RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 TENM2Q9NT68 2774 aa2.96□□□□□ -1.94
VPS13A-207ENST00000419472 DEFB4AO15263 64 aa2.95□□□□□ -1.94
VPS13A-207ENST00000419472 LINC00208Q96KT6 92 aa2.95□□□□□ -1.94
VPS13A-207ENST00000419472 NOP10Q9NPE3 64 aaKnown RBP2.95□□□□□ -1.94
VPS13A-207ENST00000419472 TRGV2A0A075B6R0 118 aa2.95□□□□□ -1.94
VPS13A-207ENST00000419472 KRTAP1-5Q9BYS1 174 aa2.95□□□□□ -1.94
VPS13A-207ENST00000419472 PLAC8Q9NZF1 115 aa2.95□□□□□ -1.94
VPS13A-207ENST00000419472 STAB2Q8WWQ8 2551 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 ETDCA0A1B0GVM5 59 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 IGLV1-51P01701 117 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 DEFB130BP0DP73 79 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 DEFB130AP0DP74 79 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 COX7BP24311 80 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 SPINT4Q6UDR6 99 aa2.94□□□□□ -1.94
VPS13A-207ENST00000419472 CASC2Q6XLA1 102 aa2.93□□□□□ -1.94
VPS13A-207ENST00000419472 ANAPC11Q9NYG5 84 aa2.93□□□□□ -1.94
VPS13A-207ENST00000419472 LINC01558Q9Y6Z2 57 aa2.93□□□□□ -1.94
VPS13A-207ENST00000419472 CSMD3Q7Z407 3707 aa2.93□□□□□ -1.94
VPS13A-207ENST00000419472 A0A096LPF7 62 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 K7EIL1 84 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 CMYA5Q8N3K9 4069 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 IGKV3OR2-268A0A0C4DH90 116 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 DEFB135Q30KP9 77 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
VPS13A-207ENST00000419472 CNBPP62633 177 aaKnown RBP2.91□□□□□ -1.94
VPS13A-207ENST00000419472 DNAH3Q8TD57 4116 aa2.91□□□□□ -1.94
VPS13A-207ENST00000419472 PRB2P02812 416 aaPredicted RBP2.91□□□□□ -1.94
VPS13A-207ENST00000419472 Q6ZQY7 126 aa2.91□□□□□ -1.94
VPS13A-207ENST00000419472 KCNQ1DNQ9H478 68 aa2.91□□□□□ -1.94
VPS13A-207ENST00000419472 TOMM7Q9P0U1 55 aa2.91□□□□□ -1.94
VPS13A-207ENST00000419472 LYSTQ99698 3801 aa2.91□□□□□ -1.94
VPS13A-207ENST00000419472 IGKV2D-24A0A075B6R9 120 aa2.9□□□□□ -1.94
VPS13A-207ENST00000419472 A8MTW9 85 aa2.9□□□□□ -1.94
VPS13A-207ENST00000419472 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.9□□□□□ -1.94
VPS13A-207ENST00000419472 TRGV4A0A0C4DH28 118 aa2.9□□□□□ -1.95
VPS13A-207ENST00000419472 HTN3P15516 51 aa2.9□□□□□ -1.95
VPS13A-207ENST00000419472 SPINK7P58062 85 aa2.9□□□□□ -1.95
VPS13A-207ENST00000419472 COL7A1Q02388 2944 aa2.9□□□□□ -1.95
VPS13A-207ENST00000419472 RTL8CO15255 209 aa2.89□□□□□ -1.95
VPS13A-207ENST00000419472 HRES1P13985 223 aa2.89□□□□□ -1.95
VPS13A-207ENST00000419472 RETNLBQ9BQ08 111 aa2.89□□□□□ -1.95
VPS13A-207ENST00000419472 COX17Q14061 63 aa2.89□□□□□ -1.95
VPS13A-207ENST00000419472 COA5Q86WW8 74 aa2.89□□□□□ -1.95
VPS13A-207ENST00000419472 A0A1W2PNM2 257 aa2.88□□□□□ -1.95
VPS13A-207ENST00000419472 CLPSL2Q6UWE3 100 aa2.88□□□□□ -1.95
VPS13A-207ENST00000419472 HERC1Q15751 4861 aa2.88□□□□□ -1.95
VPS13A-207ENST00000419472 IGLV6-57P01721 117 aa2.87□□□□□ -1.95
VPS13A-207ENST00000419472 LCE3CQ5T5A8 94 aa2.87□□□□□ -1.95
VPS13A-207ENST00000419472 Q8IZM0 81 aa2.87□□□□□ -1.95
VPS13A-207ENST00000419472 C9orf163Q8N9P6 203 aa2.87□□□□□ -1.95
VPS13A-207ENST00000419472 SPAG11BQ08648 103 aa2.87□□□□□ -1.95
VPS13A-207ENST00000419472 LINC00959A0A1B0GUT2 108 aa2.86□□□□□ -1.95
VPS13A-207ENST00000419472 IGLV10-54A0A075B6I4 117 aa2.85□□□□□ -1.95
VPS13A-207ENST00000419472 SPAG11AQ6PDA7 123 aa2.84□□□□□ -1.95
VPS13A-207ENST00000419472 C1orf134Q5TEV5 83 aa2.84□□□□□ -1.95
VPS13A-207ENST00000419472 CSAG1Q6PB30 78 aa2.84□□□□□ -1.95
VPS13A-207ENST00000419472 K7EQZ3 153 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 HMCN1Q96RW7 5635 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 ROMO1P60602 79 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 PRO0255Q9UI72 69 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 IGLV5-48A0A075B6I7 105 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 H0Y9P7 68 aa2.83□□□□□ -1.96
VPS13A-207ENST00000419472 ABCA13Q86UQ4 5058 aa2.82□□□□□ -1.96
VPS13A-207ENST00000419472 SPART-AS1P0CW21 52 aa2.82□□□□□ -1.96
VPS13A-207ENST00000419472 ANGP03950 147 aaKnown RBP2.82□□□□□ -1.96
VPS13A-207ENST00000419472 DNAH7Q8WXX0 4024 aa2.81□□□□□ -1.96
VPS13A-207ENST00000419472 NUPR2A6NF83 97 aa2.81□□□□□ -1.96
VPS13A-207ENST00000419472 HUWE1Q7Z6Z7 4374 aaKnown RBP2.81□□□□□ -1.96
VPS13A-207ENST00000419472 SPRR4Q96PI1 79 aa2.81□□□□□ -1.96
VPS13A-207ENST00000419472 SPATA8Q6RVD6 105 aa2.8□□□□□ -1.96
VPS13A-207ENST00000419472 DNAH10Q8IVF4 4471 aa2.8□□□□□ -1.96
VPS13A-207ENST00000419472 C20orf166-AS1Q96NR2 134 aa2.8□□□□□ -1.96
VPS13A-207ENST00000419472 KRTAP10-12P60413 245 aa2.79□□□□□ -1.96
VPS13A-207ENST00000419472 WFDC10BQ8IUB3 73 aa2.79□□□□□ -1.96
VPS13A-207ENST00000419472 KRTAP13-2Q52LG2 175 aa2.78□□□□□ -1.96
VPS13A-207ENST00000419472 MUC2Q02817 5179 aa2.78□□□□□ -1.96
VPS13A-207ENST00000419472 DNAH9Q9NYC9 4486 aa2.78□□□□□ -1.96
VPS13A-207ENST00000419472 DEFB131BA0A096LNP1 70 aa2.78□□□□□ -1.97
VPS13A-207ENST00000419472 MIR22HGQ0VDD5 57 aa2.77□□□□□ -1.97
VPS13A-207ENST00000419472 SRRM2Q9UQ35 2752 aaKnown RBP2.77□□□□□ -1.97
VPS13A-207ENST00000419472 PLECQ15149 4684 aaKnown RBP2.77□□□□□ -1.97
VPS13A-207ENST00000419472 WFDC13Q8IUB5 93 aa2.77□□□□□ -1.97
VPS13A-207ENST00000419472 A0A1W2PNN7 141 aa2.76□□□□□ -1.97
VPS13A-207ENST00000419472 C1orf137Q5JT78 98 aa2.76□□□□□ -1.97
VPS13A-207ENST00000419472 P0C880 135 aa2.76□□□□□ -1.97
VPS13A-207ENST00000419472 LELP1Q5T871 98 aa2.76□□□□□ -1.97
VPS13A-207ENST00000419472 UNQ6190/PRO20217Q6UXQ8 127 aa2.76□□□□□ -1.97
VPS13A-207ENST00000419472 SACSQ9NZJ4 4579 aa2.75□□□□□ -1.97
VPS13A-207ENST00000419472 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
VPS13A-207ENST00000419472 GVQW2A0A096LPI5 108 aaPredicted RBP2.75□□□□□ -1.97
VPS13A-207ENST00000419472 STARD9Q9P2P6 4700 aa2.75□□□□□ -1.97
VPS13A-207ENST00000419472 DYNC2H1Q8NCM8 4307 aaKnown RBP2.74□□□□□ -1.97
VPS13A-207ENST00000419472 ALMS1Q8TCU4 4167 aa2.74□□□□□ -1.97
VPS13A-207ENST00000419472 KMT2AQ03164 3969 aa2.74□□□□□ -1.97
VPS13A-207ENST00000419472 DEFB105AQ8NG35 78 aa2.73□□□□□ -1.97
VPS13A-207ENST00000419472 APLNQ9ULZ1 77 aa2.73□□□□□ -1.97
VPS13A-207ENST00000419472 A0A0G2JQZ4 141 aa2.73□□□□□ -1.97
VPS13A-207ENST00000419472 H3BNG1 76 aa2.73□□□□□ -1.97
VPS13A-207ENST00000419472 PCOTHQ58A44 107 aa2.72□□□□□ -1.97
VPS13A-207ENST00000419472 PSORS1C2Q9UIG4 136 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms