RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 ASPMQ8IZT6 3477 aa3.99□□□□□ -1.77
SPTLC3-201ENST00000399002 KRTAP3-1Q9BYR8 98 aa3.99□□□□□ -1.77
SPTLC3-201ENST00000399002 CHD6Q8TD26 2715 aa3.99□□□□□ -1.77
SPTLC3-201ENST00000399002 AKAP13Q12802 2813 aa3.98□□□□□ -1.77
SPTLC3-201ENST00000399002 FREM2Q5SZK8 3169 aa3.98□□□□□ -1.77
SPTLC3-201ENST00000399002 NBEAL1Q6ZS30 2694 aa3.97□□□□□ -1.77
SPTLC3-201ENST00000399002 GCN1Q92616 2671 aaKnown RBP3.97□□□□□ -1.77
SPTLC3-201ENST00000399002 ZFHX4Q86UP3 3567 aa3.97□□□□□ -1.77
SPTLC3-201ENST00000399002 CFAP47Q6ZTR5 3102 aa3.96□□□□□ -1.78
SPTLC3-201ENST00000399002 CELSR3Q9NYQ7 3312 aa3.95□□□□□ -1.78
SPTLC3-201ENST00000399002 UNC79Q9P2D8 2635 aa3.94□□□□□ -1.78
SPTLC3-201ENST00000399002 SETXQ7Z333 2677 aaKnown RBP3.94□□□□□ -1.78
SPTLC3-201ENST00000399002 INE1O15225 51 aa3.94□□□□□ -1.78
SPTLC3-201ENST00000399002 LOC400499M0QZD8 3231 aa3.93□□□□□ -1.78
SPTLC3-201ENST00000399002 IGSF10Q6WRI0 2623 aa3.93□□□□□ -1.78
SPTLC3-201ENST00000399002 LAMA5O15230 3695 aa3.93□□□□□ -1.78
SPTLC3-201ENST00000399002 NSD1Q96L73 2696 aaPredicted RBP3.93□□□□□ -1.78
SPTLC3-201ENST00000399002 FRYQ5TBA9 3013 aa3.92□□□□□ -1.78
SPTLC3-201ENST00000399002 KRTAP15-1Q3LI76 137 aa3.92□□□□□ -1.78
SPTLC3-201ENST00000399002 ITPR2Q14571 2701 aa3.92□□□□□ -1.78
SPTLC3-201ENST00000399002 KRTAP10-6P60371 365 aaPredicted RBP3.91□□□□□ -1.78
SPTLC3-201ENST00000399002 DMXL2Q8TDJ6 3036 aa3.9□□□□□ -1.78
SPTLC3-201ENST00000399002 SPENQ96T58 3664 aaKnown RBP3.9□□□□□ -1.79
SPTLC3-201ENST00000399002 BSNQ9UPA5 3926 aa3.89□□□□□ -1.79
SPTLC3-201ENST00000399002 PRRC2CQ9Y520 2896 aaKnown RBP3.89□□□□□ -1.79
SPTLC3-201ENST00000399002 TEX15Q9BXT5 2789 aa3.88□□□□□ -1.79
SPTLC3-201ENST00000399002 KRTAP23-1A1A580 65 aa3.88□□□□□ -1.79
SPTLC3-201ENST00000399002 ZZEF1O43149 2961 aa3.87□□□□□ -1.79
SPTLC3-201ENST00000399002 FLNBO75369 2602 aaKnown RBP3.87□□□□□ -1.79
SPTLC3-201ENST00000399002 ATMQ13315 3056 aa3.86□□□□□ -1.79
SPTLC3-201ENST00000399002 MGAQ8IWI9 3026 aa3.85□□□□□ -1.79
SPTLC3-201ENST00000399002 BOD1L1Q8NFC6 3051 aa3.84□□□□□ -1.79
SPTLC3-201ENST00000399002 MAP1AP78559 2803 aaPredicted RBP3.83□□□□□ -1.8
SPTLC3-201ENST00000399002 ALMS1Q8TCU4 4167 aa3.83□□□□□ -1.8
SPTLC3-201ENST00000399002 NBEAQ8NFP9 2946 aa3.83□□□□□ -1.8
SPTLC3-201ENST00000399002 STAB2Q8WWQ8 2551 aa3.83□□□□□ -1.8
SPTLC3-201ENST00000399002 STAB1Q9NY15 2570 aa3.81□□□□□ -1.8
SPTLC3-201ENST00000399002 ITPR1Q14643 2758 aa3.81□□□□□ -1.8
SPTLC3-201ENST00000399002 NBEAL2Q6ZNJ1 2754 aa3.81□□□□□ -1.8
SPTLC3-201ENST00000399002 DSPP15924 2871 aaKnown RBP3.81□□□□□ -1.8
SPTLC3-201ENST00000399002 SMG1Q96Q15 3661 aaKnown RBP3.79□□□□□ -1.8
SPTLC3-201ENST00000399002 COL6A5A8TX70 2615 aa3.79□□□□□ -1.8
SPTLC3-201ENST00000399002 FLG2Q5D862 2391 aaPredicted RBP3.79□□□□□ -1.8
SPTLC3-201ENST00000399002 KRTAP3-2Q9BYR7 98 aa3.77□□□□□ -1.81
SPTLC3-201ENST00000399002 HUWE1Q7Z6Z7 4374 aaKnown RBP3.77□□□□□ -1.81
SPTLC3-201ENST00000399002 KRTAP3-3Q9BYR6 98 aa3.76□□□□□ -1.81
SPTLC3-201ENST00000399002 BAHCC1Q9P281 2608 aa3.76□□□□□ -1.81
SPTLC3-201ENST00000399002 KRTAP10-12P60413 245 aa3.76□□□□□ -1.81
SPTLC3-201ENST00000399002 KALRNO60229 2985 aa3.76□□□□□ -1.81
SPTLC3-201ENST00000399002 RELNP78509 3460 aa3.75□□□□□ -1.81
SPTLC3-201ENST00000399002 MT1HL1P0DM35 61 aa3.75□□□□□ -1.81
SPTLC3-201ENST00000399002 APCP25054 2843 aa3.74□□□□□ -1.81
SPTLC3-201ENST00000399002 UBR5O95071 2799 aaPredicted RBP3.74□□□□□ -1.81
SPTLC3-201ENST00000399002 UTP20O75691 2785 aaKnown RBP3.72□□□□□ -1.81
SPTLC3-201ENST00000399002 NOTCH1P46531 2555 aa3.69□□□□□ -1.82
SPTLC3-201ENST00000399002 ADGRG4Q8IZF6 3080 aa3.68□□□□□ -1.82
SPTLC3-201ENST00000399002 KRTAP10-4P60372 401 aaPredicted RBP3.68□□□□□ -1.82
SPTLC3-201ENST00000399002 HIVEP1P15822 2718 aa3.68□□□□□ -1.82
SPTLC3-201ENST00000399002 ANK3Q12955 4377 aaKnown RBP3.68□□□□□ -1.82
SPTLC3-201ENST00000399002 COL12A1Q99715 3063 aa3.65□□□□□ -1.83
SPTLC3-201ENST00000399002 FLNCQ14315 2725 aa3.64□□□□□ -1.83
SPTLC3-201ENST00000399002 HRNRQ86YZ3 2850 aaPredicted RBP3.63□□□□□ -1.83
SPTLC3-201ENST00000399002 LRBAP50851 2863 aa3.63□□□□□ -1.83
SPTLC3-201ENST00000399002 KRTAP12-3P60328 96 aa3.63□□□□□ -1.83
SPTLC3-201ENST00000399002 TENM4Q6N022 2769 aa3.62□□□□□ -1.83
SPTLC3-201ENST00000399002 DCHS2Q6V1P9 2916 aa3.62□□□□□ -1.83
SPTLC3-201ENST00000399002 CRYBG3Q68DQ2 2970 aa3.6□□□□□ -1.83
SPTLC3-201ENST00000399002 NBPF19A0A087WUL8 3843 aa3.59□□□□□ -1.83
SPTLC3-201ENST00000399002 NIPBLQ6KC79 2804 aaeCLIP3.59□□□□□ -1.83
SPTLC3-201ENST00000399002 CSMD2Q7Z408 3487 aa3.58□□□□□ -1.84
SPTLC3-201ENST00000399002 DNAH2Q9P225 4427 aa3.58□□□□□ -1.84
SPTLC3-201ENST00000399002 VPS13CQ709C8 3753 aa3.58□□□□□ -1.84
SPTLC3-201ENST00000399002 FBN2P35556 2912 aa3.58□□□□□ -1.84
SPTLC3-201ENST00000399002 LCE3AQ5TA76 89 aa3.57□□□□□ -1.84
SPTLC3-201ENST00000399002 CELSR2Q9HCU4 2923 aa3.57□□□□□ -1.84
SPTLC3-201ENST00000399002 TACC2O95359 2948 aa3.56□□□□□ -1.84
SPTLC3-201ENST00000399002 TGP01266 2768 aa3.55□□□□□ -1.84
SPTLC3-201ENST00000399002 ASH1LQ9NR48 2969 aaKnown RBP3.55□□□□□ -1.84
SPTLC3-201ENST00000399002 CSMD1Q96PZ7 3565 aa3.54□□□□□ -1.84
SPTLC3-201ENST00000399002 AKAP9Q99996 3911 aa3.52□□□□□ -1.85
SPTLC3-201ENST00000399002 ZNF469Q96JG9 3925 aaPredicted RBP3.52□□□□□ -1.85
SPTLC3-201ENST00000399002 PDZD2O15018 2839 aa3.51□□□□□ -1.85
SPTLC3-201ENST00000399002 SVEP1Q4LDE5 3571 aa3.49□□□□□ -1.85
SPTLC3-201ENST00000399002 CELSR1Q9NYQ6 3014 aa3.48□□□□□ -1.85
SPTLC3-201ENST00000399002 ZFHX3Q15911 3703 aa3.48□□□□□ -1.85
SPTLC3-201ENST00000399002 CRCT1Q9UGL9 99 aa3.45□□□□□ -1.86
SPTLC3-201ENST00000399002 ZANQ9Y493 2812 aa3.44□□□□□ -1.86
SPTLC3-201ENST00000399002 OTOGQ6ZRI0 2925 aa3.44□□□□□ -1.86
SPTLC3-201ENST00000399002 TENM2Q9NT68 2774 aa3.43□□□□□ -1.86
SPTLC3-201ENST00000399002 KRTAP19-4Q3LI73 84 aa3.43□□□□□ -1.86
SPTLC3-201ENST00000399002 KRTAP4-5Q9BYR2 181 aa3.42□□□□□ -1.86
SPTLC3-201ENST00000399002 CUBNO60494 3623 aa3.42□□□□□ -1.86
SPTLC3-201ENST00000399002 LORP23490 312 aaPredicted RBP3.41□□□□□ -1.86
SPTLC3-201ENST00000399002 KRTAP8-1Q8IUC2 63 aa3.4□□□□□ -1.86
SPTLC3-201ENST00000399002 MXRA5Q9NR99 2828 aa3.39□□□□□ -1.87
SPTLC3-201ENST00000399002 DNAH1Q9P2D7 4330 aa3.38□□□□□ -1.87
SPTLC3-201ENST00000399002 SPRR2GQ9BYE4 73 aa3.36□□□□□ -1.87
SPTLC3-201ENST00000399002 DNAH10Q8IVF4 4471 aa3.36□□□□□ -1.87
SPTLC3-201ENST00000399002 TENM3Q9P273 2699 aa3.33□□□□□ -1.88
SPTLC3-201ENST00000399002 DNAH3Q8TD57 4116 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms