RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IGKV4-1P06312 121 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 DSCR10P59022 87 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 PRLHP81277 87 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 RMI2Q96E14 147 aa1.36□□□□□ -2.19
VPS54-202ENST00000354504 C3orf84H3BNL1 204 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 ZCCHC13Q8WW36 166 aaKnown RBP1.35□□□□□ -2.19
VPS54-202ENST00000354504 DSCR8Q96T75 97 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 A0A087WVE0 104 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 CCDC179H3BU77 68 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 COX7BP24311 80 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 CXCL6P80162 114 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 RBM3P98179 157 aaKnown RBP1.35□□□□□ -2.19
VPS54-202ENST00000354504 FAM19A1Q7Z5A9 133 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 TYMSOSQ8TAI1 123 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 IMUPQ9GZP8 106 aa1.35□□□□□ -2.19
VPS54-202ENST00000354504 TMEM256-PLSCR3K7ERE1 68 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 INAFM2P0DMQ5 153 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 DEFB116Q30KQ4 102 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 ANAPC13Q9BS18 74 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 IGLV7-46A0A075B6I9 117 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 A0A087WTM6 91 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 KRTAP13-2Q52LG2 175 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.34□□□□□ -2.19
VPS54-202ENST00000354504 PHF5AQ7RTV0 110 aaKnown RBP1.34□□□□□ -2.19
VPS54-202ENST00000354504 LINC00472Q9H8W2 130 aa1.34□□□□□ -2.19
VPS54-202ENST00000354504 UBE2AP49459 152 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP10-5P60370 271 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 C5orf47Q569G3 176 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 HRCT1Q6UXD1 115 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 MRPL55Q7Z7F7 128 aaKnown RBP1.34□□□□□ -2.2
VPS54-202ENST00000354504 Q8N9L7 120 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 UBR4Q5T4S7 5183 aa1.34□□□□□ -2.2
VPS54-202ENST00000354504 FAM236AA0A1B0GUQ0 79 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 FAM236BA0A1B0GV22 79 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 NUPR2A6NF83 97 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 ACYP1P07311 99 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 IGFL1Q6UW32 110 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 UBL5Q9BZL1 73 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 ANAPC11Q9NYG5 84 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP9-6A8MVA2 160 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 BCE1O60756 84 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 CRYGAP11844 174 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 LINC00336Q6ZUF6 198 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 LINC00643Q86TS7 51 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 LOC107984640A0A0U1RRK4 108 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 JMJD7-PLA2G4BH0Y9G9 81 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP10-1P60331 282 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 RPS28P62857 69 aaKnown RBP1.33□□□□□ -2.2
VPS54-202ENST00000354504 V9GYY9 64 aa1.33□□□□□ -2.2
VPS54-202ENST00000354504 F8WEM9 126 aa1.32□□□□□ -2.2
VPS54-202ENST00000354504 MOBPQ13875 183 aa1.32□□□□□ -2.2
VPS54-202ENST00000354504 NREPQ16612 68 aa1.32□□□□□ -2.2
VPS54-202ENST00000354504 C1orf134Q5TEV5 83 aa1.32□□□□□ -2.2
VPS54-202ENST00000354504 C1orf137Q5JT78 98 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 C9orf153Q5TBE3 101 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 A0A087WSZ3 146 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 H7BZZ5 65 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 SMR3BP02814 79 aaPredicted RBP1.31□□□□□ -2.2
VPS54-202ENST00000354504 SPINK6Q6UWN8 80 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 PSORS1C2Q9UIG4 136 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP19-2Q3LHN2 52 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 Q5XG85 94 aa1.31□□□□□ -2.2
VPS54-202ENST00000354504 A0A1B0GW54 56 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 NDUFAF8A1L188 74 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 BPY2O14599 106 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 KLKP1Q107X0 134 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 CIRBP-AS1Q8TBR5 109 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 SS18L2Q9UHA2 77 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 A0A0U1RQV1 116 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP5-1Q6L8H4 278 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 WFDC13Q8IUB5 93 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 C20orf197Q8N268 126 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 RNF213Q63HN8 5207 aa1.3□□□□□ -2.2
VPS54-202ENST00000354504 MMP24-AS1A0A0U1RRL7 71 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 K7EQZ3 153 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 PRR4Q16378 134 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 COX7CP15954 63 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP10-12P60413 245 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 RPL37AP61513 92 aaKnown RBP1.29□□□□□ -2.2
VPS54-202ENST00000354504 SNURFQ9Y675 71 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 H3BQ85 93 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 ATP5EP2Q5VTU8 51 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 LINC00474Q9P2X8 69 aa1.29□□□□□ -2.2
VPS54-202ENST00000354504 NDUFS5O43920 106 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 FAM229BQ4G0N7 80 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 LCE3EQ5T5B0 92 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 AHNAKQ09666 5890 aaKnown RBP1.28□□□□□ -2.2
VPS54-202ENST00000354504 MT1HL1P0DM35 61 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 PDE6GP18545 87 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 KRTAP4-4Q9BYR3 166 aa1.28□□□□□ -2.2
VPS54-202ENST00000354504 ZNF861PO60384 105 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 IGLV7-43P04211 117 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 FP248Q71RG6 208 aaPredicted RBP1.27□□□□□ -2.21
VPS54-202ENST00000354504 SMIM20Q8N5G0 67 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 ATOX1O00244 68 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 Q5W150 140 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 RETNLBQ9BQ08 111 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 IGHV6-1A0A0B4J1U7 121 aa1.27□□□□□ -2.21
VPS54-202ENST00000354504 UQCRQO14949 82 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms