 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 DEFB108BQ8NET1 73 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 MT1LQ93083 61 aa-0.14□□□□□ -2.43
CPSF3-205ENST00000489629 H3BUX3 64 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 APELAP0DMC3 54 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 KRTAP19-5Q3LI72 72 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 DEFB107AQ8IZN7 70 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 TCEAL7Q9BRU2 100 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 PRO1933Q9H354 126 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 Q9Y3F1 56 aa-0.15□□□□□ -2.43
CPSF3-205ENST00000489629 TRBV25-1A0A075B6N4 114 aa-0.16□□□□□ -2.44
CPSF3-205ENST00000489629 TRGV9Q99603 122 aa-0.16□□□□□ -2.44
CPSF3-205ENST00000489629 PMCHL2Q9BQD1 86 aa-0.16□□□□□ -2.44
CPSF3-205ENST00000489629 SPTY2D1-AS1A0A0U1RR47 76 aa-0.17□□□□□ -2.44
CPSF3-205ENST00000489629 A0A1B0GU69 56 aa-0.18□□□□□ -2.44
CPSF3-205ENST00000489629 DEFB105AQ8NG35 78 aa-0.18□□□□□ -2.44
CPSF3-205ENST00000489629 FXYD6Q9H0Q3 95 aa-0.18□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms