RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 Q6ZQT0 140 aa6.83□□□□□ -1.32
HDAC6-227ENST00000485102 VPS25Q9BRG1 176 aa6.83□□□□□ -1.32
HDAC6-227ENST00000485102 A0A1B0GV72 72 aa6.82□□□□□ -1.32
HDAC6-227ENST00000485102 A0A1W2PNM2 257 aa6.82□□□□□ -1.32
HDAC6-227ENST00000485102 C14orf132Q9NPU4 83 aa6.81□□□□□ -1.32
HDAC6-227ENST00000485102 PRO0461Q9UI25 63 aa6.81□□□□□ -1.32
HDAC6-227ENST00000485102 J3KT08 172 aa6.8□□□□□ -1.32
HDAC6-227ENST00000485102 A0A0G2JQZ4 141 aa6.79□□□□□ -1.32
HDAC6-227ENST00000485102 MTURNQ8N3F0 131 aa6.79□□□□□ -1.32
HDAC6-227ENST00000485102 KRTAP9-7A8MTY7 169 aa6.78□□□□□ -1.32
HDAC6-227ENST00000485102 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.78□□□□□ -1.32
HDAC6-227ENST00000485102 SMCPP49901 116 aaPredicted RBP6.76□□□□□ -1.33
HDAC6-227ENST00000485102 Q75L30 129 aa6.76□□□□□ -1.33
HDAC6-227ENST00000485102 NREPQ16612 68 aa6.75□□□□□ -1.33
HDAC6-227ENST00000485102 SSPOA2VEC9 5147 aa6.74□□□□□ -1.33
HDAC6-227ENST00000485102 ATP11AUNQ6ZP68 121 aa6.74□□□□□ -1.33
HDAC6-227ENST00000485102 KRTAP9-8Q9BYQ0 159 aa6.74□□□□□ -1.33
HDAC6-227ENST00000485102 NDUFB1O75438 58 aa6.73□□□□□ -1.33
HDAC6-227ENST00000485102 ETDBQ3ZM63 59 aa6.73□□□□□ -1.33
HDAC6-227ENST00000485102 USH2AO75445 5202 aa6.72□□□□□ -1.33
HDAC6-227ENST00000485102 ACYP1P07311 99 aa6.72□□□□□ -1.33
HDAC6-227ENST00000485102 UBL5Q9BZL1 73 aa6.72□□□□□ -1.33
HDAC6-227ENST00000485102 A0A1B0GV90 55 aa6.71□□□□□ -1.34
HDAC6-227ENST00000485102 IGKV4-1P06312 121 aa6.71□□□□□ -1.34
HDAC6-227ENST00000485102 SIGMAR1Q99720 223 aa6.71□□□□□ -1.34
HDAC6-227ENST00000485102 LINC00472Q9H8W2 130 aa6.71□□□□□ -1.34
HDAC6-227ENST00000485102 J3QR89 54 aa6.7□□□□□ -1.34
HDAC6-227ENST00000485102 C8orf87E5RJ46 101 aa6.68□□□□□ -1.34
HDAC6-227ENST00000485102 FAM240AA0A1B0GVK7 77 aa6.67□□□□□ -1.34
HDAC6-227ENST00000485102 Q96NJ1 140 aa6.67□□□□□ -1.34
HDAC6-227ENST00000485102 BPY2O14599 106 aa6.65□□□□□ -1.34
HDAC6-227ENST00000485102 A8MWP4 228 aa6.64□□□□□ -1.35
HDAC6-227ENST00000485102 LINC00313P59037 77 aa6.64□□□□□ -1.35
HDAC6-227ENST00000485102 C20orf166-AS1Q96NR2 134 aa6.64□□□□□ -1.35
HDAC6-227ENST00000485102 FCGBPQ9Y6R7 5405 aaPredicted RBP6.64□□□□□ -1.35
HDAC6-227ENST00000485102 A0A1B0GVX0 72 aa6.63□□□□□ -1.35
HDAC6-227ENST00000485102 A8MUU9 505 aa6.62□□□□□ -1.35
HDAC6-227ENST00000485102 Q6ZVQ6 151 aa6.62□□□□□ -1.35
HDAC6-227ENST00000485102 LINC00846Q9NV44 126 aa6.6□□□□□ -1.35
HDAC6-227ENST00000485102 IGHV6-1A0A0B4J1U7 121 aa6.59□□□□□ -1.35
HDAC6-227ENST00000485102 CXCL6P80162 114 aa6.59□□□□□ -1.35
HDAC6-227ENST00000485102 DEFB116Q30KQ4 102 aa6.59□□□□□ -1.35
HDAC6-227ENST00000485102 ATP5EP2Q5VTU8 51 aa6.59□□□□□ -1.35
HDAC6-227ENST00000485102 PRR15Q8IV56 129 aa6.58□□□□□ -1.36
HDAC6-227ENST00000485102 MT2AP02795 61 aa6.57□□□□□ -1.36
HDAC6-227ENST00000485102 LCE2BO14633 110 aa6.55□□□□□ -1.36
HDAC6-227ENST00000485102 IGKV3D-7A0A0C4DH55 119 aa6.54□□□□□ -1.36
HDAC6-227ENST00000485102 KRTAP19-1Q8IUB9 90 aa6.54□□□□□ -1.36
HDAC6-227ENST00000485102 K7ERU9 68 aa6.53□□□□□ -1.36
HDAC6-227ENST00000485102 DSCR10P59022 87 aa6.53□□□□□ -1.36
HDAC6-227ENST00000485102 KRTAP9-3Q9BYQ3 159 aa6.53□□□□□ -1.36
HDAC6-227ENST00000485102 C8orf17Q9NRJ1 99 aa6.53□□□□□ -1.36
HDAC6-227ENST00000485102 LINC00643Q86TS7 51 aa6.52□□□□□ -1.37
HDAC6-227ENST00000485102 MT1FP04733 61 aa6.51□□□□□ -1.37
HDAC6-227ENST00000485102 MPLKIPQ8TAP9 179 aa6.51□□□□□ -1.37
HDAC6-227ENST00000485102 TMEM254Q8TBM7 123 aa6.5□□□□□ -1.37
HDAC6-227ENST00000485102 hDV103S1A0JD37 113 aa6.49□□□□□ -1.37
HDAC6-227ENST00000485102 KRTAP16-1A8MUX0 517 aa6.49□□□□□ -1.37
HDAC6-227ENST00000485102 K7EQZ3 153 aa6.49□□□□□ -1.37
HDAC6-227ENST00000485102 MRPL34Q9BQ48 92 aaKnown RBP6.48□□□□□ -1.37
HDAC6-227ENST00000485102 Q8N9P0 234 aaPredicted RBP6.47□□□□□ -1.37
HDAC6-227ENST00000485102 HCG22E2RYF7 251 aa6.46□□□□□ -1.38
HDAC6-227ENST00000485102 KRTAP10-10P60014 251 aa6.46□□□□□ -1.38
HDAC6-227ENST00000485102 CASC2Q6XLA1 102 aa6.46□□□□□ -1.38
HDAC6-227ENST00000485102 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
HDAC6-227ENST00000485102 MMP24-AS1A0A0U1RRL7 71 aa6.45□□□□□ -1.38
HDAC6-227ENST00000485102 FAM236DA0A1B0GTK5 79 aa6.45□□□□□ -1.38
HDAC6-227ENST00000485102 FAM236CP0DP71 79 aa6.45□□□□□ -1.38
HDAC6-227ENST00000485102 HRES1P13985 223 aa6.45□□□□□ -1.38
HDAC6-227ENST00000485102 RBM12B-AS1Q9P1G2 102 aa6.45□□□□□ -1.38
HDAC6-227ENST00000485102 NOTCH2NLQ7Z3S9 236 aa6.43□□□□□ -1.38
HDAC6-227ENST00000485102 SYNE2Q8WXH0 6885 aaKnown RBP6.42□□□□□ -1.38
HDAC6-227ENST00000485102 TP53AIP1Q9HCN2 124 aa6.42□□□□□ -1.38
HDAC6-227ENST00000485102 NDUFS5O43920 106 aa6.41□□□□□ -1.38
HDAC6-227ENST00000485102 HIST1H4AP62805 103 aaKnown RBP6.4□□□□□ -1.38
HDAC6-227ENST00000485102 KRTAP19-6Q3LI70 58 aa6.4□□□□□ -1.38
HDAC6-227ENST00000485102 Q8N9L7 120 aa6.4□□□□□ -1.38
HDAC6-227ENST00000485102 WFDC13Q8IUB5 93 aa6.39□□□□□ -1.39
HDAC6-227ENST00000485102 ZCCHC13Q8WW36 166 aaKnown RBP6.39□□□□□ -1.39
HDAC6-227ENST00000485102 IMUPQ9GZP8 106 aa6.38□□□□□ -1.39
HDAC6-227ENST00000485102 UQCRQO14949 82 aa6.28□□□□□ -1.4
HDAC6-227ENST00000485102 KRTAP6-3Q3LI67 103 aa6.28□□□□□ -1.4
HDAC6-227ENST00000485102 ATOX1O00244 68 aa6.27□□□□□ -1.41
HDAC6-227ENST00000485102 SCGB1A1P11684 91 aa6.27□□□□□ -1.41
HDAC6-227ENST00000485102 C7orf65Q6ZTY9 151 aa6.26□□□□□ -1.41
HDAC6-227ENST00000485102 SPINK7P58062 85 aa6.25□□□□□ -1.41
HDAC6-227ENST00000485102 SMIM20Q8N5G0 67 aa6.25□□□□□ -1.41
HDAC6-227ENST00000485102 TRAV22A0A0B4J277 110 aa6.24□□□□□ -1.41
HDAC6-227ENST00000485102 A0A087WVE0 104 aa6.23□□□□□ -1.41
HDAC6-227ENST00000485102 MP68P56378 58 aa6.21□□□□□ -1.42
HDAC6-227ENST00000485102 LOC101927531A0A1B0GV80 90 aa6.2□□□□□ -1.42
HDAC6-227ENST00000485102 MT-ATP8P03928 68 aa6.2□□□□□ -1.42
HDAC6-227ENST00000485102 C5orf47Q569G3 176 aa6.2□□□□□ -1.42
HDAC6-227ENST00000485102 Q5W150 140 aa6.2□□□□□ -1.42
HDAC6-227ENST00000485102 H3BPC8 53 aa6.19□□□□□ -1.42
HDAC6-227ENST00000485102 IGKV2D-30A0A075B6S6 120 aa6.18□□□□□ -1.42
HDAC6-227ENST00000485102 IGKV2-30P06310 120 aa6.18□□□□□ -1.42
HDAC6-227ENST00000485102 H0Y9P7 68 aa6.15□□□□□ -1.42
HDAC6-227ENST00000485102 OCR1Q9BZK8 76 aa6.15□□□□□ -1.42
HDAC6-227ENST00000485102 FAM236AA0A1B0GUQ0 79 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms