RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PLA2G1BP04054 148 aaKnown RBP8.91□□□□□ -0.98
USP4-203ENST00000415188 WFDC13Q8IUB5 93 aa8.89□□□□□ -0.99
USP4-203ENST00000415188 CIRBP-AS1Q8TBR5 109 aa8.89□□□□□ -0.99
USP4-203ENST00000415188 NDUFB1O75438 58 aa8.89□□□□□ -0.99
USP4-203ENST00000415188 CASC2Q6XLA1 102 aa8.89□□□□□ -0.99
USP4-203ENST00000415188 IGLV9-49A0A0B4J1Y8 123 aa8.88□□□□□ -0.99
USP4-203ENST00000415188 H3BPC8 53 aa8.88□□□□□ -0.99
USP4-203ENST00000415188 MP68P56378 58 aa8.88□□□□□ -0.99
USP4-203ENST00000415188 LRP1Q07954 4544 aaKnown RBP8.88□□□□□ -0.99
USP4-203ENST00000415188 SMIM26A0A096LP01 95 aa8.87□□□□□ -0.99
USP4-203ENST00000415188 J3QL48 77 aa8.87□□□□□ -0.99
USP4-203ENST00000415188 FAT3Q8TDW7 4589 aa8.86□□□□□ -0.99
USP4-203ENST00000415188 KRTAP10-4P60372 401 aaPredicted RBP8.86□□□□□ -0.99
USP4-203ENST00000415188 PKHD1L1Q86WI1 4243 aa8.84□□□□□ -0.99
USP4-203ENST00000415188 IGLV7-43P04211 117 aa8.83□□□□□ -1
USP4-203ENST00000415188 MOBPQ13875 183 aa8.83□□□□□ -1
USP4-203ENST00000415188 Q5XG85 94 aa8.83□□□□□ -1
USP4-203ENST00000415188 Q96NJ1 140 aa8.83□□□□□ -1
USP4-203ENST00000415188 MMP24-AS1A0A0U1RRL7 71 aa8.83□□□□□ -1
USP4-203ENST00000415188 ASB16-AS1Q495Z4 193 aa8.79□□□□□ -1
USP4-203ENST00000415188 hDV103S1A0JD37 113 aa8.78□□□□□ -1
USP4-203ENST00000415188 CD164Q04900 197 aa8.78□□□□□ -1
USP4-203ENST00000415188 TRAV22A0A0B4J277 110 aa8.77□□□□□ -1
USP4-203ENST00000415188 H0Y9P7 68 aa8.77□□□□□ -1
USP4-203ENST00000415188 CYP4F30PQ9H0H9 118 aa8.77□□□□□ -1
USP4-203ENST00000415188 TP53AIP1Q9HCN2 124 aa8.77□□□□□ -1
USP4-203ENST00000415188 HMCN2Q8NDA2 5059 aa8.76□□□□□ -1.01
USP4-203ENST00000415188 A0A1B0GVX0 72 aa8.76□□□□□ -1.01
USP4-203ENST00000415188 C8orf17Q9NRJ1 99 aa8.76□□□□□ -1.01
USP4-203ENST00000415188 SSBP3-AS1Q7Z2R9 100 aa8.75□□□□□ -1.01
USP4-203ENST00000415188 LINC00208Q96KT6 92 aa8.75□□□□□ -1.01
USP4-203ENST00000415188 HRCT1Q6UXD1 115 aa8.74□□□□□ -1.01
USP4-203ENST00000415188 C4orf26Q17RF5 130 aa8.73□□□□□ -1.01
USP4-203ENST00000415188 SPANXA2-OT1Q8N9U9 137 aa8.73□□□□□ -1.01
USP4-203ENST00000415188 FP248Q71RG6 208 aaPredicted RBP8.72□□□□□ -1.01
USP4-203ENST00000415188 ANAPC11Q9NYG5 84 aa8.71□□□□□ -1.01
USP4-203ENST00000415188 C1orf64Q8NEQ6 169 aa8.69□□□□□ -1.02
USP4-203ENST00000415188 IGHV6-1A0A0B4J1U7 121 aa8.67□□□□□ -1.02
USP4-203ENST00000415188 FAM229BQ4G0N7 80 aa8.67□□□□□ -1.02
USP4-203ENST00000415188 MRPL34Q9BQ48 92 aaKnown RBP8.67□□□□□ -1.02
USP4-203ENST00000415188 C8orf87E5RJ46 101 aa8.64□□□□□ -1.03
USP4-203ENST00000415188 UBR4Q5T4S7 5183 aa8.63□□□□□ -1.03
USP4-203ENST00000415188 MT1HL1P0DM35 61 aa8.62□□□□□ -1.03
USP4-203ENST00000415188 TNXBP22105 4242 aa8.6□□□□□ -1.03
USP4-203ENST00000415188 NDUFS5O43920 106 aa8.58□□□□□ -1.04
USP4-203ENST00000415188 Q1T7F1 81 aa8.58□□□□□ -1.04
USP4-203ENST00000415188 IGLV7-46A0A075B6I9 117 aa8.57□□□□□ -1.04
USP4-203ENST00000415188 PRR4Q16378 134 aa8.57□□□□□ -1.04
USP4-203ENST00000415188 SPINK6Q6UWN8 80 aa8.56□□□□□ -1.04
USP4-203ENST00000415188 KRTAP13-2Q52LG2 175 aa8.55□□□□□ -1.04
USP4-203ENST00000415188 MPLKIPQ8TAP9 179 aa8.55□□□□□ -1.04
USP4-203ENST00000415188 V9GYY9 64 aa8.55□□□□□ -1.04
USP4-203ENST00000415188 A0A087X002 238 aa8.54□□□□□ -1.04
USP4-203ENST00000415188 NOTCH2NLQ7Z3S9 236 aa8.54□□□□□ -1.04
USP4-203ENST00000415188 LOC101927531A0A1B0GV80 90 aa8.53□□□□□ -1.04
USP4-203ENST00000415188 LIMD2Q9BT23 127 aa8.53□□□□□ -1.04
USP4-203ENST00000415188 KRTAP1-4P0C5Y4 121 aa8.51□□□□□ -1.05
USP4-203ENST00000415188 C1orf195Q5TG92 126 aa8.5□□□□□ -1.05
USP4-203ENST00000415188 LINC00313P59037 77 aa8.48□□□□□ -1.05
USP4-203ENST00000415188 KRTAP13-3Q3SY46 172 aa8.48□□□□□ -1.05
USP4-203ENST00000415188 PCOTHQ58A44 107 aa8.47□□□□□ -1.05
USP4-203ENST00000415188 PRO0628Q9UI54 55 aa8.47□□□□□ -1.05
USP4-203ENST00000415188 LRP2P98164 4655 aa8.45□□□□□ -1.06
USP4-203ENST00000415188 COA5Q86WW8 74 aa8.45□□□□□ -1.06
USP4-203ENST00000415188 Q8N9P0 234 aaPredicted RBP8.45□□□□□ -1.06
USP4-203ENST00000415188 C4orf48Q5BLP8 95 aa8.44□□□□□ -1.06
USP4-203ENST00000415188 KRTAP10-8P60410 259 aa8.43□□□□□ -1.06
USP4-203ENST00000415188 SPINK1P00995 79 aa8.42□□□□□ -1.06
USP4-203ENST00000415188 Q5W150 140 aa8.42□□□□□ -1.06
USP4-203ENST00000415188 TYMSOSQ8TAI1 123 aa8.41□□□□□ -1.06
USP4-203ENST00000415188 RPS29P62273 56 aaKnown RBP8.4□□□□□ -1.06
USP4-203ENST00000415188 KRTAP16-1A8MUX0 517 aa8.37□□□□□ -1.07
USP4-203ENST00000415188 SPAG11AQ6PDA7 123 aa8.37□□□□□ -1.07
USP4-203ENST00000415188 RNF213Q63HN8 5207 aa8.36□□□□□ -1.07
USP4-203ENST00000415188 BRK1Q8WUW1 75 aa8.36□□□□□ -1.07
USP4-203ENST00000415188 PSPHP1O15172 72 aa8.32□□□□□ -1.08
USP4-203ENST00000415188 IGKV2-30P06310 120 aa8.32□□□□□ -1.08
USP4-203ENST00000415188 HRES1P13985 223 aa8.32□□□□□ -1.08
USP4-203ENST00000415188 LINC00304Q8N9R0 145 aa8.32□□□□□ -1.08
USP4-203ENST00000415188 A8MUN3 132 aa8.31□□□□□ -1.08
USP4-203ENST00000415188 PRR26Q8N8Z3 221 aa8.3□□□□□ -1.08
USP4-203ENST00000415188 ACYP2P14621 99 aa8.29□□□□□ -1.08
USP4-203ENST00000415188 Q5VV11 94 aa8.29□□□□□ -1.08
USP4-203ENST00000415188 LINC01558Q9Y6Z2 57 aa8.28□□□□□ -1.08
USP4-203ENST00000415188 DMAC1Q96GE9 116 aa8.27□□□□□ -1.09
USP4-203ENST00000415188 PRR15LQ9BU68 103 aa8.27□□□□□ -1.09
USP4-203ENST00000415188 LPAP08519 4548 aa8.27□□□□□ -1.09
USP4-203ENST00000415188 Q75L30 129 aa8.26□□□□□ -1.09
USP4-203ENST00000415188 CHKB-CPT1BH3BT56 60 aa8.2□□□□□ -1.1
USP4-203ENST00000415188 RETNLBQ9BQ08 111 aa8.2□□□□□ -1.1
USP4-203ENST00000415188 IGKV2D-30A0A075B6S6 120 aa8.14□□□□□ -1.11
USP4-203ENST00000415188 C7orf65Q6ZTY9 151 aa8.13□□□□□ -1.11
USP4-203ENST00000415188 A6NED7 52 aa8.11□□□□□ -1.11
USP4-203ENST00000415188 C20orf166-AS1Q96NR2 134 aa8.1□□□□□ -1.11
USP4-203ENST00000415188 A8MUU9 505 aa8.09□□□□□ -1.11
USP4-203ENST00000415188 CDC42SE1Q9NRR8 79 aa8.06□□□□□ -1.12
USP4-203ENST00000415188 MUC2Q02817 5179 aa8.02□□□□□ -1.12
USP4-203ENST00000415188 ATP11AUNQ6ZP68 121 aa8.02□□□□□ -1.13
USP4-203ENST00000415188 LCA10Q71F78 164 aa8.02□□□□□ -1.13
USP4-203ENST00000415188 C9orf92A6NGG3 77 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 167 ms