RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 Q96NJ1 140 aa6.57□□□□□ -1.36
SPTLC1-202ENST00000337841 LINC00472Q9H8W2 130 aa6.57□□□□□ -1.36
SPTLC1-202ENST00000337841 J3KT08 172 aa6.55□□□□□ -1.36
SPTLC1-202ENST00000337841 NREPQ16612 68 aa6.55□□□□□ -1.36
SPTLC1-202ENST00000337841 DEFB116Q30KQ4 102 aa6.55□□□□□ -1.36
SPTLC1-202ENST00000337841 SIGMAR1Q99720 223 aa6.55□□□□□ -1.36
SPTLC1-202ENST00000337841 ETDBQ3ZM63 59 aa6.54□□□□□ -1.36
SPTLC1-202ENST00000337841 A0A1B0GV90 55 aa6.53□□□□□ -1.36
SPTLC1-202ENST00000337841 LRP2P98164 4655 aa6.52□□□□□ -1.37
SPTLC1-202ENST00000337841 KRTAP9-9Q9BYP9 154 aa6.51□□□□□ -1.37
SPTLC1-202ENST00000337841 KRTAP9-4Q9BYQ2 154 aa6.51□□□□□ -1.37
SPTLC1-202ENST00000337841 LPAP08519 4548 aa6.5□□□□□ -1.37
SPTLC1-202ENST00000337841 NDUFB1O75438 58 aa6.5□□□□□ -1.37
SPTLC1-202ENST00000337841 SEC61BP60468 96 aaKnown RBP6.5□□□□□ -1.37
SPTLC1-202ENST00000337841 LINC00313P59037 77 aa6.49□□□□□ -1.37
SPTLC1-202ENST00000337841 IGHV6-1A0A0B4J1U7 121 aa6.47□□□□□ -1.37
SPTLC1-202ENST00000337841 A0A1B0GVX0 72 aa6.46□□□□□ -1.38
SPTLC1-202ENST00000337841 DSCR10P59022 87 aa6.46□□□□□ -1.38
SPTLC1-202ENST00000337841 UBL5Q9BZL1 73 aa6.46□□□□□ -1.38
SPTLC1-202ENST00000337841 A8MWP4 228 aa6.45□□□□□ -1.38
SPTLC1-202ENST00000337841 C8orf87E5RJ46 101 aa6.45□□□□□ -1.38
SPTLC1-202ENST00000337841 BPY2O14599 106 aa6.44□□□□□ -1.38
SPTLC1-202ENST00000337841 Q6ZVQ6 151 aa6.44□□□□□ -1.38
SPTLC1-202ENST00000337841 LINC00846Q9NV44 126 aa6.44□□□□□ -1.38
SPTLC1-202ENST00000337841 KRTAP4-8A0A0G2JLE6 195 aa6.43□□□□□ -1.38
SPTLC1-202ENST00000337841 RPL37P61927 97 aaKnown RBP6.43□□□□□ -1.38
SPTLC1-202ENST00000337841 ACYP1P07311 99 aa6.42□□□□□ -1.38
SPTLC1-202ENST00000337841 Q75L30 129 aa6.42□□□□□ -1.38
SPTLC1-202ENST00000337841 UBR4Q5T4S7 5183 aa6.41□□□□□ -1.38
SPTLC1-202ENST00000337841 IGKV3D-7A0A0C4DH55 119 aa6.41□□□□□ -1.38
SPTLC1-202ENST00000337841 ATP11AUNQ6ZP68 121 aa6.41□□□□□ -1.38
SPTLC1-202ENST00000337841 PCOTHQ58A44 107 aa6.4□□□□□ -1.38
SPTLC1-202ENST00000337841 NOTCH2NLQ7Z3S9 236 aa6.4□□□□□ -1.38
SPTLC1-202ENST00000337841 PRR15Q8IV56 129 aa6.4□□□□□ -1.38
SPTLC1-202ENST00000337841 C20orf166-AS1Q96NR2 134 aa6.39□□□□□ -1.39
SPTLC1-202ENST00000337841 A8MUU9 505 aa6.38□□□□□ -1.39
SPTLC1-202ENST00000337841 C8orf17Q9NRJ1 99 aa6.38□□□□□ -1.39
SPTLC1-202ENST00000337841 KRTAP16-1A8MUX0 517 aa6.37□□□□□ -1.39
SPTLC1-202ENST00000337841 FAM240AA0A1B0GVK7 77 aa6.36□□□□□ -1.39
SPTLC1-202ENST00000337841 K7EQZ3 153 aa6.35□□□□□ -1.39
SPTLC1-202ENST00000337841 J3QR89 54 aa6.34□□□□□ -1.39
SPTLC1-202ENST00000337841 CXCL6P80162 114 aa6.32□□□□□ -1.4
SPTLC1-202ENST00000337841 MUC17Q685J3 4493 aa6.32□□□□□ -1.4
SPTLC1-202ENST00000337841 A0A0U1RQV1 116 aa6.31□□□□□ -1.4
SPTLC1-202ENST00000337841 MMP24-AS1A0A0U1RRL7 71 aa6.31□□□□□ -1.4
SPTLC1-202ENST00000337841 hDV103S1A0JD37 113 aa6.31□□□□□ -1.4
SPTLC1-202ENST00000337841 Q8N9L7 120 aa6.31□□□□□ -1.4
SPTLC1-202ENST00000337841 TMEM254Q8TBM7 123 aa6.31□□□□□ -1.4
SPTLC1-202ENST00000337841 RNF213Q63HN8 5207 aa6.3□□□□□ -1.4
SPTLC1-202ENST00000337841 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
SPTLC1-202ENST00000337841 Q8N9P0 234 aaPredicted RBP6.3□□□□□ -1.4
SPTLC1-202ENST00000337841 MRPL34Q9BQ48 92 aaKnown RBP6.3□□□□□ -1.4
SPTLC1-202ENST00000337841 KRTAP4-1Q9BYQ7 146 aa6.29□□□□□ -1.4
SPTLC1-202ENST00000337841 CASC2Q6XLA1 102 aa6.28□□□□□ -1.4
SPTLC1-202ENST00000337841 WFDC13Q8IUB5 93 aa6.27□□□□□ -1.41
SPTLC1-202ENST00000337841 NDUFS5O43920 106 aa6.26□□□□□ -1.41
SPTLC1-202ENST00000337841 ATP5EP2Q5VTU8 51 aa6.26□□□□□ -1.41
SPTLC1-202ENST00000337841 LINC00643Q86TS7 51 aa6.26□□□□□ -1.41
SPTLC1-202ENST00000337841 HCG22E2RYF7 251 aa6.25□□□□□ -1.41
SPTLC1-202ENST00000337841 KRTAP19-4Q3LI73 84 aa6.25□□□□□ -1.41
SPTLC1-202ENST00000337841 ZCCHC13Q8WW36 166 aaKnown RBP6.25□□□□□ -1.41
SPTLC1-202ENST00000337841 HIST1H4AP62805 103 aaKnown RBP6.21□□□□□ -1.42
SPTLC1-202ENST00000337841 KRTAP4-7Q9BYR0 210 aa6.21□□□□□ -1.42
SPTLC1-202ENST00000337841 K7ERU9 68 aa6.2□□□□□ -1.42
SPTLC1-202ENST00000337841 MUC2Q02817 5179 aa6.18□□□□□ -1.42
SPTLC1-202ENST00000337841 SPINK7P58062 85 aa6.15□□□□□ -1.42
SPTLC1-202ENST00000337841 TP53AIP1Q9HCN2 124 aa6.15□□□□□ -1.42
SPTLC1-202ENST00000337841 COX6B2Q6YFQ2 88 aa6.14□□□□□ -1.43
SPTLC1-202ENST00000337841 Q5W150 140 aa6.13□□□□□ -1.43
SPTLC1-202ENST00000337841 RBM12B-AS1Q9P1G2 102 aa6.11□□□□□ -1.43
SPTLC1-202ENST00000337841 A0A087WVE0 104 aa6.09□□□□□ -1.43
SPTLC1-202ENST00000337841 HRES1P13985 223 aa6.08□□□□□ -1.44
SPTLC1-202ENST00000337841 KRTAP19-2Q3LHN2 52 aa6.08□□□□□ -1.44
SPTLC1-202ENST00000337841 IGKV2D-30A0A075B6S6 120 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 FAM236DA0A1B0GTK5 79 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 IGKV2-30P06310 120 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 FAM236CP0DP71 79 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 LCE4AQ5TA78 99 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 KRTAP4-9Q9BYQ8 210 aa6.07□□□□□ -1.44
SPTLC1-202ENST00000337841 C7orf65Q6ZTY9 151 aa6.06□□□□□ -1.44
SPTLC1-202ENST00000337841 IMUPQ9GZP8 106 aa6.06□□□□□ -1.44
SPTLC1-202ENST00000337841 FAT4Q6V0I7 4981 aa6.06□□□□□ -1.44
SPTLC1-202ENST00000337841 UQCRQO14949 82 aa6.05□□□□□ -1.44
SPTLC1-202ENST00000337841 MPLKIPQ8TAP9 179 aa6.04□□□□□ -1.44
SPTLC1-202ENST00000337841 SCGB1A1P11684 91 aa6.03□□□□□ -1.44
SPTLC1-202ENST00000337841 MT-ATP8P03928 68 aa6.02□□□□□ -1.45
SPTLC1-202ENST00000337841 TRAV22A0A0B4J277 110 aa6□□□□□ -1.45
SPTLC1-202ENST00000337841 ATOX1O00244 68 aa5.99□□□□□ -1.45
SPTLC1-202ENST00000337841 MT1HP80294 61 aa5.99□□□□□ -1.45
SPTLC1-202ENST00000337841 M0R2T5 61 aa5.98□□□□□ -1.45
SPTLC1-202ENST00000337841 LOC101927531A0A1B0GV80 90 aa5.97□□□□□ -1.45
SPTLC1-202ENST00000337841 H0Y9P7 68 aa5.97□□□□□ -1.45
SPTLC1-202ENST00000337841 OCR1Q9BZK8 76 aa5.96□□□□□ -1.46
SPTLC1-202ENST00000337841 KRTAP9-7A8MTY7 169 aa5.95□□□□□ -1.46
SPTLC1-202ENST00000337841 MP68P56378 58 aa5.95□□□□□ -1.46
SPTLC1-202ENST00000337841 C5orf47Q569G3 176 aa5.95□□□□□ -1.46
SPTLC1-202ENST00000337841 CYP4F30PQ9H0H9 118 aa5.95□□□□□ -1.46
SPTLC1-202ENST00000337841 C4orf26Q17RF5 130 aa5.93□□□□□ -1.46
SPTLC1-202ENST00000337841 SVIPQ8NHG7 77 aa5.93□□□□□ -1.46
SPTLC1-202ENST00000337841 KRTAP3-1Q9BYR8 98 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms