RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 MT1HP80294 61 aa10.11□□□□□ -0.79
COL7A1-207ENST00000467985 A0A1B0GW54 56 aa10.1□□□□□ -0.79
COL7A1-207ENST00000467985 LCE2DQ5TA82 110 aaPredicted RBP10.08□□□□□ -0.8
COL7A1-207ENST00000467985 ATP11AUNQ6ZP68 121 aa10.08□□□□□ -0.8
COL7A1-207ENST00000467985 Q75L30 129 aa10.08□□□□□ -0.8
COL7A1-207ENST00000467985 KRTAP9-6A0A140TA67 174 aa10.05□□□□□ -0.8
COL7A1-207ENST00000467985 COX6B2Q6YFQ2 88 aa10.05□□□□□ -0.8
COL7A1-207ENST00000467985 Q96NJ1 140 aa10.03□□□□□ -0.8
COL7A1-207ENST00000467985 NREPQ16612 68 aa10.02□□□□□ -0.81
COL7A1-207ENST00000467985 SIGMAR1Q99720 223 aa10.02□□□□□ -0.81
COL7A1-207ENST00000467985 IGKV4-1P06312 121 aa9.99□□□□□ -0.81
COL7A1-207ENST00000467985 M0R2T5 61 aa9.98□□□□□ -0.81
COL7A1-207ENST00000467985 DEFB116Q30KQ4 102 aa9.98□□□□□ -0.81
COL7A1-207ENST00000467985 C20orf166-AS1Q96NR2 134 aa9.97□□□□□ -0.81
COL7A1-207ENST00000467985 FLGP20930 4061 aaPredicted RBP9.97□□□□□ -0.81
COL7A1-207ENST00000467985 UBL5Q9BZL1 73 aa9.96□□□□□ -0.82
COL7A1-207ENST00000467985 LINC00472Q9H8W2 130 aa9.96□□□□□ -0.82
COL7A1-207ENST00000467985 A8MUU9 505 aa9.94□□□□□ -0.82
COL7A1-207ENST00000467985 J3KT08 172 aa9.94□□□□□ -0.82
COL7A1-207ENST00000467985 LORP23490 312 aaPredicted RBP9.93□□□□□ -0.82
COL7A1-207ENST00000467985 KRTAP10-6P60371 365 aaPredicted RBP9.93□□□□□ -0.82
COL7A1-207ENST00000467985 LINC00846Q9NV44 126 aa9.93□□□□□ -0.82
COL7A1-207ENST00000467985 J3QR89 54 aa9.92□□□□□ -0.82
COL7A1-207ENST00000467985 ACYP1P07311 99 aa9.92□□□□□ -0.82
COL7A1-207ENST00000467985 Q6ZVQ6 151 aa9.92□□□□□ -0.82
COL7A1-207ENST00000467985 FSIP2Q5CZC0 6907 aa9.89□□□□□ -0.83
COL7A1-207ENST00000467985 FAM240AA0A1B0GVK7 77 aa9.89□□□□□ -0.83
COL7A1-207ENST00000467985 BPY2O14599 106 aa9.89□□□□□ -0.83
COL7A1-207ENST00000467985 NDUFB1O75438 58 aa9.89□□□□□ -0.83
COL7A1-207ENST00000467985 DSCR10P59022 87 aa9.88□□□□□ -0.83
COL7A1-207ENST00000467985 LINC00313P59037 77 aa9.87□□□□□ -0.83
COL7A1-207ENST00000467985 IGHV6-1A0A0B4J1U7 121 aa9.85□□□□□ -0.83
COL7A1-207ENST00000467985 A8MWP4 228 aa9.83□□□□□ -0.84
COL7A1-207ENST00000467985 A0A1B0GVX0 72 aa9.82□□□□□ -0.84
COL7A1-207ENST00000467985 CRCT1Q9UGL9 99 aa9.82□□□□□ -0.84
COL7A1-207ENST00000467985 KRTAP16-1A8MUX0 517 aa9.78□□□□□ -0.84
COL7A1-207ENST00000467985 C8orf87E5RJ46 101 aa9.78□□□□□ -0.84
COL7A1-207ENST00000467985 IGKV3D-7A0A0C4DH55 119 aa9.77□□□□□ -0.85
COL7A1-207ENST00000467985 K7ERU9 68 aa9.77□□□□□ -0.85
COL7A1-207ENST00000467985 K7EQZ3 153 aa9.76□□□□□ -0.85
COL7A1-207ENST00000467985 PRR15Q8IV56 129 aa9.76□□□□□ -0.85
COL7A1-207ENST00000467985 CXCL6P80162 114 aa9.74□□□□□ -0.85
COL7A1-207ENST00000467985 ATP5EP2Q5VTU8 51 aa9.73□□□□□ -0.85
COL7A1-207ENST00000467985 NOTCH2NLQ7Z3S9 236 aa9.73□□□□□ -0.85
COL7A1-207ENST00000467985 Q8N9L7 120 aa9.73□□□□□ -0.85
COL7A1-207ENST00000467985 C8orf17Q9NRJ1 99 aa9.72□□□□□ -0.85
COL7A1-207ENST00000467985 LINC00643Q86TS7 51 aa9.7□□□□□ -0.86
COL7A1-207ENST00000467985 MMP24-AS1A0A0U1RRL7 71 aa9.65□□□□□ -0.86
COL7A1-207ENST00000467985 RBM12B-AS1Q9P1G2 102 aa9.64□□□□□ -0.87
COL7A1-207ENST00000467985 FAM236DA0A1B0GTK5 79 aa9.63□□□□□ -0.87
COL7A1-207ENST00000467985 hDV103S1A0JD37 113 aa9.63□□□□□ -0.87
COL7A1-207ENST00000467985 FAM236CP0DP71 79 aa9.63□□□□□ -0.87
COL7A1-207ENST00000467985 HIST1H4AP62805 103 aaKnown RBP9.63□□□□□ -0.87
COL7A1-207ENST00000467985 WFDC13Q8IUB5 93 aa9.63□□□□□ -0.87
COL7A1-207ENST00000467985 CASC2Q6XLA1 102 aa9.62□□□□□ -0.87
COL7A1-207ENST00000467985 TMEM254Q8TBM7 123 aa9.61□□□□□ -0.87
COL7A1-207ENST00000467985 HCG22E2RYF7 251 aa9.6□□□□□ -0.87
COL7A1-207ENST00000467985 MPLKIPQ8TAP9 179 aa9.6□□□□□ -0.87
COL7A1-207ENST00000467985 HRES1P13985 223 aa9.59□□□□□ -0.87
COL7A1-207ENST00000467985 MRPL34Q9BQ48 92 aaKnown RBP9.59□□□□□ -0.87
COL7A1-207ENST00000467985 NDUFS5O43920 106 aa9.58□□□□□ -0.88
COL7A1-207ENST00000467985 ZCCHC13Q8WW36 166 aaKnown RBP9.56□□□□□ -0.88
COL7A1-207ENST00000467985 KRTAP9-8Q9BYQ0 159 aa9.56□□□□□ -0.88
COL7A1-207ENST00000467985 Q8N9P0 234 aaPredicted RBP9.53□□□□□ -0.88
COL7A1-207ENST00000467985 A0A087WVE0 104 aa9.49□□□□□ -0.89
COL7A1-207ENST00000467985 SPINK7P58062 85 aa9.48□□□□□ -0.89
COL7A1-207ENST00000467985 MT-ATP8P03928 68 aa9.46□□□□□ -0.9
COL7A1-207ENST00000467985 MT2AP02795 61 aa9.42□□□□□ -0.9
COL7A1-207ENST00000467985 IMUPQ9GZP8 106 aa9.42□□□□□ -0.9
COL7A1-207ENST00000467985 TP53AIP1Q9HCN2 124 aa9.39□□□□□ -0.91
COL7A1-207ENST00000467985 USH2AO75445 5202 aa9.36□□□□□ -0.91
COL7A1-207ENST00000467985 SCGB1A1P11684 91 aa9.36□□□□□ -0.91
COL7A1-207ENST00000467985 MT1FP04733 61 aa9.33□□□□□ -0.92
COL7A1-207ENST00000467985 KRTAP10-10P60014 251 aa9.33□□□□□ -0.92
COL7A1-207ENST00000467985 SSPOA2VEC9 5147 aa9.31□□□□□ -0.92
COL7A1-207ENST00000467985 Q5W150 140 aa9.3□□□□□ -0.92
COL7A1-207ENST00000467985 FAM236AA0A1B0GUQ0 79 aa9.29□□□□□ -0.92
COL7A1-207ENST00000467985 FAM236BA0A1B0GV22 79 aa9.29□□□□□ -0.92
COL7A1-207ENST00000467985 UQCRQO14949 82 aa9.28□□□□□ -0.92
COL7A1-207ENST00000467985 IGKV2D-30A0A075B6S6 120 aa9.26□□□□□ -0.93
COL7A1-207ENST00000467985 TRAV22A0A0B4J277 110 aa9.26□□□□□ -0.93
COL7A1-207ENST00000467985 IGKV2-30P06310 120 aa9.26□□□□□ -0.93
COL7A1-207ENST00000467985 KRTAP9-3Q9BYQ3 159 aa9.26□□□□□ -0.93
COL7A1-207ENST00000467985 C7orf65Q6ZTY9 151 aa9.23□□□□□ -0.93
COL7A1-207ENST00000467985 LCE2BO14633 110 aa9.22□□□□□ -0.93
COL7A1-207ENST00000467985 H0Y9P7 68 aa9.21□□□□□ -0.94
COL7A1-207ENST00000467985 OCR1Q9BZK8 76 aa9.21□□□□□ -0.94
COL7A1-207ENST00000467985 ATOX1O00244 68 aa9.19□□□□□ -0.94
COL7A1-207ENST00000467985 SMIM20Q8N5G0 67 aa9.19□□□□□ -0.94
COL7A1-207ENST00000467985 MP68P56378 58 aa9.17□□□□□ -0.94
COL7A1-207ENST00000467985 H1FX-AS1Q4G0G2 97 aa9.17□□□□□ -0.94
COL7A1-207ENST00000467985 LOC101927531A0A1B0GV80 90 aa9.14□□□□□ -0.95
COL7A1-207ENST00000467985 C5orf47Q569G3 176 aa9.14□□□□□ -0.95
COL7A1-207ENST00000467985 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.13□□□□□ -0.95
COL7A1-207ENST00000467985 TRAV7A0A075B6U4 112 aa9.12□□□□□ -0.95
COL7A1-207ENST00000467985 FCGBPQ9Y6R7 5405 aaPredicted RBP9.11□□□□□ -0.95
COL7A1-207ENST00000467985 LINC00208Q96KT6 92 aa9.11□□□□□ -0.95
COL7A1-207ENST00000467985 KRTAP19-1Q8IUB9 90 aa9.1□□□□□ -0.95
COL7A1-207ENST00000467985 C1orf64Q8NEQ6 169 aa9.1□□□□□ -0.95
COL7A1-207ENST00000467985 H3BPC8 53 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms