RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 LINC00846Q9NV44 126 aa12.26□□□□□ -0.45
C9orf3-209ENST00000460573 LINC00643Q86TS7 51 aa12.24□□□□□ -0.45
C9orf3-209ENST00000460573 J3KT08 172 aa12.23□□□□□ -0.45
C9orf3-209ENST00000460573 SEC61BP60468 96 aaKnown RBP12.22□□□□□ -0.45
C9orf3-209ENST00000460573 DEFB116Q30KQ4 102 aa12.21□□□□□ -0.45
C9orf3-209ENST00000460573 NREPQ16612 68 aa12.19□□□□□ -0.46
C9orf3-209ENST00000460573 ATP5EP2Q5VTU8 51 aa12.15□□□□□ -0.46
C9orf3-209ENST00000460573 Q6ZVQ6 151 aa12.14□□□□□ -0.47
C9orf3-209ENST00000460573 LINC00313P59037 77 aa12.12□□□□□ -0.47
C9orf3-209ENST00000460573 RPL37P61927 97 aaKnown RBP12.12□□□□□ -0.47
C9orf3-209ENST00000460573 NDUFB1O75438 58 aa12.11□□□□□ -0.47
C9orf3-209ENST00000460573 MUC17Q685J3 4493 aa12.11□□□□□ -0.47
C9orf3-209ENST00000460573 IGHV6-1A0A0B4J1U7 121 aa12.09□□□□□ -0.47
C9orf3-209ENST00000460573 A0A1B0GVX0 72 aa12.09□□□□□ -0.47
C9orf3-209ENST00000460573 DSCR10P59022 87 aa12.09□□□□□ -0.47
C9orf3-209ENST00000460573 IMUPQ9GZP8 106 aa12.09□□□□□ -0.47
C9orf3-209ENST00000460573 C8orf87E5RJ46 101 aa12.08□□□□□ -0.48
C9orf3-209ENST00000460573 MT-ATP8P03928 68 aa12.07□□□□□ -0.48
C9orf3-209ENST00000460573 CXCL6P80162 114 aa12.07□□□□□ -0.48
C9orf3-209ENST00000460573 Q75L30 129 aa12.07□□□□□ -0.48
C9orf3-209ENST00000460573 A8MWP4 228 aa12.06□□□□□ -0.48
C9orf3-209ENST00000460573 C20orf166-AS1Q96NR2 134 aa12.04□□□□□ -0.48
C9orf3-209ENST00000460573 PCOTHQ58A44 107 aa12.03□□□□□ -0.48
C9orf3-209ENST00000460573 FAT4Q6V0I7 4981 aa12.02□□□□□ -0.48
C9orf3-209ENST00000460573 A8MUU9 505 aa12.01□□□□□ -0.49
C9orf3-209ENST00000460573 BPY2O14599 106 aa12.01□□□□□ -0.49
C9orf3-209ENST00000460573 NOTCH2NLQ7Z3S9 236 aa12.01□□□□□ -0.49
C9orf3-209ENST00000460573 LCE2AQ5TA79 106 aaPredicted RBP12□□□□□ -0.49
C9orf3-209ENST00000460573 IGKV3D-7A0A0C4DH55 119 aa11.99□□□□□ -0.49
C9orf3-209ENST00000460573 KRTAP16-1A8MUX0 517 aa11.99□□□□□ -0.49
C9orf3-209ENST00000460573 ATP11AUNQ6ZP68 121 aa11.99□□□□□ -0.49
C9orf3-209ENST00000460573 PRR15Q8IV56 129 aa11.98□□□□□ -0.49
C9orf3-209ENST00000460573 C8orf17Q9NRJ1 99 aa11.94□□□□□ -0.5
C9orf3-209ENST00000460573 SCGB1A1P11684 91 aa11.92□□□□□ -0.5
C9orf3-209ENST00000460573 KRTAP9-2Q9BYQ4 174 aa11.91□□□□□ -0.5
C9orf3-209ENST00000460573 KRTAP4-1Q9BYQ7 146 aa11.91□□□□□ -0.5
C9orf3-209ENST00000460573 K7EQZ3 153 aa11.89□□□□□ -0.51
C9orf3-209ENST00000460573 HIST1H4AP62805 103 aaKnown RBP11.88□□□□□ -0.51
C9orf3-209ENST00000460573 MMP24-AS1A0A0U1RRL7 71 aa11.84□□□□□ -0.51
C9orf3-209ENST00000460573 Q8N9P0 234 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-209ENST00000460573 TMEM254Q8TBM7 123 aa11.82□□□□□ -0.52
C9orf3-209ENST00000460573 hDV103S1A0JD37 113 aa11.8□□□□□ -0.52
C9orf3-209ENST00000460573 Q8N9L7 120 aa11.78□□□□□ -0.52
C9orf3-209ENST00000460573 MRPL34Q9BQ48 92 aaKnown RBP11.78□□□□□ -0.52
C9orf3-209ENST00000460573 A0A087WVE0 104 aa11.75□□□□□ -0.53
C9orf3-209ENST00000460573 FAM236AA0A1B0GUQ0 79 aa11.73□□□□□ -0.53
C9orf3-209ENST00000460573 FAM236BA0A1B0GV22 79 aa11.73□□□□□ -0.53
C9orf3-209ENST00000460573 ZCCHC13Q8WW36 166 aaKnown RBP11.72□□□□□ -0.53
C9orf3-209ENST00000460573 CASC2Q6XLA1 102 aa11.71□□□□□ -0.53
C9orf3-209ENST00000460573 WFDC13Q8IUB5 93 aa11.69□□□□□ -0.54
C9orf3-209ENST00000460573 ATOX1O00244 68 aa11.68□□□□□ -0.54
C9orf3-209ENST00000460573 HCG22E2RYF7 251 aa11.67□□□□□ -0.54
C9orf3-209ENST00000460573 NDUFS5O43920 106 aa11.65□□□□□ -0.54
C9orf3-209ENST00000460573 SMIM20Q8N5G0 67 aa11.65□□□□□ -0.54
C9orf3-209ENST00000460573 KRTAP19-2Q3LHN2 52 aa11.58□□□□□ -0.56
C9orf3-209ENST00000460573 KRTAP9-6A0A140TA67 174 aa11.57□□□□□ -0.56
C9orf3-209ENST00000460573 COX6B2Q6YFQ2 88 aa11.57□□□□□ -0.56
C9orf3-209ENST00000460573 ANAPC13Q9BS18 74 aa11.57□□□□□ -0.56
C9orf3-209ENST00000460573 LCE2CQ5TA81 110 aa11.53□□□□□ -0.56
C9orf3-209ENST00000460573 TRAV7A0A075B6U4 112 aa11.52□□□□□ -0.57
C9orf3-209ENST00000460573 SPINK7P58062 85 aa11.51□□□□□ -0.57
C9orf3-209ENST00000460573 SERP2Q8N6R1 65 aa11.51□□□□□ -0.57
C9orf3-209ENST00000460573 M0R2T5 61 aa11.5□□□□□ -0.57
C9orf3-209ENST00000460573 PCP4P48539 62 aa11.49□□□□□ -0.57
C9orf3-209ENST00000460573 MT1HP80294 61 aa11.49□□□□□ -0.57
C9orf3-209ENST00000460573 TP53AIP1Q9HCN2 124 aa11.48□□□□□ -0.57
C9orf3-209ENST00000460573 OCR1Q9BZK8 76 aa11.47□□□□□ -0.57
C9orf3-209ENST00000460573 HRES1P13985 223 aa11.46□□□□□ -0.57
C9orf3-209ENST00000460573 Q5W150 140 aa11.46□□□□□ -0.57
C9orf3-209ENST00000460573 LCE2DQ5TA82 110 aaPredicted RBP11.45□□□□□ -0.58
C9orf3-209ENST00000460573 COX7CP15954 63 aa11.44□□□□□ -0.58
C9orf3-209ENST00000460573 RBM12B-AS1Q9P1G2 102 aa11.44□□□□□ -0.58
C9orf3-209ENST00000460573 UQCRQO14949 82 aa11.42□□□□□ -0.58
C9orf3-209ENST00000460573 MPLKIPQ8TAP9 179 aa11.42□□□□□ -0.58
C9orf3-209ENST00000460573 C5orf47Q569G3 176 aa11.38□□□□□ -0.59
C9orf3-209ENST00000460573 C7orf65Q6ZTY9 151 aa11.36□□□□□ -0.59
C9orf3-209ENST00000460573 FAM236DA0A1B0GTK5 79 aa11.35□□□□□ -0.59
C9orf3-209ENST00000460573 FAM236CP0DP71 79 aa11.35□□□□□ -0.59
C9orf3-209ENST00000460573 IGKV2D-30A0A075B6S6 120 aa11.34□□□□□ -0.59
C9orf3-209ENST00000460573 IGKV2-30P06310 120 aa11.34□□□□□ -0.59
C9orf3-209ENST00000460573 KRTAP10-6P60371 365 aaPredicted RBP11.3□□□□□ -0.6
C9orf3-209ENST00000460573 H3BPC8 53 aa11.29□□□□□ -0.6
C9orf3-209ENST00000460573 MP68P56378 58 aa11.29□□□□□ -0.6
C9orf3-209ENST00000460573 TRAV22A0A0B4J277 110 aa11.26□□□□□ -0.61
C9orf3-209ENST00000460573 CCDC179H3BU77 68 aa11.25□□□□□ -0.61
C9orf3-209ENST00000460573 LORP23490 312 aaPredicted RBP11.25□□□□□ -0.61
C9orf3-209ENST00000460573 CRCT1Q9UGL9 99 aa11.25□□□□□ -0.61
C9orf3-209ENST00000460573 C20orf197Q8N268 126 aa11.23□□□□□ -0.61
C9orf3-209ENST00000460573 H0Y9P7 68 aa11.22□□□□□ -0.61
C9orf3-209ENST00000460573 KLKP1Q107X0 134 aa11.22□□□□□ -0.61
C9orf3-209ENST00000460573 FSIP2Q5CZC0 6907 aa11.19□□□□□ -0.62
C9orf3-209ENST00000460573 FLGP20930 4061 aaPredicted RBP11.18□□□□□ -0.62
C9orf3-209ENST00000460573 NDUFC1O43677 76 aa11.16□□□□□ -0.62
C9orf3-209ENST00000460573 LOC101927531A0A1B0GV80 90 aa11.15□□□□□ -0.62
C9orf3-209ENST00000460573 LINC00208Q96KT6 92 aa11.14□□□□□ -0.63
C9orf3-209ENST00000460573 C1orf64Q8NEQ6 169 aa11.13□□□□□ -0.63
C9orf3-209ENST00000460573 CYP4F30PQ9H0H9 118 aa11.11□□□□□ -0.63
C9orf3-209ENST00000460573 SNURFQ9Y675 71 aa11.11□□□□□ -0.63
C9orf3-209ENST00000460573 C4orf26Q17RF5 130 aa11.09□□□□□ -0.63
C9orf3-209ENST00000460573 H1FX-AS1Q4G0G2 97 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms