RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 HECTD4Q9Y4D8 3996 aa5.15□□□□□ -1.58
LIMS1-203ENST00000393310 C6orf48Q9UBA6 75 aa5.15□□□□□ -1.58
LIMS1-203ENST00000393310 M0QY20 66 aa5.15□□□□□ -1.59
LIMS1-203ENST00000393310 ZNF861PO60384 105 aa5.15□□□□□ -1.59
LIMS1-203ENST00000393310 C20orf166-AS1Q96NR2 134 aa5.14□□□□□ -1.59
LIMS1-203ENST00000393310 LITAFQ99732 161 aa5.14□□□□□ -1.59
LIMS1-203ENST00000393310 DEFB116Q30KQ4 102 aa5.14□□□□□ -1.59
LIMS1-203ENST00000393310 TENM3Q9P273 2699 aa5.13□□□□□ -1.59
LIMS1-203ENST00000393310 IGLV4-60A0A075B6I1 120 aa5.13□□□□□ -1.59
LIMS1-203ENST00000393310 A8MU10 97 aa5.13□□□□□ -1.59
LIMS1-203ENST00000393310 NF1P21359 2839 aa5.13□□□□□ -1.59
LIMS1-203ENST00000393310 Q8IZM0 81 aa5.12□□□□□ -1.59
LIMS1-203ENST00000393310 PRR9Q5T870 116 aa5.11□□□□□ -1.59
LIMS1-203ENST00000393310 KRTAP25-1Q3LHN0 102 aa5.1□□□□□ -1.59
LIMS1-203ENST00000393310 DNAH10Q8IVF4 4471 aa5.1□□□□□ -1.59
LIMS1-203ENST00000393310 SPINK1P00995 79 aa5.09□□□□□ -1.59
LIMS1-203ENST00000393310 A0A096LNI7 61 aa5.09□□□□□ -1.59
LIMS1-203ENST00000393310 DYNC2H1Q8NCM8 4307 aaKnown RBP5.09□□□□□ -1.59
LIMS1-203ENST00000393310 Q6ZSA8 131 aa5.09□□□□□ -1.59
LIMS1-203ENST00000393310 KCNQ1DNQ9H478 68 aa5.09□□□□□ -1.59
LIMS1-203ENST00000393310 PRR34Q9NV39 138 aa5.09□□□□□ -1.6
LIMS1-203ENST00000393310 ST20-AS1Q8NBB2 130 aa5.08□□□□□ -1.6
LIMS1-203ENST00000393310 SPACA4Q8TDM5 124 aa5.08□□□□□ -1.6
LIMS1-203ENST00000393310 C9orf129Q5T035 196 aaKnown RBP5.07□□□□□ -1.6
LIMS1-203ENST00000393310 A0A1W2PNM2 257 aa5.06□□□□□ -1.6
LIMS1-203ENST00000393310 PANO1I0J062 215 aa5.06□□□□□ -1.6
LIMS1-203ENST00000393310 ZANQ9Y493 2812 aa5.05□□□□□ -1.6
LIMS1-203ENST00000393310 VPS13BQ7Z7G8 4022 aa5.05□□□□□ -1.6
LIMS1-203ENST00000393310 VPS13DQ5THJ4 4388 aa5.04□□□□□ -1.6
LIMS1-203ENST00000393310 UNQ6190/PRO20217Q6UXQ8 127 aa5.04□□□□□ -1.6
LIMS1-203ENST00000393310 KRTAP1-5Q9BYS1 174 aa5.04□□□□□ -1.6
LIMS1-203ENST00000393310 Q6ZRN7 208 aaPredicted RBP5.03□□□□□ -1.6
LIMS1-203ENST00000393310 IGKV2-28A0A075B6P5 120 aa5.03□□□□□ -1.6
LIMS1-203ENST00000393310 IGKV2D-28P01615 120 aa5.03□□□□□ -1.6
LIMS1-203ENST00000393310 LINC00483Q53H64 154 aa5.02□□□□□ -1.61
LIMS1-203ENST00000393310 DNAH2Q9P225 4427 aa5.02□□□□□ -1.61
LIMS1-203ENST00000393310 NBEAL2Q6ZNJ1 2754 aa5.02□□□□□ -1.61
LIMS1-203ENST00000393310 FBN1P35555 2871 aaKnown RBP5.02□□□□□ -1.61
LIMS1-203ENST00000393310 TGP01266 2768 aa5.01□□□□□ -1.61
LIMS1-203ENST00000393310 TENM1Q9UKZ4 2725 aa5.01□□□□□ -1.61
LIMS1-203ENST00000393310 K7EQZ3 153 aa5.01□□□□□ -1.61
LIMS1-203ENST00000393310 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5□□□□□ -1.61
LIMS1-203ENST00000393310 PKD1L1Q8TDX9 2849 aa5□□□□□ -1.61
LIMS1-203ENST00000393310 A0A087WSZ3 146 aa5□□□□□ -1.61
LIMS1-203ENST00000393310 PRLHP81277 87 aa4.99□□□□□ -1.61
LIMS1-203ENST00000393310 LCE2DQ5TA82 110 aaPredicted RBP4.99□□□□□ -1.61
LIMS1-203ENST00000393310 SPATA8Q6RVD6 105 aa4.99□□□□□ -1.61
LIMS1-203ENST00000393310 FAM104AQ969W3 186 aa4.98□□□□□ -1.61
LIMS1-203ENST00000393310 Q8NDZ9 215 aa4.95□□□□□ -1.62
LIMS1-203ENST00000393310 PKD1P98161 4303 aa4.94□□□□□ -1.62
LIMS1-203ENST00000393310 A0A1B0GVX0 72 aa4.93□□□□□ -1.62
LIMS1-203ENST00000393310 C15orf56Q8N910 161 aa4.93□□□□□ -1.62
LIMS1-203ENST00000393310 ZCCHC13Q8WW36 166 aaKnown RBP4.93□□□□□ -1.62
LIMS1-203ENST00000393310 ALMS1Q8TCU4 4167 aa4.91□□□□□ -1.62
LIMS1-203ENST00000393310 A8MUU9 505 aa4.9□□□□□ -1.63
LIMS1-203ENST00000393310 HRES1P13985 223 aa4.88□□□□□ -1.63
LIMS1-203ENST00000393310 PKHD1P08F94 4074 aa4.88□□□□□ -1.63
LIMS1-203ENST00000393310 HUWE1Q7Z6Z7 4374 aaKnown RBP4.88□□□□□ -1.63
LIMS1-203ENST00000393310 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
LIMS1-203ENST00000393310 HYDINQ4G0P3 5121 aa4.86□□□□□ -1.63
LIMS1-203ENST00000393310 A0A1W2PNN7 141 aa4.86□□□□□ -1.63
LIMS1-203ENST00000393310 DNHD1Q96M86 4753 aa4.85□□□□□ -1.63
LIMS1-203ENST00000393310 IGLV6-57P01721 117 aa4.85□□□□□ -1.63
LIMS1-203ENST00000393310 Q5W150 140 aa4.83□□□□□ -1.64
LIMS1-203ENST00000393310 MRPL34Q9BQ48 92 aaKnown RBP4.83□□□□□ -1.64
LIMS1-203ENST00000393310 Q6ZRX8 168 aa4.82□□□□□ -1.64
LIMS1-203ENST00000393310 SPRR4Q96PI1 79 aa4.82□□□□□ -1.64
LIMS1-203ENST00000393310 DNAH8Q96JB1 4490 aa4.81□□□□□ -1.64
LIMS1-203ENST00000393310 RPS29P62273 56 aaKnown RBP4.8□□□□□ -1.64
LIMS1-203ENST00000393310 KRTAP17-1Q9BYP8 105 aa4.8□□□□□ -1.64
LIMS1-203ENST00000393310 A0A1B0GU33 70 aa4.8□□□□□ -1.64
LIMS1-203ENST00000393310 TPRXLQ17RH7 258 aa4.8□□□□□ -1.64
LIMS1-203ENST00000393310 DSCR10P59022 87 aa4.8□□□□□ -1.64
LIMS1-203ENST00000393310 VWFP04275 2813 aa4.79□□□□□ -1.64
LIMS1-203ENST00000393310 MYCBP2O75592 4640 aa4.78□□□□□ -1.64
LIMS1-203ENST00000393310 IGKV2D-30A0A075B6S6 120 aa4.77□□□□□ -1.65
LIMS1-203ENST00000393310 IGKV2-30P06310 120 aa4.77□□□□□ -1.65
LIMS1-203ENST00000393310 C9orf92A6NGG3 77 aa4.76□□□□□ -1.65
LIMS1-203ENST00000393310 Q96NJ1 140 aa4.76□□□□□ -1.65
LIMS1-203ENST00000393310 FAM168BA1KXE4 195 aa4.74□□□□□ -1.65
LIMS1-203ENST00000393310 DNAH11Q96DT5 4516 aa4.74□□□□□ -1.65
LIMS1-203ENST00000393310 IGLV5-48A0A075B6I7 105 aa4.74□□□□□ -1.65
LIMS1-203ENST00000393310 STARD9Q9P2P6 4700 aa4.73□□□□□ -1.65
LIMS1-203ENST00000393310 KRTAP10-8P60410 259 aa4.73□□□□□ -1.65
LIMS1-203ENST00000393310 DNAH17Q9UFH2 4485 aa4.72□□□□□ -1.65
LIMS1-203ENST00000393310 SRRM2Q9UQ35 2752 aaKnown RBP4.72□□□□□ -1.65
LIMS1-203ENST00000393310 KRTAP4-5Q9BYR2 181 aa4.71□□□□□ -1.66
LIMS1-203ENST00000393310 Q8N377 158 aa4.69□□□□□ -1.66
LIMS1-203ENST00000393310 KRTAP11-1Q8IUC1 163 aa4.69□□□□□ -1.66
LIMS1-203ENST00000393310 FAT3Q8TDW7 4589 aa4.68□□□□□ -1.66
LIMS1-203ENST00000393310 P0C880 135 aa4.67□□□□□ -1.66
LIMS1-203ENST00000393310 PLECQ15149 4684 aaKnown RBP4.67□□□□□ -1.66
LIMS1-203ENST00000393310 ANAPC11Q9NYG5 84 aa4.67□□□□□ -1.66
LIMS1-203ENST00000393310 A0A0G2JQZ4 141 aa4.66□□□□□ -1.66
LIMS1-203ENST00000393310 SACSQ9NZJ4 4579 aa4.65□□□□□ -1.66
LIMS1-203ENST00000393310 LCE2CQ5TA81 110 aa4.65□□□□□ -1.66
LIMS1-203ENST00000393310 KRTAP4-16G5E9R7 235 aaPredicted RBP4.65□□□□□ -1.67
LIMS1-203ENST00000393310 RPL37P61927 97 aaKnown RBP4.65□□□□□ -1.67
LIMS1-203ENST00000393310 KRTAP26-1Q6PEX3 210 aa4.65□□□□□ -1.67
LIMS1-203ENST00000393310 IGFL1Q6UW32 110 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms